Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0291 ATGGCAGATGGTGAAGATATCCAGCCTCTTGTCTGTGATAATGGAACTGGAATGGTCAAGGCTGGATTTGCCGGTGACGATGCTCCGAGGGCTGTGTTTCCTAGTATCGTCGGCAGACCACGTCATACCGGTGTGATGGTTGGAATGGGCCAGAAGGATGCCTATGTTGGGGATGAAGCTCAGTCAAAAAGAGGTATTCTTACATTGAAATACCCAATTGAGCATGGTATTGTAAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAACGAGCTACGTGTTGCTCCCGAAGAGCATCCAATACTTCTTACTGAAGCACCACTTAACCCAAAAGCAAACAGGGAGAAGATGACTCAGATCATGTTCGAAACCTTCGACGTCCCTGCTATGTATGTTGCAATCCAGGCTGTTTTATCTCTCTACGCCAGTGGTCGGACAACAGGTATTGTGTTGGATTCTGGTGACGGAGTGAGTCACACAGTGCCGATATACGAGGGGTTCTCGCTCCCCCATGCAATCCTACGTCTTGACCTTGCCGGTCGTGATCTGACTGATGCTTTGATGAAAATTCTTACCGAAAGAGGTTACATGTTCACGACAACAGCCGAGCGGGAAATTGTCCGTGATGTGAAGGAGAAGCTTGCATATGTGGCCCTTGATTATGAGCAAGAACTGGAGACAGCCAGGACTAGTTCAGCCATCGAGAAAAGCTACGAACTACCAGACGGGCAGGTGATTACAATCGGAGCTGAGAGATTCCGTTGCCCAGAAGTACTTTTCCAGCCATCTCTGATAGGCATGGAATCTCCTGGGATCCACGAAACCACATACAACTCCATCATGAAGTGTGATGTTGATATCAGGAAGGACTTGTACGGTAACATCGTCCTCAGTGGTGGTACGACAATGTTCCCCGGCATTGCGGATCGGATGAGCAAAGAAATCACAGCTCTTGCTCCCAGCAGCATGAAGATTAAGGTCGTTGCTCCTCCAGAGAGGAAGTACAGTGTTTGGATTGGAGGATCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATCACAAAGGCTGAATACGACGAGTCGGGTCCTGCTATTGTTCACAGGAAATGCTTCTAA 1134 48.32 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETARTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3562557 3566329 - Maker00006372 Lcy4g0291 629817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0291 377 SMART actin_3 7 377 IPR004000 -
Lcy4g0291 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Lcy4g0291 377 PANTHER ACTIN 8 369 IPR004000 -
Lcy4g0291 377 Pfam Actin 5 377 IPR004000 -
Lcy4g0291 377 Gene3D - 10 371 - -
Lcy4g0291 377 FunFam Major actin 261 340 - -
Lcy4g0291 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Lcy4g0291 377 FunFam Actin, muscle 182 273 - -
Lcy4g0291 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Lcy4g0291 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Lcy4g0291 377 Gene3D - 140 340 - -
Lcy4g0291 377 PRINTS Actin signature 51 62 IPR004000 -
Lcy4g0291 377 PRINTS Actin signature 238 254 IPR004000 -
Lcy4g0291 377 PRINTS Actin signature 63 85 IPR004000 -
Lcy4g0291 377 PRINTS Actin signature 142 161 IPR004000 -
Lcy4g0291 377 PRINTS Actin signature 117 130 IPR004000 -
Lcy4g0291 377 PRINTS Actin signature 28 37 IPR004000 -
Lcy4g0291 377 FunFam Actin, alpha skeletal muscle 3 175 - -
Lcy4g0291 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Lcy4g0291 377 FunFam Putative actin-related protein 5 341 369 - -
Lcy4g0291 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Lcy4g0291 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2296 Lcy-Chr10:46584570 Lcy4g0291 Lcy-Chr4:3562557 3.75E-87 dispersed
Lcy11g0967 Lcy-Chr11:29317753 Lcy4g0291 Lcy-Chr4:3562557 5.34E-65 dispersed
Lcy2g0448 Lcy-Chr2:3742011 Lcy4g0291 Lcy-Chr4:3562557 1.07E-61 dispersed
Lcy4g0291 Lcy-Chr4:3562557 Lcy5g0597 Lcy-Chr5:6867794 2.79E-268 dispersed
Lcy4g0291 Lcy-Chr4:3562557 Lcy8g0203 Lcy-Chr8:5066839 2.42E-253 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0291 K10355 - csv:101214459 755.362