Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0292 ATGGCGCCTGCATTTGAGTTGCAGCAAAAGGAGAGCTTATGCAGCAGCCCTCATAAACAAGATCCCCTCAATTGGGGACTGGCGGCCGACTCTCTCAAGGGAAGCCATCTCGACGAGGTGAAGCGCATGGTGGAAGAGTACCGAAGGCCTCTAGTTAAACTTGGTGGACAGAACCTCACCATTTCTCAAGTGGCTGCTATTGCCACTCGTGATAATGATGTGATGGTTGAATTGGCTGAGTCCGCCAGAGCTGGTGTCAAAGCTAGTAGTGATTGGGTGATGGAGAGTATGAACAAAGGTACTGATAGTTATGGTGTCACGACTGGTTTTGGTGCCACCTCCCATAGAAGAACCAACCAGGGTGGAGCTCTTCAAAAGGAGTTGATTCGATTTTTGAATGCTGGCATTTTTGGAAATGGGGCTGAGTCCAACCATACTTTGCCTCATTCCGCCACCAGAGCAGCCATGTTGGTTAGAATCAACACTCTCCTCCAAGGCTATTCGGGCATCAGATTTGAGATCTTGGAAGCCATCACTAGTCTTCTCAACCACAATGTCACCCCTTGTTTGCCATTACGGGGCACAATTACAGCATCTGGGGATTTGGTTCCTTTGTCCTACATTGCTGGCCTACTAACGGGTCGTCACAATTCCAAAGCCATCGGACCCAATGGCGAAACCCTTGATGCAGAGGCTGCTTTTGAACAAGCGTGTATTTCATCTGGTTTCTTTGAGTTGCAACCTAAGGAGGGGCTCGCTCTCGTCAATGGCACTGCCGTCGGTTCTGGGCTCGCTTCCATTGTTCTCTTCGAGGCAAATGTTTTGGCTGTTTTGTCAGAAATTTTATCAGCCATTTTTGCTGAAGTCATGCAAGGAAAACCAGAGTTCACCGATCATTTGACCCACAAGTTGAAGCACCACCCTGGTCAAATTGAAGCTGCAGCAATCATGGAACATATTTTGGATGGAAGCTCGTACATGAAAACTGCAAAGAAGTTGCACGAGATTGATCCCCTCCAAAAACCTAAACAAGATCGTTATGCTCTTAGAACTTCACCTCAATGGCTCGGTCCTCTAATCGAAGTGATTCGATTCTCCACCAAGTCTATCGAGCGAGAGATCAATTCAGTAAACGATAACCCTTTGATTGATGTTTCAAGAAATAAGGCACTGCATGGAGGCAACTTTCAAGGAACACCCATCGGAGTTTCCATGGACAACACTCGCTTGGCCATTGCATCGATTGGAAAGCTCATGTTTGCCCAATTTTCAGAACTTGTCAATGATTTTTACAACAATGGTTTGCCTTCCAATCTTTCGGCCAGTAGAAACCCAAGCTTAGATTATGGGTTTAAAGGTGCTGAAATTGCTATGGCTTCATACTGCTCCGAGCTTCAATATCTGGCAAATCCTGTAACAAGTCATGTTCAAAGTGCTGAGCAACACAACCAAGATGTCAACTCCCTTGGTTTAATCTCTTCGAGGAAGACAGCTGAAGCCATTGACATTTTGAAACTCATGTCTTCCACATTTTTGGTTGCACTCTGCCAAGCAATTGACTTGAGGCATTTGGAGGAAAACTTGAAAAGTACTGTTAAAAGTACTGTAAGTCAAGTGGCCAAAAAAGTGTTGACCACATCCTTTGACGGTGCTCTTCACCCATCAAGATTTTGCGAGAAAGATCTTCTCAAAGTTGTTGACAGAGAATACACATTTGCATACATTGATGATCCATGCAGTGCTACTTACCCATTGATGCAAAAACTGAGACAGGTTCTTGTTGAACATGCGCTCACCAATGGTGACAATGAAAAGAACACAAATACTTCCATCTTCCAAAAGATTGGTGCTTTCGAAAAGGAGTTAAAGGAAGTTATACCAAGGGAAGTGGAAAATGCAAGGTTGGCATATGAGAGTGGAAATTCCAAAATTGAAAATCAAATCAAGGATTGTAGATCTTATCCACTATACAAGTTTGTGAGAGAAGAGCTAGGAACAAAATTGCTGACCGGAGAAAAGGTGATATCCCCAGGAGAAGAGTGTGAGAAGGTATTTGCAGCTTTGTGCCAAGGAAAGATGATTGACTCCATTCTAGAGTGCTTAAAAGAATGGAATGGTGCTCCAATCCCTATTTGCTAA 2139 44.27 MAPAFELQQKESLCSSPHKQDPLNWGLAADSLKGSHLDEVKRMVEEYRRPLVKLGGQNLTISQVAAIATRDNDVMVELAESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNAGIFGNGAESNHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITSLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPNGETLDAEAAFEQACISSGFFELQPKEGLALVNGTAVGSGLASIVLFEANVLAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSTVSQVAKKVLTTSFDGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALTNGDNEKNTNTSIFQKIGAFEKELKEVIPREVENARLAYESGNSKIENQIKDCRSYPLYKFVREELGTKLLTGEKVISPGEECEKVFAALCQGKMIDSILECLKEWNGAPIPIC 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3572410 3574548 - Maker00006192 Lcy4g0292 629818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0292 712 Gene3D - 525 646 IPR023144 -
Lcy4g0292 712 Gene3D - 13 258 IPR024083 -
Lcy4g0292 712 FunFam Phenylalanine ammonia-lyase 12 258 - -
Lcy4g0292 712 NCBIfam phenylalanine ammonia-lyase 21 702 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Lcy4g0292 712 FunFam Phenylalanine ammonia-lyase 525 646 - -
Lcy4g0292 712 SUPERFAMILY L-aspartase-like 21 712 IPR008948 GO:0003824(InterPro)
Lcy4g0292 712 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 194 210 IPR022313 GO:0016841(InterPro)
Lcy4g0292 712 CDD PAL-HAL 57 522 IPR001106 -
Lcy4g0292 712 Gene3D Fumarase/aspartase (Central domain) 259 707 - -
Lcy4g0292 712 PANTHER HISTIDINE AMMONIA-LYASE 18 712 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lcy4g0292 712 FunFam Phenylalanine ammonia-lyase 259 558 - -
Lcy4g0292 712 Pfam Aromatic amino acid lyase 59 535 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0972 Lcy-Chr11:29415669 Lcy4g0292 Lcy-Chr4:3572410 0 dispersed
Lcy1g1358 Lcy-Chr1:13140870 Lcy4g0292 Lcy-Chr4:3572410 3.52E-80 dispersed
Lcy1g1362 Lcy-Chr1:13166095 Lcy4g0292 Lcy-Chr4:3572410 0 dispersed
Lcy4g0292 Lcy-Chr4:3572410 Lcy7g0646 Lcy-Chr7:5895435 0 dispersed
Lcy4g0292 Lcy-Chr4:3572410 Lcy4g0293 Lcy-Chr4:3579790 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0292 K10775 - csv:116401606 1310.82