Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0293 ATGGCACCTGCATTTGACTTGCACCAAAAAGAGAGCTTATGCAGCGCCCCTCACAGTCAGGATCCCCTCAACTGGGGGCTGGCGGCCGACTCCCTCAAGGGAAGCCATCTCGATGAGGTGAAGCGCATGGTGGAAGAGTTTCGGAGGCCTTTGGTGAAGCTTGGAGGACAGACCCTCACCATTTCCCAAGTGGCTGCCATTGCCACTCGTGATAATGATGTGATGGTTGAGTTGGCTGAGTCTGCCAGAGCTGGCGTTAAAGCTAGTAGTGATTGGGTCATGGAGAGTATGAACAAAGGCACCGATAGCTATGGTGTCACCACTGGATTTGGTGCCACCTCCCATAGAAGAACCAAGCAAGGTGGAGCTTTACAGAAGGAGCTTATTCGATTTCTCAATGCTGGCATCTTTGGAAATGGGGCTGAGTCCACTCACACTTTGCCTCACTCTGCCACCAGAGCAGCCATGTTGGTCAGAATCAACACTCTCCTTCAAGGTTACTCAGGCATTAGATTCGAGATCTTGGAAGCTATTGCTAGTCTTCTCAACCACAACGTCACTCCATGTTTGCCACTGCGGGGCACAATTACAGCATCTGGGGATTTGGTCCCTTTGTCATATATTGCTGGTCTACTAACGGGTCGTCACAATTCCAAAGCCATTGGACCAAATGGCGAAACCCTTGATGCAAAGGCTGCTTTTGAACAAGCAGGTATTCTGTCTAGTTTCTTTGAACTACAGCCTAAGGAAGGTCTTGCTCTTGTTAATGGCACTGCTGTTGGTTCTGGGCTTGCTTCCATTGTTCTCTTCGAGGCAAATATTTTGGCTGTTTTGTCAGAAATTCTATCTGCCATCTTTGCTGAGGTCATGCAAGGAAAGCCAGAGTTCACCGATCATTTGACCCATAAGTTGAAGCACCATCCTGGTCAAATTGAAGCCGCTGCAATCATGGAGCACATCTTAGATGGAAGCTCTTACATGAAAACTGCAAAGAAGCTCCACGAGATTGATCCTCTCCAAAAGCCCAAACAAGATCGTTATGCGCTTAGAACTTCACCTCAATGGCTCGGTCCTTTGATTGAAGTAATTCGATTCTCCACTAAGTCTATTGAGCGAGAGATCAATTCGGTAAATGATAACCCTTTGATTGATGTTTCGAGAAATAAGGCCCTGCATGGAGGCAACTTCCAAGGAACACCCATTGGAGTTTCTATGGACAATACTCGTTTGGCCATTGCATCAATTGGGAAGCTTATGTTTGCCCAATTTTCAGAACTTGTCAATGATTTTTACAACAATGGTTTGCCTTCCAATCTTTCTGCCAGTAGAAATCCGAGCTTAGATTATGGGTTTAAAGGTGCTGAAATTGCCATGGCTTCATACTGCTCTGAGCTTCAGTACCTTGCAGATCCTGTAACAAGTCATGTGCAAAGTGCTGAACAACACAACCAAGATGTTAACTCCCTTGGTTTAATCTCATCAAGGAAAACAGCTGAAGCTATTGACATTTTGAAGCTCATGTCTTCCACATTTTTAGTTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAAGAAAACTTGAAGAGCACTGTTAAAAGTACCGTAAGTCAAGTAGCCAAAAAAGTGTTGACCACATCCTTTGATGGTGCACTTCACCCATCAAGATTTTGTGAGAAAGATCTACTCCAAGTTGTTGACAGAGAATACACTTTTGCATACATCGATGATCCATGCAGTACAACTTATCCATTGATGCAAAAGTTGAGACAGGTTCTTGTTGAACATGCACTCACCAATGGTGACAATGAAAAGAACACAAACACTTCCATCTTCCAAAAGATTGGTGCTTTTGAAGAGGAGTTAAAGGCAATCCTACCAAGGGAAGTTGAAAATGCAAGGTTGGCATATGAGAATGGAAATTCTAAAATTGAAAATCAAATTAAGGATTGCAGATCTTATCCACTATACAAGTTTGTGAGAGAAGAACTAGGAACAAAATTGCTGACGGGAGAAAAAGTAATATCTCCAGGAGAAGAGTGCGAAAAGGTGTTTGCTGCTTTGTGTCAAGGAAAGATGATCGACTCCATTCTAGAATGCTTGAAAGAATGGAATGGTGCTCCAATTCCTATTTGTTAA 2139 43.81 MAPAFDLHQKESLCSAPHSQDPLNWGLAADSLKGSHLDEVKRMVEEFRRPLVKLGGQTLTISQVAAIATRDNDVMVELAESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGAESTHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIASLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPNGETLDAKAAFEQAGILSSFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLADPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSTVSQVAKKVLTTSFDGALHPSRFCEKDLLQVVDREYTFAYIDDPCSTTYPLMQKLRQVLVEHALTNGDNEKNTNTSIFQKIGAFEEELKAILPREVENARLAYENGNSKIENQIKDCRSYPLYKFVREELGTKLLTGEKVISPGEECEKVFAALCQGKMIDSILECLKEWNGAPIPIC 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3579790 3581928 + Maker00006243 Lcy4g0293 629819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0293 712 Pfam Aromatic amino acid lyase 59 535 IPR001106 -
Lcy4g0293 712 SUPERFAMILY L-aspartase-like 21 712 IPR008948 GO:0003824(InterPro)
Lcy4g0293 712 FunFam Phenylalanine ammonia-lyase 259 555 - -
Lcy4g0293 712 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 194 210 IPR022313 GO:0016841(InterPro)
Lcy4g0293 712 FunFam Phenylalanine ammonia-lyase 525 646 - -
Lcy4g0293 712 CDD PAL-HAL 57 522 IPR001106 -
Lcy4g0293 712 Gene3D Fumarase/aspartase (Central domain) 259 707 - -
Lcy4g0293 712 NCBIfam phenylalanine ammonia-lyase 21 702 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Lcy4g0293 712 PANTHER HISTIDINE AMMONIA-LYASE 16 712 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lcy4g0293 712 FunFam Phenylalanine ammonia-lyase 13 258 - -
Lcy4g0293 712 Gene3D - 525 646 IPR023144 -
Lcy4g0293 712 Gene3D - 13 258 IPR024083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1361 Lcy-Chr1:13155015 Lcy4g0293 Lcy-Chr4:3579790 0 dispersed
Lcy2g0946 Lcy-Chr2:8793689 Lcy4g0293 Lcy-Chr4:3579790 7.33E-292 dispersed
Lcy4g0293 Lcy-Chr4:3579790 Lcy7g0646 Lcy-Chr7:5895435 0 dispersed
Lcy4g0292 Lcy-Chr4:3572410 Lcy4g0293 Lcy-Chr4:3579790 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0293 K10775 - csv:116401606 1306.58