Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy4g0296 | ATGGATCAATCAGAGCGTCAGCAACAATCACAGCAGCCTGCAGGTGGCGTCGGTGCAGGCCAGTTATCATATTCTAATCCTTACCAAACGGCGCCAATGGTCGCCTCCGGAACTCCTGCTATTACGATTCCCCCAACTCAGCCACCGTCCAGTTTTTCTAATTCTCCGCATCAGCTTGCCTATCAGCAAGCTCAGCACTTTCACCACCAGCAGCAACAGCAGCAGCAGCAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTCCCCCTCGCCCGAATCAAGAAAATAATGAAAGCGGATGAAGACGTCCGAATGATTTCAGCTGAAGCACCAGTTATATTCGCAAAGGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACCTTACAGAAGAATGATATTGCAGCTGCAATTTCACGGACCGATGTCTTTGATTTCTTGGTCGATATTATTCCTAGAGACGAACTGAAAGAGGAAGGCCTCGGAATCACAAAAGCTTCCATTCCCGTAGTCGGTTCCCCTGCTGATCTTCCTTATTACTATGTTCCATCCCAGCATCCAGTGGGTGCTACAGGTATGATCATGGGGAAGCAATTAGATCAAGCAAACATGTACGGTGCTGCTTCCCAACAGCCCCGACCACCGATGCCTTTCATGCCATGGCCGCACACTCAAACTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGCATAG | 792 | 47.85 | MDQSERQQQSQQPAGGVGAGQLSYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGAASQQPRPPMPFMPWPHTQTQQQQQTQQQSDA | 263 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 3608183 | 3608974 | - | Maker00006223 | Lcy4g0296 | 629822 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy4g0296 | 263 | SUPERFAMILY | Histone-fold | 56 | 172 | IPR009072 | GO:0046982(InterPro) | |
| Lcy4g0296 | 263 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| Lcy4g0296 | 263 | Gene3D | Histone, subunit A | 61 | 178 | IPR009072 | GO:0046982(InterPro) | |
| Lcy4g0296 | 263 | FunFam | Nuclear transcription factor Y subunit gamma | 66 | 178 | - | - | |
| Lcy4g0296 | 263 | MobiDBLite | consensus disorder prediction | 247 | 263 | - | - | |
| Lcy4g0296 | 263 | Pfam | Core histone H2A/H2B/H3/H4 | 53 | 163 | IPR007125 | GO:0003677(InterPro) | |
| Lcy4g0296 | 263 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 80 | 250 | IPR050568 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER) | |
| Lcy4g0296 | 263 | MobiDBLite | consensus disorder prediction | 231 | 263 | - | - | |
| Lcy4g0296 | 263 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy2g2047 | Lcy-Chr2:39267745 | Lcy4g0296 | Lcy-Chr4:3608183 | 4.16E-80 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 19928 | None | None | None | None | Lcy | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy4g0296 | K08066 | - | csv:101213813 | 401.364 |