Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0296 ATGGATCAATCAGAGCGTCAGCAACAATCACAGCAGCCTGCAGGTGGCGTCGGTGCAGGCCAGTTATCATATTCTAATCCTTACCAAACGGCGCCAATGGTCGCCTCCGGAACTCCTGCTATTACGATTCCCCCAACTCAGCCACCGTCCAGTTTTTCTAATTCTCCGCATCAGCTTGCCTATCAGCAAGCTCAGCACTTTCACCACCAGCAGCAACAGCAGCAGCAGCAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTCCCCCTCGCCCGAATCAAGAAAATAATGAAAGCGGATGAAGACGTCCGAATGATTTCAGCTGAAGCACCAGTTATATTCGCAAAGGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACCTTACAGAAGAATGATATTGCAGCTGCAATTTCACGGACCGATGTCTTTGATTTCTTGGTCGATATTATTCCTAGAGACGAACTGAAAGAGGAAGGCCTCGGAATCACAAAAGCTTCCATTCCCGTAGTCGGTTCCCCTGCTGATCTTCCTTATTACTATGTTCCATCCCAGCATCCAGTGGGTGCTACAGGTATGATCATGGGGAAGCAATTAGATCAAGCAAACATGTACGGTGCTGCTTCCCAACAGCCCCGACCACCGATGCCTTTCATGCCATGGCCGCACACTCAAACTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGCATAG 792 47.85 MDQSERQQQSQQPAGGVGAGQLSYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGAASQQPRPPMPFMPWPHTQTQQQQQTQQQSDA 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3608183 3608974 - Maker00006223 Lcy4g0296 629822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0296 263 SUPERFAMILY Histone-fold 56 172 IPR009072 GO:0046982(InterPro)
Lcy4g0296 263 MobiDBLite consensus disorder prediction 1 36 - -
Lcy4g0296 263 Gene3D Histone, subunit A 61 178 IPR009072 GO:0046982(InterPro)
Lcy4g0296 263 FunFam Nuclear transcription factor Y subunit gamma 66 178 - -
Lcy4g0296 263 MobiDBLite consensus disorder prediction 247 263 - -
Lcy4g0296 263 Pfam Core histone H2A/H2B/H3/H4 53 163 IPR007125 GO:0003677(InterPro)
Lcy4g0296 263 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 80 250 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Lcy4g0296 263 MobiDBLite consensus disorder prediction 231 263 - -
Lcy4g0296 263 MobiDBLite consensus disorder prediction 1 56 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0296 K08066 - - csv:101213813 401.364
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g2047 Lcy-Chr2:39267745 Lcy4g0296 Lcy-Chr4:3608183 4.16E-80 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g0055 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 1.2e-88 323.6
Lcy2g2047 . 201 369 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.7 1.1e-52 204.1
Lcy4g0296 . 79 222 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 1.4e-52 203.8
Lcy2g2047 . 120 379 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.2 2.0e-54 209.9
Lcy4g0296 . 19 177 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.8 7.2e-49 191.4
Lcy2g0055 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 1.0e-42 171.0
Lcy2g2047 . 120 369 CCAAT-HAP5 Transcription Factor Family AT1G54830 57.6 5.9e-61 231.5
Lcy4g0296 . 25 221 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.9e-52 202.6
Lcy2g0055 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.5e-51 199.5
Lcy2g0055 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 5.0e-38 155.2
Lcy2g0055 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 1.0e-80 297.4
Lcy2g2047 . 201 369 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.2 1.6e-49 193.7
Lcy4g0296 . 79 230 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 2.7e-49 193.0
Lcy4g0296 . 43 210 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 1.8e-64 243.0
Lcy2g2047 . 173 337 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.0 6.6e-51 198.0
Lcy2g0055 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.6e-50 194.9
Lcy7g0738 . 65 344 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.5 8.8e-60 228.0
Lcy13g1687 . 58 190 CCAAT-HAP5 Transcription Factor Family AT5G43250 62.8 1.2e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19928 None None None None Lcy TF