Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0296 ATGGATCAATCAGAGCGTCAGCAACAATCACAGCAGCCTGCAGGTGGCGTCGGTGCAGGCCAGTTATCATATTCTAATCCTTACCAAACGGCGCCAATGGTCGCCTCCGGAACTCCTGCTATTACGATTCCCCCAACTCAGCCACCGTCCAGTTTTTCTAATTCTCCGCATCAGCTTGCCTATCAGCAAGCTCAGCACTTTCACCACCAGCAGCAACAGCAGCAGCAGCAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTCCCCCTCGCCCGAATCAAGAAAATAATGAAAGCGGATGAAGACGTCCGAATGATTTCAGCTGAAGCACCAGTTATATTCGCAAAGGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACCTTACAGAAGAATGATATTGCAGCTGCAATTTCACGGACCGATGTCTTTGATTTCTTGGTCGATATTATTCCTAGAGACGAACTGAAAGAGGAAGGCCTCGGAATCACAAAAGCTTCCATTCCCGTAGTCGGTTCCCCTGCTGATCTTCCTTATTACTATGTTCCATCCCAGCATCCAGTGGGTGCTACAGGTATGATCATGGGGAAGCAATTAGATCAAGCAAACATGTACGGTGCTGCTTCCCAACAGCCCCGACCACCGATGCCTTTCATGCCATGGCCGCACACTCAAACTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGCATAG 792 47.85 MDQSERQQQSQQPAGGVGAGQLSYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGAASQQPRPPMPFMPWPHTQTQQQQQTQQQSDA 263
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 3608183 3608974 - Maker00006223 Lcy4g0296 629822
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0296 263 SUPERFAMILY Histone-fold 56 172 IPR009072 GO:0046982(InterPro)
Lcy4g0296 263 MobiDBLite consensus disorder prediction 1 36 - -
Lcy4g0296 263 Gene3D Histone, subunit A 61 178 IPR009072 GO:0046982(InterPro)
Lcy4g0296 263 FunFam Nuclear transcription factor Y subunit gamma 66 178 - -
Lcy4g0296 263 MobiDBLite consensus disorder prediction 247 263 - -
Lcy4g0296 263 Pfam Core histone H2A/H2B/H3/H4 53 163 IPR007125 GO:0003677(InterPro)
Lcy4g0296 263 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 80 250 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Lcy4g0296 263 MobiDBLite consensus disorder prediction 231 263 - -
Lcy4g0296 263 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g2047 Lcy-Chr2:39267745 Lcy4g0296 Lcy-Chr4:3608183 4.16E-80 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19928 None None None None Lcy TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0296 K08066 - csv:101213813 401.364