Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy4g0300 | ATGGACAACATTACGGCCCAGCTCAAGCGGGGCATCTCCCGTCAGTTCTCCACCGGCTCCCTCCGCCGGACCCTCTCCCGCCAGTTCTCCCGCCAGTCCTCTCTCGACCCTCGAAGGAACAATCTCCGCTTCAGCTTCGGCCGCCAGTCCTCTCTCGACCCTATTCGCCGCTGTCCCGACGACGACAATGACCTCACCGTCCCCGAGAATCTCGACTCCACCATGCAGCTTCTCTTCATGGCCTGCCGTGGCGACGTCCGCGGCGTCGACGACTTGCTCAACGACGGCACCGACGTCAACAGCATCGACTTGGACGGCCGCACTGCTCTCCATATTGCCGCCTGCGAGGGCCATGCCGACGTTGTCAAGCTCCTTCTCAGCCGCAGGGCTAACATCGACGCCCGTGATCGTTGGGGGAGTACGGCTGCTGCAGATGCTAAGTATTATGGGAATACCGAAATTTACAACATTCTCAAGGCACGTGGAGCCAAAGTTCCGAAATTTAGGAAGACGCCAATGACTGTTGCAAATCCTAGGGAAGTTCCAGAGTACGAGCTTAATCCATTGGAGCTCCAGATTCGAAGGAGTGACGGTATATCAAAGGGGGCATATCAAGTTGCCAAATGGAATGGTACAAAAGTAGCCGTGAAAATTCTTGATAAAGATTGTTATTGTAACCCGGATTCTATAAATGCATTCAAACATGAGTTAACATTATTGGAAAAGGTTCGACATCCTAACGTAGTTCAGTTTGTTGGCGCCGTTACTCAGAATTTGCCGATGATGATCGTTTCCGAATACCACCCAAAGGGTGATTTAGGTTGCTATCTTCAAAAGAAAGGTCGTCTATCTCCATCTAAAGCCTTAAGATTCGCCCTCGATATCGCTAGGGGAATGAACTATCTTCATGAATGCAAACCGGATCCGATTATCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGACAACTCAAGGTTGCTGGATTTGGCTTGATAAGATTGTCAAAAATGTCCCCTGACAAAGCAAAACTAGCTCAGCCAGTGGTTATTGACTATTCGAACTTGTACTTAGCCCCCGAAATTTACAACGATCAAATATTTGATAGAAGCGTCGATGCCTTTTCGTTTGGTCTCATTCTATACGAGATGGTTGAGGGTATTCAGCCATTCCATCCCAGGCCTCCAGAAGAGGTTGCCAAAGCTATTTGTATAGAAGGAAAGAGACCTCCATTTAAGATCAAATCGAAAAGTTATCCACCTGATCTAAAAGAATTGATTGAAGAATGCTGGGATCCAGAACCTGTTGTGAGGCCTACTTTCTCTGAAATTATTGTAAGGTTGGATAAAATAGTTGCCAACTGCTCAAAACAAGGATGGTGGAAAGACACATTTAAACTTCCCTGGTATGTTCTTTTCATTGTTAAATGCTTCTGTACAACTATAGTTTTCTTGCGGTCTCATTTGATAACTCATCCTTTGCTCACTTATGGTGAGTTAAAGGATGATCTAAGACGCGCAAATGTGTTGGCGCTTTCTGTTGCTACCACCGGTATTCTTCCATTTCCTTTCTCTTGCGCTTTCTTTTTCTCCTTCCGTTTCTGCTCAGCTGCTCACTCTTCGAAGCTTGACGCCCTGAGTGCCTATGGCTATGTGATCTTGTCGATTTTTATTGGTGGCGCTGATTATGATTTATCATTTCTTCCGGAGTTCATTGGATTGGATTATACTTTGATAATGGCTTCCAATGCAATTTTTAGACAGAAGAGGTTTATTTCTCATTATGGGAACTCGTACATACGCACAATTCAAAGTTTACAGTGGACTGGGCATGTTGGTCAGAATACTGGCTCACTTGATTCTATTTCCAATAATGATGATCCCTCTGCTATTCCAAATCATGGTATCGGAAATAGAATTGCACCTCCTGCCAAGAAAAGCGAATTGCTTAATTTTACAGGACTTCAGAAGTTTAGGCATATATGCTATAGCATTCCAATATCAAATCATGGAGATTTTAATGTTTATACTCCTGGTGGAATTGGATTGATATCACGATCGGTCCGGAATGCGTCCACTTCTGCAGCTAAACAACCCGATTTGACCAGTGATGAAGAGGAGAACAATGAGTTGGTTGCTAAAAAGAGGAAGGAAGCATCTCCGGAGGAATGCGATCAAGCTGTGGAAGGTCTGAGCACTGCCAAAGCCAAAGCAAAGGCTAGGCGATTACAAGAGTCTCAAAGCATAGTTACCGCCACTTTGCGAAGACTATGGGCAGTTGTCATAGGGATAGGTCCTGCTTTAAGGGCTGTTGCTTCAATGAGCAGGGAGGATTGGGCAAAGAAACTTGTTCACTGGAAAGAAGAATTTGTATCAACCTTACAACATTACTGGTTGGGTTTCAAGCTTTTGTGGGCTGATGTGAGGATTAGTTCCAGATTGCTTCTAAAACTTGCTGGTGGGAAGAATCTGTCAAGGCGAGAGAGACAGCAGCTAACCCGGACCACAGCCGATATCTTTAGGCTGGTTCCTTTTGCTGTTTTTATCATAGTTCCATTCATGGAATTTCTGCTGCCAGTCTTTCTTAAATTATTTCCCAACATGTTACCATCAACTTTTCAAGACAAGATGAAAGAACAGGAAGCATTGAAAAGGAAGCTTAATGCAAGAATAGAGTATGCTAAGTTCCTTCAAGACACGGCCAAAGAAATGGCTAAAGAAGTTCAAAACTCGAGAAGTGGAGAAATTAAGAAGACAGCTGAAGATCTTGATGAGTTTTTGACCAGGTTGAGGACTGGTGCTCGTGTATCTAATGAGGAAATTTTAGGTTTTGCCAAGCTTTTCAATGATGAACTCACATTAGATAATATCAGCAGGCCTCGACTAGTAAATATGTGCAAGTACATGGGCATCAGCCCTTTCGGAACTGATGCATATTTACGATATATGCTCCGTAAAAGATTGCAGTGGATAAAGGAAGATGATAAGTTAATACAAGCAGAGGGTGTGGAGTCCCTTTCTGAATCTGAGCTTCGTGAAGATTGTCGGGAGAGAGGCATGCTTGGATTGCTCTCGGTAGAAGAAATGCGCCAACAGCTTCGTGATTGGTTGGATCTGTCACTTAACCATTCTGTTCCATCTTCACTTTTGATCCTTTCAAGAGCATTCACAGTATCTGGAAAGTTGAAACCGGAGGAAGCTGTCCTGGCTACACTGTCTTCTCTGCCAGATGAGGTTGTAGACACCGTTGGTGTTACTGCTCTGCCATCTGAAGATTCCATATCAGAAAGGAGGAGAAAGTTAGAATTCCTTGAGATGCAGGAGGAAATGATCAAGGAGGAGGAGGAGAAAGAGGAAGAGGAACAAGCTAAAATAAAGGAATCCAAATCCAGCCAAGAAGATATAGCTCTGAAGGAGATGGTCAACCCGATGGCAAGAGAAGCTATAGAACAAGCTAGAGCAAAAGCTTCAGAAAAACAAGAGCACCTCTGTGAAGTCAGTCGTGCATTGGCTGTTTTAGCTTCTGCCTCTTCTGTCAGTAGGGAGCGTGAAGAATTCCTGCAGCTTGTGAATAAGGAGATAGAACTCTATAATAGCATGGTAGGAAGAGAAGGCACAGATGGTGAAAAGGAGGTCATGGAGGCATATAGAGCTGCTCGAGAAGAAAGTGATCAATCTACTGAAATGTCAGAAGGAGATGAGATTTCATCAGCACTTGTTGAAAGAGTTGATGCAATGCTCCAAAAACTAGAAAAGGAAATCGATGATGTGGATGCCAAAATTGGTGATCGTTGGCAATTACTAGACAGGAACGCTTTGAAAAAGTATTTCACTCACAAACGGGATTTTGATGGTAAAGTAACTCCTGAAGAGGTTGCAGCTGCTGCTATGTACTTAAAAGATACATTAGGAAAGGAAGGCATCCAAGAACTTATCAGCAGTCTTTCCAAAGATAAAGAGGGTAAAATTCTTGTAGAAGACATTGTGAGATTGGGCAGTCAGGCTGAAGACGCCAACTCTTGA | 4032 | 43.95 | MDNITAQLKRGISRQFSTGSLRRTLSRQFSRQSSLDPRRNNLRFSFGRQSSLDPIRRCPDDDNDLTVPENLDSTMQLLFMACRGDVRGVDDLLNDGTDVNSIDLDGRTALHIAACEGHADVVKLLLSRRANIDARDRWGSTAAADAKYYGNTEIYNILKARGAKVPKFRKTPMTVANPREVPEYELNPLELQIRRSDGISKGAYQVAKWNGTKVAVKILDKDCYCNPDSINAFKHELTLLEKVRHPNVVQFVGAVTQNLPMMIVSEYHPKGDLGCYLQKKGRLSPSKALRFALDIARGMNYLHECKPDPIIHCDLKPKNILLDNGGQLKVAGFGLIRLSKMSPDKAKLAQPVVIDYSNLYLAPEIYNDQIFDRSVDAFSFGLILYEMVEGIQPFHPRPPEEVAKAICIEGKRPPFKIKSKSYPPDLKELIEECWDPEPVVRPTFSEIIVRLDKIVANCSKQGWWKDTFKLPWYVLFIVKCFCTTIVFLRSHLITHPLLTYGELKDDLRRANVLALSVATTGILPFPFSCAFFFSFRFCSAAHSSKLDALSAYGYVILSIFIGGADYDLSFLPEFIGLDYTLIMASNAIFRQKRFISHYGNSYIRTIQSLQWTGHVGQNTGSLDSISNNDDPSAIPNHGIGNRIAPPAKKSELLNFTGLQKFRHICYSIPISNHGDFNVYTPGGIGLISRSVRNASTSAAKQPDLTSDEEENNELVAKKRKEASPEECDQAVEGLSTAKAKAKARRLQESQSIVTATLRRLWAVVIGIGPALRAVASMSREDWAKKLVHWKEEFVSTLQHYWLGFKLLWADVRISSRLLLKLAGGKNLSRRERQQLTRTTADIFRLVPFAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKMKEQEALKRKLNARIEYAKFLQDTAKEMAKEVQNSRSGEIKKTAEDLDEFLTRLRTGARVSNEEILGFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRKRLQWIKEDDKLIQAEGVESLSESELREDCRERGMLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLKPEEAVLATLSSLPDEVVDTVGVTALPSEDSISERRRKLEFLEMQEEMIKEEEEKEEEEQAKIKESKSSQEDIALKEMVNPMAREAIEQARAKASEKQEHLCEVSRALAVLASASSVSREREEFLQLVNKEIELYNSMVGREGTDGEKEVMEAYRAAREESDQSTEMSEGDEISSALVERVDAMLQKLEKEIDDVDAKIGDRWQLLDRNALKKYFTHKRDFDGKVTPEEVAAAAMYLKDTLGKEGIQELISSLSKDKEGKILVEDIVRLGSQAEDANS | 1343 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3693348 | 3713106 | + | Maker00006296 | Lcy4g0300 | 629826 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy4g0300 | 1343 | SUPERFAMILY | Ankyrin repeat | 73 | 176 | IPR036770 | - | |
Lcy4g0300 | 1343 | Gene3D | Phosphorylase Kinase; domain 1 | 188 | 268 | - | - | |
Lcy4g0300 | 1343 | Pfam | Protein tyrosine and serine/threonine kinase | 200 | 450 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy4g0300 | 1343 | Pfam | LETM1-like, RBD | 827 | 1060 | IPR033122 | GO:0043022(InterPro) | |
Lcy4g0300 | 1343 | PANTHER | LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN | 687 | 1242 | IPR044202 | GO:0005743(InterPro)|GO:0006875(PANTHER) | |
Lcy4g0300 | 1343 | SMART | serkin_6 | 193 | 455 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy4g0300 | 1343 | Gene3D | Transferase(Phosphotransferase) domain 1 | 269 | 468 | - | - | |
Lcy4g0300 | 1343 | FunFam | Integrin-linked protein kinase family | 269 | 467 | - | - | |
Lcy4g0300 | 1343 | Pfam | Ankyrin repeats (3 copies) | 78 | 165 | IPR002110 | GO:0005515(InterPro) | |
Lcy4g0300 | 1343 | MobiDBLite | consensus disorder prediction | 1120 | 1134 | - | - | |
Lcy4g0300 | 1343 | Coils | Coil | 1097 | 1134 | - | - | |
Lcy4g0300 | 1343 | Gene3D | - | 54 | 184 | IPR036770 | - | |
Lcy4g0300 | 1343 | MobiDBLite | consensus disorder prediction | 703 | 726 | - | - | |
Lcy4g0300 | 1343 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 310 | 322 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy4g0300 | 1343 | CDD | STKc_MAP3K-like | 199 | 451 | - | - | |
Lcy4g0300 | 1343 | ProSiteProfiles | Protein kinase domain profile. | 189 | 455 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy4g0300 | 1343 | SUPERFAMILY | Protein kinase-like (PK-like) | 201 | 451 | IPR011009 | - | |
Lcy4g0300 | 1343 | ProSiteProfiles | Ankyrin repeat profile. | 105 | 137 | IPR002110 | GO:0005515(InterPro) | |
Lcy4g0300 | 1343 | ProSiteProfiles | Letm1 ribosome-binding (RBD) domain profile. | 888 | 1091 | IPR033122 | GO:0043022(InterPro) | |
Lcy4g0300 | 1343 | Coils | Coil | 1243 | 1263 | - | - | |
Lcy4g0300 | 1343 | SMART | ANK_2a | 105 | 134 | IPR002110 | GO:0005515(InterPro) | |
Lcy4g0300 | 1343 | SMART | ANK_2a | 73 | 101 | IPR002110 | GO:0005515(InterPro) | |
Lcy4g0300 | 1343 | SMART | ANK_2a | 138 | 167 | IPR002110 | GO:0005515(InterPro) | |
Lcy4g0300 | 1343 | ProSiteProfiles | Ankyrin repeat region circular profile. | 105 | 137 | - | - | |
Lcy4g0300 | 1343 | MobiDBLite | consensus disorder prediction | 1114 | 1134 | - | - | |
Lcy4g0300 | 1343 | FunFam | Integrin-linked protein kinase 1 | 47 | 184 | - | - | |
Lcy4g0300 | 1343 | FunFam | serine/threonine-protein kinase STY46-like | 186 | 269 | - | - | |
Lcy4g0300 | 1343 | MobiDBLite | consensus disorder prediction | 697 | 726 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy4g0300 | Lcy-Chr4:3693348 | Lcy4g1524 | Lcy-Chr4:38441907 | 5.93E-293 | dispersed | |
Lcy4g0300 | Lcy-Chr4:3693348 | Lcy1g0240 | Lcy-Chr1:2179730 | 8.58E-88 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65842 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy4g0300 | K17800 | - | vvi:100257815 | 1050.04 |