Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0300 ATGGACAACATTACGGCCCAGCTCAAGCGGGGCATCTCCCGTCAGTTCTCCACCGGCTCCCTCCGCCGGACCCTCTCCCGCCAGTTCTCCCGCCAGTCCTCTCTCGACCCTCGAAGGAACAATCTCCGCTTCAGCTTCGGCCGCCAGTCCTCTCTCGACCCTATTCGCCGCTGTCCCGACGACGACAATGACCTCACCGTCCCCGAGAATCTCGACTCCACCATGCAGCTTCTCTTCATGGCCTGCCGTGGCGACGTCCGCGGCGTCGACGACTTGCTCAACGACGGCACCGACGTCAACAGCATCGACTTGGACGGCCGCACTGCTCTCCATATTGCCGCCTGCGAGGGCCATGCCGACGTTGTCAAGCTCCTTCTCAGCCGCAGGGCTAACATCGACGCCCGTGATCGTTGGGGGAGTACGGCTGCTGCAGATGCTAAGTATTATGGGAATACCGAAATTTACAACATTCTCAAGGCACGTGGAGCCAAAGTTCCGAAATTTAGGAAGACGCCAATGACTGTTGCAAATCCTAGGGAAGTTCCAGAGTACGAGCTTAATCCATTGGAGCTCCAGATTCGAAGGAGTGACGGTATATCAAAGGGGGCATATCAAGTTGCCAAATGGAATGGTACAAAAGTAGCCGTGAAAATTCTTGATAAAGATTGTTATTGTAACCCGGATTCTATAAATGCATTCAAACATGAGTTAACATTATTGGAAAAGGTTCGACATCCTAACGTAGTTCAGTTTGTTGGCGCCGTTACTCAGAATTTGCCGATGATGATCGTTTCCGAATACCACCCAAAGGGTGATTTAGGTTGCTATCTTCAAAAGAAAGGTCGTCTATCTCCATCTAAAGCCTTAAGATTCGCCCTCGATATCGCTAGGGGAATGAACTATCTTCATGAATGCAAACCGGATCCGATTATCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGACAACTCAAGGTTGCTGGATTTGGCTTGATAAGATTGTCAAAAATGTCCCCTGACAAAGCAAAACTAGCTCAGCCAGTGGTTATTGACTATTCGAACTTGTACTTAGCCCCCGAAATTTACAACGATCAAATATTTGATAGAAGCGTCGATGCCTTTTCGTTTGGTCTCATTCTATACGAGATGGTTGAGGGTATTCAGCCATTCCATCCCAGGCCTCCAGAAGAGGTTGCCAAAGCTATTTGTATAGAAGGAAAGAGACCTCCATTTAAGATCAAATCGAAAAGTTATCCACCTGATCTAAAAGAATTGATTGAAGAATGCTGGGATCCAGAACCTGTTGTGAGGCCTACTTTCTCTGAAATTATTGTAAGGTTGGATAAAATAGTTGCCAACTGCTCAAAACAAGGATGGTGGAAAGACACATTTAAACTTCCCTGGTATGTTCTTTTCATTGTTAAATGCTTCTGTACAACTATAGTTTTCTTGCGGTCTCATTTGATAACTCATCCTTTGCTCACTTATGGTGAGTTAAAGGATGATCTAAGACGCGCAAATGTGTTGGCGCTTTCTGTTGCTACCACCGGTATTCTTCCATTTCCTTTCTCTTGCGCTTTCTTTTTCTCCTTCCGTTTCTGCTCAGCTGCTCACTCTTCGAAGCTTGACGCCCTGAGTGCCTATGGCTATGTGATCTTGTCGATTTTTATTGGTGGCGCTGATTATGATTTATCATTTCTTCCGGAGTTCATTGGATTGGATTATACTTTGATAATGGCTTCCAATGCAATTTTTAGACAGAAGAGGTTTATTTCTCATTATGGGAACTCGTACATACGCACAATTCAAAGTTTACAGTGGACTGGGCATGTTGGTCAGAATACTGGCTCACTTGATTCTATTTCCAATAATGATGATCCCTCTGCTATTCCAAATCATGGTATCGGAAATAGAATTGCACCTCCTGCCAAGAAAAGCGAATTGCTTAATTTTACAGGACTTCAGAAGTTTAGGCATATATGCTATAGCATTCCAATATCAAATCATGGAGATTTTAATGTTTATACTCCTGGTGGAATTGGATTGATATCACGATCGGTCCGGAATGCGTCCACTTCTGCAGCTAAACAACCCGATTTGACCAGTGATGAAGAGGAGAACAATGAGTTGGTTGCTAAAAAGAGGAAGGAAGCATCTCCGGAGGAATGCGATCAAGCTGTGGAAGGTCTGAGCACTGCCAAAGCCAAAGCAAAGGCTAGGCGATTACAAGAGTCTCAAAGCATAGTTACCGCCACTTTGCGAAGACTATGGGCAGTTGTCATAGGGATAGGTCCTGCTTTAAGGGCTGTTGCTTCAATGAGCAGGGAGGATTGGGCAAAGAAACTTGTTCACTGGAAAGAAGAATTTGTATCAACCTTACAACATTACTGGTTGGGTTTCAAGCTTTTGTGGGCTGATGTGAGGATTAGTTCCAGATTGCTTCTAAAACTTGCTGGTGGGAAGAATCTGTCAAGGCGAGAGAGACAGCAGCTAACCCGGACCACAGCCGATATCTTTAGGCTGGTTCCTTTTGCTGTTTTTATCATAGTTCCATTCATGGAATTTCTGCTGCCAGTCTTTCTTAAATTATTTCCCAACATGTTACCATCAACTTTTCAAGACAAGATGAAAGAACAGGAAGCATTGAAAAGGAAGCTTAATGCAAGAATAGAGTATGCTAAGTTCCTTCAAGACACGGCCAAAGAAATGGCTAAAGAAGTTCAAAACTCGAGAAGTGGAGAAATTAAGAAGACAGCTGAAGATCTTGATGAGTTTTTGACCAGGTTGAGGACTGGTGCTCGTGTATCTAATGAGGAAATTTTAGGTTTTGCCAAGCTTTTCAATGATGAACTCACATTAGATAATATCAGCAGGCCTCGACTAGTAAATATGTGCAAGTACATGGGCATCAGCCCTTTCGGAACTGATGCATATTTACGATATATGCTCCGTAAAAGATTGCAGTGGATAAAGGAAGATGATAAGTTAATACAAGCAGAGGGTGTGGAGTCCCTTTCTGAATCTGAGCTTCGTGAAGATTGTCGGGAGAGAGGCATGCTTGGATTGCTCTCGGTAGAAGAAATGCGCCAACAGCTTCGTGATTGGTTGGATCTGTCACTTAACCATTCTGTTCCATCTTCACTTTTGATCCTTTCAAGAGCATTCACAGTATCTGGAAAGTTGAAACCGGAGGAAGCTGTCCTGGCTACACTGTCTTCTCTGCCAGATGAGGTTGTAGACACCGTTGGTGTTACTGCTCTGCCATCTGAAGATTCCATATCAGAAAGGAGGAGAAAGTTAGAATTCCTTGAGATGCAGGAGGAAATGATCAAGGAGGAGGAGGAGAAAGAGGAAGAGGAACAAGCTAAAATAAAGGAATCCAAATCCAGCCAAGAAGATATAGCTCTGAAGGAGATGGTCAACCCGATGGCAAGAGAAGCTATAGAACAAGCTAGAGCAAAAGCTTCAGAAAAACAAGAGCACCTCTGTGAAGTCAGTCGTGCATTGGCTGTTTTAGCTTCTGCCTCTTCTGTCAGTAGGGAGCGTGAAGAATTCCTGCAGCTTGTGAATAAGGAGATAGAACTCTATAATAGCATGGTAGGAAGAGAAGGCACAGATGGTGAAAAGGAGGTCATGGAGGCATATAGAGCTGCTCGAGAAGAAAGTGATCAATCTACTGAAATGTCAGAAGGAGATGAGATTTCATCAGCACTTGTTGAAAGAGTTGATGCAATGCTCCAAAAACTAGAAAAGGAAATCGATGATGTGGATGCCAAAATTGGTGATCGTTGGCAATTACTAGACAGGAACGCTTTGAAAAAGTATTTCACTCACAAACGGGATTTTGATGGTAAAGTAACTCCTGAAGAGGTTGCAGCTGCTGCTATGTACTTAAAAGATACATTAGGAAAGGAAGGCATCCAAGAACTTATCAGCAGTCTTTCCAAAGATAAAGAGGGTAAAATTCTTGTAGAAGACATTGTGAGATTGGGCAGTCAGGCTGAAGACGCCAACTCTTGA 4032 43.95 MDNITAQLKRGISRQFSTGSLRRTLSRQFSRQSSLDPRRNNLRFSFGRQSSLDPIRRCPDDDNDLTVPENLDSTMQLLFMACRGDVRGVDDLLNDGTDVNSIDLDGRTALHIAACEGHADVVKLLLSRRANIDARDRWGSTAAADAKYYGNTEIYNILKARGAKVPKFRKTPMTVANPREVPEYELNPLELQIRRSDGISKGAYQVAKWNGTKVAVKILDKDCYCNPDSINAFKHELTLLEKVRHPNVVQFVGAVTQNLPMMIVSEYHPKGDLGCYLQKKGRLSPSKALRFALDIARGMNYLHECKPDPIIHCDLKPKNILLDNGGQLKVAGFGLIRLSKMSPDKAKLAQPVVIDYSNLYLAPEIYNDQIFDRSVDAFSFGLILYEMVEGIQPFHPRPPEEVAKAICIEGKRPPFKIKSKSYPPDLKELIEECWDPEPVVRPTFSEIIVRLDKIVANCSKQGWWKDTFKLPWYVLFIVKCFCTTIVFLRSHLITHPLLTYGELKDDLRRANVLALSVATTGILPFPFSCAFFFSFRFCSAAHSSKLDALSAYGYVILSIFIGGADYDLSFLPEFIGLDYTLIMASNAIFRQKRFISHYGNSYIRTIQSLQWTGHVGQNTGSLDSISNNDDPSAIPNHGIGNRIAPPAKKSELLNFTGLQKFRHICYSIPISNHGDFNVYTPGGIGLISRSVRNASTSAAKQPDLTSDEEENNELVAKKRKEASPEECDQAVEGLSTAKAKAKARRLQESQSIVTATLRRLWAVVIGIGPALRAVASMSREDWAKKLVHWKEEFVSTLQHYWLGFKLLWADVRISSRLLLKLAGGKNLSRRERQQLTRTTADIFRLVPFAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKMKEQEALKRKLNARIEYAKFLQDTAKEMAKEVQNSRSGEIKKTAEDLDEFLTRLRTGARVSNEEILGFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRKRLQWIKEDDKLIQAEGVESLSESELREDCRERGMLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLKPEEAVLATLSSLPDEVVDTVGVTALPSEDSISERRRKLEFLEMQEEMIKEEEEKEEEEQAKIKESKSSQEDIALKEMVNPMAREAIEQARAKASEKQEHLCEVSRALAVLASASSVSREREEFLQLVNKEIELYNSMVGREGTDGEKEVMEAYRAAREESDQSTEMSEGDEISSALVERVDAMLQKLEKEIDDVDAKIGDRWQLLDRNALKKYFTHKRDFDGKVTPEEVAAAAMYLKDTLGKEGIQELISSLSKDKEGKILVEDIVRLGSQAEDANS 1343
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 3693348 3713106 + Maker00006296 Lcy4g0300 629826
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0300 1343 SUPERFAMILY Ankyrin repeat 73 176 IPR036770 -
Lcy4g0300 1343 Gene3D Phosphorylase Kinase; domain 1 188 268 - -
Lcy4g0300 1343 Pfam Protein tyrosine and serine/threonine kinase 200 450 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g0300 1343 Pfam LETM1-like, RBD 827 1060 IPR033122 GO:0043022(InterPro)
Lcy4g0300 1343 PANTHER LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN 687 1242 IPR044202 GO:0005743(InterPro)|GO:0006875(PANTHER)
Lcy4g0300 1343 SMART serkin_6 193 455 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0300 1343 Gene3D Transferase(Phosphotransferase) domain 1 269 468 - -
Lcy4g0300 1343 FunFam Integrin-linked protein kinase family 269 467 - -
Lcy4g0300 1343 Pfam Ankyrin repeats (3 copies) 78 165 IPR002110 GO:0005515(InterPro)
Lcy4g0300 1343 MobiDBLite consensus disorder prediction 1120 1134 - -
Lcy4g0300 1343 Coils Coil 1097 1134 - -
Lcy4g0300 1343 Gene3D - 54 184 IPR036770 -
Lcy4g0300 1343 MobiDBLite consensus disorder prediction 703 726 - -
Lcy4g0300 1343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g0300 1343 CDD STKc_MAP3K-like 199 451 - -
Lcy4g0300 1343 ProSiteProfiles Protein kinase domain profile. 189 455 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0300 1343 SUPERFAMILY Protein kinase-like (PK-like) 201 451 IPR011009 -
Lcy4g0300 1343 ProSiteProfiles Ankyrin repeat profile. 105 137 IPR002110 GO:0005515(InterPro)
Lcy4g0300 1343 ProSiteProfiles Letm1 ribosome-binding (RBD) domain profile. 888 1091 IPR033122 GO:0043022(InterPro)
Lcy4g0300 1343 Coils Coil 1243 1263 - -
Lcy4g0300 1343 SMART ANK_2a 105 134 IPR002110 GO:0005515(InterPro)
Lcy4g0300 1343 SMART ANK_2a 73 101 IPR002110 GO:0005515(InterPro)
Lcy4g0300 1343 SMART ANK_2a 138 167 IPR002110 GO:0005515(InterPro)
Lcy4g0300 1343 ProSiteProfiles Ankyrin repeat region circular profile. 105 137 - -
Lcy4g0300 1343 MobiDBLite consensus disorder prediction 1114 1134 - -
Lcy4g0300 1343 FunFam Integrin-linked protein kinase 1 47 184 - -
Lcy4g0300 1343 FunFam serine/threonine-protein kinase STY46-like 186 269 - -
Lcy4g0300 1343 MobiDBLite consensus disorder prediction 697 726 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0300 Lcy-Chr4:3693348 Lcy4g1524 Lcy-Chr4:38441907 5.93E-293 dispersed
Lcy4g0300 Lcy-Chr4:3693348 Lcy1g0240 Lcy-Chr1:2179730 8.58E-88 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65842 None None None None Lcy PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0300 K17800 - vvi:100257815 1050.04