Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0364 ATGATAAATTGTTTGTTACTATCTGGCATCTGGATTTTCGGTTATATGGAGGCAAACAGCTCACTTGTGCATATGGTTTCTTCAGGGGACCAAGTAGATAATGAAGTTGATTCTGATAGATTGGAGCATGAACAGAGTTCAGATAGCCAATCGCATGCGTCTCAGGAGGATCCTGGAGGAACTAATGCATCAAAATCAGATATCAAATGCACGGCGGCTGCCTCGAAAACACTTGAAGAAGCTGTCAACCTGCCTGACGTTACAATCGAACAAGTGGATCGCGGAGGTATCTCTAATATAGTGTCTGAGAAAGTGACCCATAAGCCAATTACTGCGGACCAGGACTCACATCCTGATTTGAAAGTAAGTATCACCTCTACAATACGAGAGAAAGTGTCAGAGGATGGATATAACTGGCGGAAATATGGTCAGAAACTAGTAAAGGGAAATGTCTTTGTTAGAAGCTATTACAGATGTACGCATCCAACGTGCATGGTGAAAAAACAACTAGAGCGCACTCATGATGGGAAAATTACAGATACTGTTTACTTTGGCCAGCATGATCACCCTAAACCTCAACCTCACATTCCAGTTGCTGTTGGAGTTGCCATGGTTGAAGAAAAATTAGATGAACATGCTTCTAGAAGTTCACAAGGTAAGAAACTATGTAATTCATATCTTGTTTTGGTTATACTCGGAAGTTCTTTGATTTATTCCAGTGCCTCTGTACTTGAAGATAAGACCTCCATTGCGCTTGGCCAGACACCTCATCAAACTGGGCCGGTTGATACACTTCAACTGTCATCAGTCACGGCCAGCGATAATGTAAAAGATGAAGCTTTGAAAAGGTCTAGGATTAATGATGAGGATGACAGTGATGATACACCAGACTTGAAACGAGAGAAGAAAAGATGTAATATTGACGTGACAGTAGCAGACAAGTCAACAGTTGAATCTCGTGTTGTTGTTCAAACTCCTAGTGAGGTTGACATTCTCAATGATGGATACCGCTGGCGGAAGTACGGACAGAAATTAGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACACGTAGAGAGGGCGTCTCATGATCCAAAAGTGGTGCTTACCACGTATGAGGGTCAGCACGACCATGATATGCCTCCTGCAAGGACAGTGACGTTGAACTCAGTTGGGGCCGCAGCAGCCCATAGTGATGAGATAAAAACAAAATCCGTCGGTAGTTCGATTAGCCATGATACGGTGGTTCATGCTAGTAAGGATCCTCGAAGCGATTCAAGTTCTGAAGGCAAATTAATTGAAAAGAATGGCACGTCGAATGCCACAGAAGCAAGTGATGGCATTGTACTCGATATGGTGGTAAATTCCAGTCCAGGAGTTGCGAGTGGACAAAATAAGCAGCTCAAAGTAGCAATTGAAAGCTAA 1458 42.94 MINCLLLSGIWIFGYMEANSSLVHMVSSGDQVDNEVDSDRLEHEQSSDSQSHASQEDPGGTNASKSDIKCTAAASKTLEEAVNLPDVTIEQVDRGGISNIVSEKVTHKPITADQDSHPDLKVSITSTIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDTVYFGQHDHPKPQPHIPVAVGVAMVEEKLDEHASRSSQGKKLCNSYLVLVILGSSLIYSSASVLEDKTSIALGQTPHQTGPVDTLQLSSVTASDNVKDEALKRSRINDEDDSDDTPDLKREKKRCNIDVTVADKSTVESRVVVQTPSEVDILNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKVVLTTYEGQHDHDMPPARTVTLNSVGAAAAHSDEIKTKSVGSSISHDTVVHASKDPRSDSSSEGKLIEKNGTSNATEASDGIVLDMVVNSSPGVASGQNKQLKVAIES 485
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 4589451 4591683 + Maker00006183 Lcy4g0364 629890
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0364 485 SMART WRKY_cls 133 191 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0364 485 SMART WRKY_cls 332 391 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0364 485 MobiDBLite consensus disorder prediction 253 275 - -
Lcy4g0364 485 Gene3D WRKY domain 119 193 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0364 485 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 171 406 IPR044810 GO:0003700(InterPro)
Lcy4g0364 485 FunFam WRKY transcription factor 57 318 392 - -
Lcy4g0364 485 MobiDBLite consensus disorder prediction 276 299 - -
Lcy4g0364 485 ProSiteProfiles WRKY domain profile. 128 192 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0364 485 MobiDBLite consensus disorder prediction 253 299 - -
Lcy4g0364 485 MobiDBLite consensus disorder prediction 51 66 - -
Lcy4g0364 485 SUPERFAMILY WRKY DNA-binding domain 128 192 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0364 485 SUPERFAMILY WRKY DNA-binding domain 324 392 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0364 485 Gene3D WRKY domain 319 385 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0364 485 MobiDBLite consensus disorder prediction 411 457 - -
Lcy4g0364 485 MobiDBLite consensus disorder prediction 31 66 - -
Lcy4g0364 485 FunFam WRKY transcription factor 122 193 - -
Lcy4g0364 485 Pfam WRKY DNA -binding domain 134 190 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0364 485 Pfam WRKY DNA -binding domain 333 390 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0364 485 MobiDBLite consensus disorder prediction 427 441 - -
Lcy4g0364 485 ProSiteProfiles WRKY domain profile. 327 392 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0364 485 MobiDBLite consensus disorder prediction 442 456 - -
Lcy4g0364 485 MobiDBLite consensus disorder prediction 33 50 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0364 Lcy-Chr4:4589451 Lcy6g1902 Lcy-Chr6:39836153 4.21E-67 dispersed
Lcy4g0364 Lcy-Chr4:4589451 Lcy6g1706 Lcy-Chr6:32737111 1.71E-75 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19931 None None None None Lcy TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0364 K18834 - csv:101212482 671.774