Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy4g0364 | ATGATAAATTGTTTGTTACTATCTGGCATCTGGATTTTCGGTTATATGGAGGCAAACAGCTCACTTGTGCATATGGTTTCTTCAGGGGACCAAGTAGATAATGAAGTTGATTCTGATAGATTGGAGCATGAACAGAGTTCAGATAGCCAATCGCATGCGTCTCAGGAGGATCCTGGAGGAACTAATGCATCAAAATCAGATATCAAATGCACGGCGGCTGCCTCGAAAACACTTGAAGAAGCTGTCAACCTGCCTGACGTTACAATCGAACAAGTGGATCGCGGAGGTATCTCTAATATAGTGTCTGAGAAAGTGACCCATAAGCCAATTACTGCGGACCAGGACTCACATCCTGATTTGAAAGTAAGTATCACCTCTACAATACGAGAGAAAGTGTCAGAGGATGGATATAACTGGCGGAAATATGGTCAGAAACTAGTAAAGGGAAATGTCTTTGTTAGAAGCTATTACAGATGTACGCATCCAACGTGCATGGTGAAAAAACAACTAGAGCGCACTCATGATGGGAAAATTACAGATACTGTTTACTTTGGCCAGCATGATCACCCTAAACCTCAACCTCACATTCCAGTTGCTGTTGGAGTTGCCATGGTTGAAGAAAAATTAGATGAACATGCTTCTAGAAGTTCACAAGGTAAGAAACTATGTAATTCATATCTTGTTTTGGTTATACTCGGAAGTTCTTTGATTTATTCCAGTGCCTCTGTACTTGAAGATAAGACCTCCATTGCGCTTGGCCAGACACCTCATCAAACTGGGCCGGTTGATACACTTCAACTGTCATCAGTCACGGCCAGCGATAATGTAAAAGATGAAGCTTTGAAAAGGTCTAGGATTAATGATGAGGATGACAGTGATGATACACCAGACTTGAAACGAGAGAAGAAAAGATGTAATATTGACGTGACAGTAGCAGACAAGTCAACAGTTGAATCTCGTGTTGTTGTTCAAACTCCTAGTGAGGTTGACATTCTCAATGATGGATACCGCTGGCGGAAGTACGGACAGAAATTAGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACACGTAGAGAGGGCGTCTCATGATCCAAAAGTGGTGCTTACCACGTATGAGGGTCAGCACGACCATGATATGCCTCCTGCAAGGACAGTGACGTTGAACTCAGTTGGGGCCGCAGCAGCCCATAGTGATGAGATAAAAACAAAATCCGTCGGTAGTTCGATTAGCCATGATACGGTGGTTCATGCTAGTAAGGATCCTCGAAGCGATTCAAGTTCTGAAGGCAAATTAATTGAAAAGAATGGCACGTCGAATGCCACAGAAGCAAGTGATGGCATTGTACTCGATATGGTGGTAAATTCCAGTCCAGGAGTTGCGAGTGGACAAAATAAGCAGCTCAAAGTAGCAATTGAAAGCTAA | 1458 | 42.94 | MINCLLLSGIWIFGYMEANSSLVHMVSSGDQVDNEVDSDRLEHEQSSDSQSHASQEDPGGTNASKSDIKCTAAASKTLEEAVNLPDVTIEQVDRGGISNIVSEKVTHKPITADQDSHPDLKVSITSTIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDTVYFGQHDHPKPQPHIPVAVGVAMVEEKLDEHASRSSQGKKLCNSYLVLVILGSSLIYSSASVLEDKTSIALGQTPHQTGPVDTLQLSSVTASDNVKDEALKRSRINDEDDSDDTPDLKREKKRCNIDVTVADKSTVESRVVVQTPSEVDILNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKVVLTTYEGQHDHDMPPARTVTLNSVGAAAAHSDEIKTKSVGSSISHDTVVHASKDPRSDSSSEGKLIEKNGTSNATEASDGIVLDMVVNSSPGVASGQNKQLKVAIES | 485 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 4589451 | 4591683 | + | Maker00006183 | Lcy4g0364 | 629890 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy4g0364 | 485 | SMART | WRKY_cls | 133 | 191 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy4g0364 | 485 | SMART | WRKY_cls | 332 | 391 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy4g0364 | 485 | MobiDBLite | consensus disorder prediction | 253 | 275 | - | - | |
| Lcy4g0364 | 485 | Gene3D | WRKY domain | 119 | 193 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy4g0364 | 485 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 171 | 406 | IPR044810 | GO:0003700(InterPro) | |
| Lcy4g0364 | 485 | FunFam | WRKY transcription factor 57 | 318 | 392 | - | - | |
| Lcy4g0364 | 485 | MobiDBLite | consensus disorder prediction | 276 | 299 | - | - | |
| Lcy4g0364 | 485 | ProSiteProfiles | WRKY domain profile. | 128 | 192 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy4g0364 | 485 | MobiDBLite | consensus disorder prediction | 253 | 299 | - | - | |
| Lcy4g0364 | 485 | MobiDBLite | consensus disorder prediction | 51 | 66 | - | - | |
| Lcy4g0364 | 485 | SUPERFAMILY | WRKY DNA-binding domain | 128 | 192 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy4g0364 | 485 | SUPERFAMILY | WRKY DNA-binding domain | 324 | 392 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy4g0364 | 485 | Gene3D | WRKY domain | 319 | 385 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy4g0364 | 485 | MobiDBLite | consensus disorder prediction | 411 | 457 | - | - | |
| Lcy4g0364 | 485 | MobiDBLite | consensus disorder prediction | 31 | 66 | - | - | |
| Lcy4g0364 | 485 | FunFam | WRKY transcription factor | 122 | 193 | - | - | |
| Lcy4g0364 | 485 | Pfam | WRKY DNA -binding domain | 134 | 190 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy4g0364 | 485 | Pfam | WRKY DNA -binding domain | 333 | 390 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy4g0364 | 485 | MobiDBLite | consensus disorder prediction | 427 | 441 | - | - | |
| Lcy4g0364 | 485 | ProSiteProfiles | WRKY domain profile. | 327 | 392 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy4g0364 | 485 | MobiDBLite | consensus disorder prediction | 442 | 456 | - | - | |
| Lcy4g0364 | 485 | MobiDBLite | consensus disorder prediction | 33 | 50 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy4g0364 | Lcy-Chr4:4589451 | Lcy6g1902 | Lcy-Chr6:39836153 | 4.21E-67 | dispersed | |
| Lcy4g0364 | Lcy-Chr4:4589451 | Lcy6g1706 | Lcy-Chr6:32737111 | 1.71E-75 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 19931 | None | None | None | None | Lcy | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy4g0364 | K18834 | - | csv:101212482 | 671.774 |