Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0365 ATGGGAACAGAGGACCAGGCTCTGGTTCAGGATTGTATTCCTGAGAATTTAGATCCTGCTCCCTTTCAGGATGAATATGCACCTGTGATATTTTCACAAGAAACCGTATCACATATAGTTTCCATTGACATGATGTCTGGAAAGGAAGACCGTGAAAACATCTTGCGAGCGAGGGCTTCAGGGAAGGGAGTGTTGACATCTCCTTTCAAGCTTCTAAAGTCCAATCACCTAGGTGTTGTACTCACTTTTGCTGTCTATAACACTGACCTTCCTCCTGATGCAACACCGGAGCAACGTATTGAAGCTACTGTTGGGTATCTAGGAGCATCTTATGATGTTCCATCACTGGTGGACAAGCTTCTGCACCAACTTTCCAGCAAACAATCAATTGTTGTTGATGTTTATGATACAACTAATGCATCTGCACCCATCAAGATGTATGGAACTGATGTAATTGATACTGGTCTATTGCACATTAGTAACCTGGATTTTGGAGACCCCCAAAGGAAGCATGAGATGCATTGCAGATTCAAGCAGAAGCCTCAATTACCATGGATGGCTATAAATGCATCAGTGGGAGTTCTAGTCATTACTTTACTTGTTGGCCATATATTTTATGCGGCCATAAGTCGAATCGCAAAAGTGGAGAATGACTATCGTGAGATGATGGGACTCAAAAGTCGTGCTGAAGCTGCAGATGTGGCAAAGTCTCAGTTTCTTGCAACTGTTTCTCACGAGATCAGGACGCCAATGAATGGTGTTTTAGGGATGCTAAAAATGCTGATGGACACTGATCTTGACCCAAACCAAATGGACTATGCCCAGACTGCATATGATAGTGGGAAAGAATTAATATCACTAATAAATGAGGTTCTTGACCAAGCTAAAATCGAATCAGGCAGGCTTGAACTTGAAGATGTACCATTTGATCCACGATCTTTACTGGATAATGTGCTGTCAATGTTCTCTGGGAAATGTCATGAGAAGGGAATAGAGTTAGCTGTTTATGTCTCTAATCTGGTCCCTGAAGTTCTCATTGGTGATCCTGGACGCTTCCGACAGATAATTACCAATCTCGTGGGAAATTCAATTAAGTTCACCAACAATGAAGGACACATATTTGTTACTGTACACCTGGCAGACGAAGTGAGGACTCCACTTGATGCAATGGACAGAGTGCTAAGACAAGGCTTAGATTTAGTAAAAGAGATGCCAAGAAAAAGCCATAATACATTAAGCGGGTTTCCAGTGGTCGAAAGGTGCAAGAGTTGGGAGCGTTTCGAGATATTTAATAGAACAGATGCGGTGCAGGAAGATGACTTAATTAAACTGCTTGTATCAGTCGAGGATACAGGTCATGGAATTCCTTTAGAAGCGCAAAGTCGAATTTTTATGCCTTTTATGCAAGCTGATAGTTCCACTTCACGCAAGTATGGTGGGACTGGAATAGGTTTGAGCATCAGCAAGTGTCTGGTGGCTTTAATGGGTGGAGAGATAGGTTTTGTGAGCCAACCTGGTGTTGGCAGCACATTTTCATTTACTGGATGTTTGAGAAAAGGCGATACGAGGTCTCTCGATACAAAGTGGCAGCAGAATGATCCAGCTGTACTAGATTTCCGAGGACTGCGAGCGTTAGTAATAGATAATAGAAGCATTAGAGCTGAGGTAACAAAATATCATCTCAAGAGGTTAGGGATCTCAGTAGATACAGTTTCAAGTCTGGTTTCAGCACATGAATACTCAACCAATAATTGCATCAAAAGTCCATCTAAACCTTTGGCCATGGTGCTTATCGACAAAGATGTATGGGATAAGGAAACCGGTCCGATGATTGCTCGTGTATTTAAAGAACACGGAGTAAATGGAAAAGAAGAATCAACAAAAAGTCCTAAGATCTTTCTCTTGGCTACCTCCAACAGCCCTCAAGAGACGAGAGCTCTCAAGTCGACCGGTTATGTTAATAATGTAATGGTAAAACCCCTTAGGCTCGGTGTCTTGATTGGATGCTTCCAGGAAGCGTTCGGGAAGGTAAATAGAAAGAAACCGTCTATTCTCGGGAACTTACTGAGAGAAAAGCAAATATTGGTAGTTGATGACAATGCAGTTAATAGAAGAGTTGCAGAAGGTGCTCTAAAGAAATATGGAGCAAAGGTCACCTGTGTGGAAAGTGGCAGAGCTGCTATTTCACTGTTACATCCACCACACAAGTTCCATGCTTGCTTCATGGATGTTCAGATGCCTGAGATGGATGGGTTTGAAGCAACAAAACAGATACGAGATATCGAAAATAAAGTTAACGAGGACATTGCTTCTGGGAAAGTATCGATCGAGATGTTTGGGAATGTGGCTCATTGGCATACACCAGTATTGGCCATGACAGCTGATGTGATTCAGTCTACAAATGAAGCATGTATGAACTGTGGGATGGATGGTTATGTCGCAAAGCCTTTCGAAGAAGAAAAGTTATATTCAGCGGTAGCTCGTTTCTTCGAGTCTGATGATTGA 2505 42.28 MGTEDQALVQDCIPENLDPAPFQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLPPDATPEQRIEATVGYLGASYDVPSLVDKLLHQLSSKQSIVVDVYDTTNASAPIKMYGTDVIDTGLLHISNLDFGDPQRKHEMHCRFKQKPQLPWMAINASVGVLVITLLVGHIFYAAISRIAKVENDYREMMGLKSRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDPNQMDYAQTAYDSGKELISLINEVLDQAKIESGRLELEDVPFDPRSLLDNVLSMFSGKCHEKGIELAVYVSNLVPEVLIGDPGRFRQIITNLVGNSIKFTNNEGHIFVTVHLADEVRTPLDAMDRVLRQGLDLVKEMPRKSHNTLSGFPVVERCKSWERFEIFNRTDAVQEDDLIKLLVSVEDTGHGIPLEAQSRIFMPFMQADSSTSRKYGGTGIGLSISKCLVALMGGEIGFVSQPGVGSTFSFTGCLRKGDTRSLDTKWQQNDPAVLDFRGLRALVIDNRSIRAEVTKYHLKRLGISVDTVSSLVSAHEYSTNNCIKSPSKPLAMVLIDKDVWDKETGPMIARVFKEHGVNGKEESTKSPKIFLLATSNSPQETRALKSTGYVNNVMVKPLRLGVLIGCFQEAFGKVNRKKPSILGNLLREKQILVVDDNAVNRRVAEGALKKYGAKVTCVESGRAAISLLHPPHKFHACFMDVQMPEMDGFEATKQIRDIENKVNEDIASGKVSIEMFGNVAHWHTPVLAMTADVIQSTNEACMNCGMDGYVAKPFEEEKLYSAVARFFESDD 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4591200 4601625 - Maker00006364 Lcy4g0365 629891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0365 834 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 221 301 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy4g0365 834 Gene3D - 299 519 IPR036890 -
Lcy4g0365 834 SUPERFAMILY CheY-like 690 830 IPR011006 -
Lcy4g0365 834 CDD HisKA 235 296 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy4g0365 834 CDD REC_hyHK_CKI1_RcsC-like 694 826 - -
Lcy4g0365 834 SMART REC_2 692 826 IPR001789 GO:0000160(InterPro)
Lcy4g0365 834 Pfam CHASE domain 22 147 IPR006189 -
Lcy4g0365 834 Pfam His Kinase A (phospho-acceptor) domain 235 300 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy4g0365 834 Gene3D - 207 298 - -
Lcy4g0365 834 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 289 514 IPR036890 -
Lcy4g0365 834 PANTHER TWO-COMPONENT HISTIDINE KINASE 11 829 IPR050956 -
Lcy4g0365 834 SMART HKATPase_4 347 519 IPR003594 -
Lcy4g0365 834 ProSiteProfiles Response regulatory domain profile. 543 674 IPR001789 GO:0000160(InterPro)
Lcy4g0365 834 ProSiteProfiles Histidine kinase domain profile. 242 519 IPR005467 -
Lcy4g0365 834 ProSiteProfiles Response regulatory domain profile. 693 830 IPR001789 GO:0000160(InterPro)
Lcy4g0365 834 CDD HATPase_EvgS-ArcB-TorS-like 352 517 - -
Lcy4g0365 834 PRINTS Bacterial sensor protein C-terminal signature 462 472 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lcy4g0365 834 PRINTS Bacterial sensor protein C-terminal signature 503 516 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lcy4g0365 834 PRINTS Bacterial sensor protein C-terminal signature 444 458 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lcy4g0365 834 PRINTS Bacterial sensor protein C-terminal signature 479 497 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lcy4g0365 834 FunFam Histidine kinase 4 3 181 - -
Lcy4g0365 834 Gene3D CHASE domain 3 181 IPR042240 -
Lcy4g0365 834 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 443 514 IPR003594 -
Lcy4g0365 834 Pfam Response regulator receiver domain 694 826 IPR001789 GO:0000160(InterPro)
Lcy4g0365 834 ProSiteProfiles CHASE domain profile. 1 174 IPR006189 -
Lcy4g0365 834 SUPERFAMILY CheY-like 538 675 IPR011006 -
Lcy4g0365 834 SMART CHASE_2 3 149 IPR006189 -
Lcy4g0365 834 Gene3D - 687 833 - -
Lcy4g0365 834 Gene3D - 536 679 - -
Lcy4g0365 834 FunFam Histidine kinase 3 687 834 - -
Lcy4g0365 834 SMART HisKA_10 235 300 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy4g0365 834 FunFam Histidine kinase 4 207 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1199 Lcy-Chr13:28515992 Lcy4g0365 Lcy-Chr4:4591200 1.74E-12 dispersed
Lcy4g0365 Lcy-Chr4:4591200 Lcy7g1375 Lcy-Chr7:20450681 6.07E-284 dispersed
Lcy4g0365 Lcy-Chr4:4591200 Lcy8g1364 Lcy-Chr8:40370520 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19932 None None None None Lcy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0365 K14489 - vvi:100263145 1238.79