Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0371 ATGGCCACCTCTGCTATCCAACAGTCCGCCTTTGCCGGCCAGGCTGCCTTGAAGCAGTCCAATGAGCTCGTCCGAAGGGTAGGCGCTGTCGGTGGCGGCCGCTTCACCATGCGGCGGACAGTCAAGAGTGCTCCACAGAGCATATGGTATGGGCCAGACCGCCCAAAATACTTGGGACCATTCTCTGAACAAACACCATCTTACCTGACTGGAGAGTTCCCTGGTGACTATGGATGGGACACAGCCGGTCTGTCGGCAGATCCCGAGACCTTCGCGAAGAACCGGGAGCTTGAGGTGATCCACTCCCGATGGGCCATGCTTGGTGCATTAGGTTGTGTCTTCCCTGAAATCCTTGCAAAGAATGGTGTCAAGTTTGGTGAATCAGTTTGGTTCAAGGCTGGTTCTCAGATCTTCTCTGAGGGTGGTCTAGATTACCTTGGCAACCCAAACCTCATCCATGCTCAGAGTATCCTTGCAATCTGGGCTTGCCAGGTTGTGCTCATGGGCTTTGTCGAAGGTTACAGAGTTGGTGGCGGTCCCCTTGGTGAAGGACTGGACCCAATTTACCCAGGAGGCGCCTTTGACCCACTGGGATTGGCTGATGACCCAGATGCATTTGCTGAGTTGAAGGTGAAGGAACTAAAGAATGGAAGGCTGGCAATGTTCTCCATGTTCGGATTCTTCGTCCAGGCTATCGTCACCGGAAAGGGTCCTATTGAGAATCTCTTTGACCATGTTGCAGATCCTGTTGCCAACAATGCATGGGCTTACGCCACCAACTTCGTACCCGGAAAATGA 798 53.26 MATSAIQQSAFAGQAALKQSNELVRRVGAVGGGRFTMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4641525 4643506 - Maker00006219 Lcy4g0371 629897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0371 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Lcy4g0371 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Lcy4g0371 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Lcy4g0371 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Lcy4g0371 265 Pfam Chlorophyll A-B binding protein 66 232 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1328 Lcy-Chr2:14718579 Lcy4g0371 Lcy-Chr4:4641525 1.18E-39 dispersed
Lcy4g0371 Lcy-Chr4:4641525 Lcy5g1745 Lcy-Chr5:40082418 1.76E-149 dispersed
Lcy4g0371 Lcy-Chr4:4641525 Lcy12g0389 Lcy-Chr12:4730039 2.61E-148 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0371 K08913 - csv:101212963 531.561