Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0391 ATGTCTTCAACTTCAACAAATAAGGCTGTGTGTTCTAAGACCAGCTGCGAGCGATCAAAACATGGGGCTCATGTAGTTGCACAGACCCCAATTGATGCAAAGCTTCATGTTGACTTTGAAGGATCTGAAAGGTTCTTTGATTACTCTGCGTCGGTTGATTTGAATGCCTCAAGTTCCACTAGCAATGTTCATGCCTCCACTGTACAGTCATACCTTCAGAACATTCAGAGAGGAAGTCTAGTTCAACCATTTGGTTGTATGATTGCTGTTGATGGGGAAAACTTGTCAGTCCTTGCATATAGTGAAAATGCCCCCGAAATGTTGGACTTGGCCCCACATGCTGTGCCTAACATCGAGCAGCAAGAAGCTCTAACTTTTGGATCAGATGTGCGAACACTTTTTCGATCCCCGGGAGCTGCCGCTTTACAGAAAGCAGCTGACTTTAAGGAAGTTAATCTTCTCAATCCTATACTGGTCCATTGCAAGACTTCAGGTAAACCATTTTATGCAATTTTGCATCGAGTAGACGTGGGATTAATTATAGATTTGGAACCAGTGAATCCAGCTGATGTGCCAGTGACCGCAGCTGGGGCATTGAAATCTTATAAGCTAGCAGCTAAAGCCATCTCAAAATTGCAGTCCTTGCCAAGTGGGAATATCTCTCTTTTATGTGAGGTATTGGTTAAGGAGGTTAGCGATTTGACAGGTTATGATCGAGTAATGGTGTATAAATTCCATGATGATGAGCATGGAGAAGTTGTAGCTGAGTGCTGCCGACCGGACTTAGAACCATATCTGGGCTTGCACTACCCAGCTACTGATATACCTCAAGCTTCAAGGTTCCTCTTTTTGAAGAATAAAGTCAGGATGATATGTGACTGTTTGGCACCTCCAGTTAAAGTGCTTCAAGACAGAAGATTGACTCAGCCATTAAGTCTATGTGGGTCTGCATTGAGGGCTCCTCATGGTTGTCATGCTCGGTACATGATGAATATGGGTTCTATTGCATCTCTTGTGATGTCTATTACAATCAATGAGAATGATAGTGAATCAGAGAATGATCAAGAAAAGGAAAGAAAGTTGTGGGGTTTAGTAGTTTGCCATCACACAAGCCCTAGGTTTGTTCCATTTCCTTTGAGATATGCTTGTGAATTCTTGATTCAAGTCTTTGGTATACAGATTAACAAAGAAGTGGAGTTGCAAACTCAGTTGAAGGAAAAACACATATTGCGAATTCAAACAGTTCTTTGTGATATGCTGCTAAGAGACGCTCCAGTAGGAATTGCTACTCAGTCTCCCAATATTATGGATCTTGTTAAGTGTGACGGTGCTGCCTTATATTACAGGAAGAAGTTTTGGTTACTTGGAGTCACCCCCACAGAGGCACAAATTAGAGATATAGCTGAATGGCTTCTCAAAGACCATGGTGGAAGCACTGGTTTAAGTACCGATAGCCTTATTGAAGCTGGTTTCTATGGTGCTTCTGCCCTTGGTGACGAGGTTTGTGGAATGGCTGCTGTTAGGATTACGTCTAAGGACTTCCTTTTCTGGTTTCGGTCACATATGGCTAAAGAAATCAGATGGGGTGGTGCAAAACATGATCCTGGCGACCAGGATGATGGAAGAAAGATGCATCCAAGATCATCATTCAAGGCTTTCCTGGAAGTGGTGAAGCGGCGTAGTCAACCTTGGGAAGATGTGGAAATGGATGCCATCCACTCACTGCAATTAATATTACGAGGTTCTTTACAGGATGATATTGAAGAAGAATGCAAAGTCATTACAAATGTCCCATCAGTTGATGAGAAGACACAACACATGGATGAATTGCGTGTCATCACAAATGAGATGGTTCGCCTAATTGAGACAGCTGCAGTGCCCATCTTGGCTGTAGATGTCTTGGGCAAGATCAATGGTTGGAACTCCAAAGCTACTGAGCTTACAGGATTGGCTATCCAGCAAGCCATTGGCATGCCCTTTGTTGATTGTCTGGTGCATGATTCTGTTAAGGTGGCAAAGAAAATGCTTTCCTTGGCCATTAAAGGTATTGAAGAAAAGAACGTTGAAATCAAACTCAAAACATTTGGAATTCCAGGAAACAGTGGTCCAGTTATCTTAGAAGTTAACTCATGCTGTAGCCGAGACCTAAACGATAATGTCGTAGGAGTTTGCTTTATAGGGCAGGATGTTACTAAACAAAAACTGTTAATGAACAAATACACCCAAATCCAAGGCGATTACACGGGGATTATGCGAAACCCATCTGCACTTATTCCTCCAATTTTTATGACTGATGATGATGGCCGGTGCTTGGAATGGAATGATGCAATGGAAAAATTATCTGGTTTTAGAAGGGAAGAGATGACAAATAGGATGCTTCTTGGGGAGGTTTTCACACTTGAAAATTTTGGCTGCCGTGTGAAAGATCAGACATTGACCAAACTTAGGATACTACTGCATAGAGTAATTTCAGGCCAGGATGCAGAGAAATTTTTGTTTAGGTTCTGTGATCGTGAAGGAAATCATGTTGAGACATTGCTTACTGCAAGCAAAAGGACTGATGCAGAGGGTAATATCACTGGAGTTTTCTTCTTCTTGCACGCGGCTAGTCCAGAACTTCAATATGCTTTGGAGATGCAGCGGATATCAGAACAAGCTACAGCTGATAATCTTCATAAATTGGCATATCTACGTCAAGAAATTCGAAAACCACTTGGTGGGATTACATTTATGCAGAATCTGATGGGTTCATCTGACTTAAGCAGAGAGCAAAAGAGGCTACTTAAATTGAACACTTTGAGTCGGGAACAATTACACAAGATTGTAGATGATAATGATATCCAGAGTATTGAGGAATGTTACATGGAAACAAACTGTAGTGAATTCAATCTTGGAGATGTTCTTGACGTTGTAACGAATCAAATCATGATTTTGAGCCTAGAGCGCGAGGTGAAGATCATTTGTGAATCACCTTCTGAAGTGTCATCTCTGCACTTGTATGGAGATAACACGAGGCTACAGCAGGTGCTCTCTGAGTTCTTGACTAACACACTTCTCTTCACTTGCAAAGGATCATCCGTCGTCTTCAAAACAGCTCCAAGGAAGGAGCGAATTGGGAAGGGAATCCACGTTGTTCATCTTGAATTGAGGATCACCCATCCCGCTCCAGGAATTCCTGCGCACTTGATCCGAGAGATGTTCGATGACAACAATGATAGCTCAAAGGAAGGTCTTGGCCTATACATCAGCCAGAAGCTTGTGAAGATCATGAATGGCACTGTACAGTATGTTCGAGAGGCTGAAACCTCGTCATTCATTGTCCTCATAGAATTCCCCTTGGTAGAACATATGACTTGA 3357 42.3 MSSTSTNKAVCSKTSCERSKHGAHVVAQTPIDAKLHVDFEGSERFFDYSASVDLNASSSTSNVHASTVQSYLQNIQRGSLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGSDVRTLFRSPGAAALQKAADFKEVNLLNPILVHCKTSGKPFYAILHRVDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKAISKLQSLPSGNISLLCEVLVKEVSDLTGYDRVMVYKFHDDEHGEVVAECCRPDLEPYLGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVLQDRRLTQPLSLCGSALRAPHGCHARYMMNMGSIASLVMSITINENDSESENDQEKERKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQTQLKEKHILRIQTVLCDMLLRDAPVGIATQSPNIMDLVKCDGAALYYRKKFWLLGVTPTEAQIRDIAEWLLKDHGGSTGLSTDSLIEAGFYGASALGDEVCGMAAVRITSKDFLFWFRSHMAKEIRWGGAKHDPGDQDDGRKMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSLQLILRGSLQDDIEEECKVITNVPSVDEKTQHMDELRVITNEMVRLIETAAVPILAVDVLGKINGWNSKATELTGLAIQQAIGMPFVDCLVHDSVKVAKKMLSLAIKGIEEKNVEIKLKTFGIPGNSGPVILEVNSCCSRDLNDNVVGVCFIGQDVTKQKLLMNKYTQIQGDYTGIMRNPSALIPPIFMTDDDGRCLEWNDAMEKLSGFRREEMTNRMLLGEVFTLENFGCRVKDQTLTKLRILLHRVISGQDAEKFLFRFCDREGNHVETLLTASKRTDAEGNITGVFFFLHAASPELQYALEMQRISEQATADNLHKLAYLRQEIRKPLGGITFMQNLMGSSDLSREQKRLLKLNTLSREQLHKIVDDNDIQSIEECYMETNCSEFNLGDVLDVVTNQIMILSLEREVKIICESPSEVSSLHLYGDNTRLQQVLSEFLTNTLLFTCKGSSVVFKTAPRKERIGKGIHVVHLELRITHPAPGIPAHLIREMFDDNNDSSKEGLGLYISQKLVKIMNGTVQYVREAETSSFIVLIEFPLVEHMT 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4806130 4812573 - Maker00006105 Lcy4g0391 629917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0391 1118 CDD PAS 624 730 IPR000014 -
Lcy4g0391 1118 Gene3D - 200 559 IPR029016 -
Lcy4g0391 1118 ProSiteProfiles Histidine kinase domain profile. 896 1115 IPR005467 -
Lcy4g0391 1118 ProSiteProfiles PAS repeat profile. 746 798 IPR000014 -
Lcy4g0391 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 617 726 IPR035965 -
Lcy4g0391 1118 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 948 1112 IPR036890 -
Lcy4g0391 1118 SMART HKATPase_4 1001 1115 IPR003594 -
Lcy4g0391 1118 FunFam Phytochrome 954 1113 - -
Lcy4g0391 1118 CDD PAS 757 867 IPR000014 -
Lcy4g0391 1118 Pfam PAS fold 71 186 IPR013654 GO:0006355(InterPro)
Lcy4g0391 1118 ProSiteProfiles PAS repeat profile. 613 683 IPR000014 -
Lcy4g0391 1118 SUPERFAMILY GAF domain-like 199 395 - -
Lcy4g0391 1118 SUPERFAMILY GAF domain-like 406 585 - -
Lcy4g0391 1118 Pfam PAS fold 756 867 IPR013767 GO:0006355(InterPro)
Lcy4g0391 1118 Pfam PAS fold 616 730 IPR013767 GO:0006355(InterPro)
Lcy4g0391 1118 CDD HATPase_Phy-like 1000 1111 IPR044767 -
Lcy4g0391 1118 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1001 1113 IPR003594 -
Lcy4g0391 1118 Gene3D - 933 1107 IPR036890 -
Lcy4g0391 1118 PRINTS Phytochrome signature 635 650 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy4g0391 1118 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy4g0391 1118 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy4g0391 1118 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy4g0391 1118 PRINTS Phytochrome signature 616 632 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy4g0391 1118 PRINTS Phytochrome signature 728 748 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy4g0391 1118 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy4g0391 1118 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy4g0391 1118 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy4g0391 1118 PRINTS Phytochrome signature 708 725 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy4g0391 1118 Gene3D PAS domain 600 744 - -
Lcy4g0391 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 188 IPR035965 -
Lcy4g0391 1118 Gene3D - 403 576 IPR043150 -
Lcy4g0391 1118 Gene3D PAS domain 759 870 - -
Lcy4g0391 1118 Pfam Phytochrome region 411 585 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy4g0391 1118 PIRSF Phytochrome_conventional 2 1118 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Lcy4g0391 1118 Gene3D PAS domain 74 322 - -
Lcy4g0391 1118 FunFam Phytochrome 609 740 - -
Lcy4g0391 1118 Pfam GAF domain 222 397 IPR003018 GO:0005515(InterPro)
Lcy4g0391 1118 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Lcy4g0391 1118 FunFam Phytochrome 403 534 - -
Lcy4g0391 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 760 864 IPR035965 -
Lcy4g0391 1118 NCBIfam PAS domain S-box protein 620 735 IPR000014 -
Lcy4g0391 1118 NCBIfam PAS domain S-box protein 760 867 IPR000014 -
Lcy4g0391 1118 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Lcy4g0391 1118 SMART gaf_1 219 408 IPR003018 GO:0005515(InterPro)
Lcy4g0391 1118 SMART pas_2 745 814 IPR000014 -
Lcy4g0391 1118 SMART pas_2 615 681 IPR000014 -
Lcy4g0391 1118 PANTHER OS08G0260000 PROTEIN 1 992 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0391 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2288 Lcy-Chr13:41793103 Lcy4g0391 Lcy-Chr4:4806130 0 dispersed
Lcy13g2291 Lcy-Chr13:41827690 Lcy4g0391 Lcy-Chr4:4806130 0 dispersed
Lcy4g0391 Lcy-Chr4:4806130 Lcy5g1781 Lcy-Chr5:40495604 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy6g2314 . 5 1163 Histidine Kinase Gene Family AT2G17820 62.7 0.0e+00 1379.0
Lcy7g1375 . 28 1013 Histidine Kinase Gene Family AT2G01830 72.0 0.0e+00 1349.3
Lcy10g1594 . 23 1006 Histidine Kinase Gene Family AT2G01830 71.8 0.0e+00 1336.6
Lcy3g1254 . 125 1094 Histidine Kinase Gene Family AT2G01830 52.0 1.1e-272 937.2
Lcy8g1364 . 304 1260 Histidine Kinase Gene Family AT2G01830 51.0 6.2e-257 884.8
Lcy4g0365 . 18 831 Histidine Kinase Gene Family AT2G01830 53.9 3.0e-235 812.8
Lcy9g1919 . 92 1121 Histidine Kinase Gene Family AT5G10720 57.2 9.5e-294 1006.9
Lcy13g2291 . 1 1120 Histidine Kinase Gene Family AT1G09570 80.6 0.0e+00 1841.6
Lcy13g2288 . 1 1129 Histidine Kinase Gene Family AT1G09570 73.9 0.0e+00 1691.8
Lcy4g0391 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.6 0.0e+00 1227.6
Lcy11g1336 . 27 1120 Histidine Kinase Gene Family AT1G09570 54.7 0.0e+00 1203.7
Lcy11g1336 . 13 1061 Histidine Kinase Gene Family AT2G18790 79.0 0.0e+00 1675.6
Lcy5g1781 . 31 1051 Histidine Kinase Gene Family AT2G18790 61.3 0.0e+00 1261.9
Lcy13g2291 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.6 0.0e+00 1094.0
Lcy4g0391 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.4 1.1e-312 1070.1
Lcy13g2288 . 7 1064 Histidine Kinase Gene Family AT2G18790 51.4 8.0e-311 1063.9
Lcy4g0391 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.4 0.0e+00 1387.9
Lcy11g1336 . 21 1122 Histidine Kinase Gene Family AT5G35840 53.0 0.0e+00 1162.1
Lcy13g2291 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1120.9
Lcy11g1336 . 3 1122 Histidine Kinase Gene Family AT4G16250 76.2 0.0e+00 1721.1
Lcy5g1781 . 32 1113 Histidine Kinase Gene Family AT4G16250 59.2 0.0e+00 1300.4
Lcy13g2291 . 8 1115 Histidine Kinase Gene Family AT4G16250 52.7 0.0e+00 1139.8
Lcy4g0391 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.4 0.0e+00 1113.2
Lcy13g2288 . 8 1125 Histidine Kinase Gene Family AT4G16250 50.7 0.0e+00 1087.0
Lcy5g1781 . 15 1114 Histidine Kinase Gene Family AT4G18130 63.9 0.0e+00 1401.7
Lcy11g1336 . 3 1120 Histidine Kinase Gene Family AT4G18130 57.5 0.0e+00 1274.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005493 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 7 1 40