Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0391 ATGTCTTCAACTTCAACAAATAAGGCTGTGTGTTCTAAGACCAGCTGCGAGCGATCAAAACATGGGGCTCATGTAGTTGCACAGACCCCAATTGATGCAAAGCTTCATGTTGACTTTGAAGGATCTGAAAGGTTCTTTGATTACTCTGCGTCGGTTGATTTGAATGCCTCAAGTTCCACTAGCAATGTTCATGCCTCCACTGTACAGTCATACCTTCAGAACATTCAGAGAGGAAGTCTAGTTCAACCATTTGGTTGTATGATTGCTGTTGATGGGGAAAACTTGTCAGTCCTTGCATATAGTGAAAATGCCCCCGAAATGTTGGACTTGGCCCCACATGCTGTGCCTAACATCGAGCAGCAAGAAGCTCTAACTTTTGGATCAGATGTGCGAACACTTTTTCGATCCCCGGGAGCTGCCGCTTTACAGAAAGCAGCTGACTTTAAGGAAGTTAATCTTCTCAATCCTATACTGGTCCATTGCAAGACTTCAGGTAAACCATTTTATGCAATTTTGCATCGAGTAGACGTGGGATTAATTATAGATTTGGAACCAGTGAATCCAGCTGATGTGCCAGTGACCGCAGCTGGGGCATTGAAATCTTATAAGCTAGCAGCTAAAGCCATCTCAAAATTGCAGTCCTTGCCAAGTGGGAATATCTCTCTTTTATGTGAGGTATTGGTTAAGGAGGTTAGCGATTTGACAGGTTATGATCGAGTAATGGTGTATAAATTCCATGATGATGAGCATGGAGAAGTTGTAGCTGAGTGCTGCCGACCGGACTTAGAACCATATCTGGGCTTGCACTACCCAGCTACTGATATACCTCAAGCTTCAAGGTTCCTCTTTTTGAAGAATAAAGTCAGGATGATATGTGACTGTTTGGCACCTCCAGTTAAAGTGCTTCAAGACAGAAGATTGACTCAGCCATTAAGTCTATGTGGGTCTGCATTGAGGGCTCCTCATGGTTGTCATGCTCGGTACATGATGAATATGGGTTCTATTGCATCTCTTGTGATGTCTATTACAATCAATGAGAATGATAGTGAATCAGAGAATGATCAAGAAAAGGAAAGAAAGTTGTGGGGTTTAGTAGTTTGCCATCACACAAGCCCTAGGTTTGTTCCATTTCCTTTGAGATATGCTTGTGAATTCTTGATTCAAGTCTTTGGTATACAGATTAACAAAGAAGTGGAGTTGCAAACTCAGTTGAAGGAAAAACACATATTGCGAATTCAAACAGTTCTTTGTGATATGCTGCTAAGAGACGCTCCAGTAGGAATTGCTACTCAGTCTCCCAATATTATGGATCTTGTTAAGTGTGACGGTGCTGCCTTATATTACAGGAAGAAGTTTTGGTTACTTGGAGTCACCCCCACAGAGGCACAAATTAGAGATATAGCTGAATGGCTTCTCAAAGACCATGGTGGAAGCACTGGTTTAAGTACCGATAGCCTTATTGAAGCTGGTTTCTATGGTGCTTCTGCCCTTGGTGACGAGGTTTGTGGAATGGCTGCTGTTAGGATTACGTCTAAGGACTTCCTTTTCTGGTTTCGGTCACATATGGCTAAAGAAATCAGATGGGGTGGTGCAAAACATGATCCTGGCGACCAGGATGATGGAAGAAAGATGCATCCAAGATCATCATTCAAGGCTTTCCTGGAAGTGGTGAAGCGGCGTAGTCAACCTTGGGAAGATGTGGAAATGGATGCCATCCACTCACTGCAATTAATATTACGAGGTTCTTTACAGGATGATATTGAAGAAGAATGCAAAGTCATTACAAATGTCCCATCAGTTGATGAGAAGACACAACACATGGATGAATTGCGTGTCATCACAAATGAGATGGTTCGCCTAATTGAGACAGCTGCAGTGCCCATCTTGGCTGTAGATGTCTTGGGCAAGATCAATGGTTGGAACTCCAAAGCTACTGAGCTTACAGGATTGGCTATCCAGCAAGCCATTGGCATGCCCTTTGTTGATTGTCTGGTGCATGATTCTGTTAAGGTGGCAAAGAAAATGCTTTCCTTGGCCATTAAAGGTATTGAAGAAAAGAACGTTGAAATCAAACTCAAAACATTTGGAATTCCAGGAAACAGTGGTCCAGTTATCTTAGAAGTTAACTCATGCTGTAGCCGAGACCTAAACGATAATGTCGTAGGAGTTTGCTTTATAGGGCAGGATGTTACTAAACAAAAACTGTTAATGAACAAATACACCCAAATCCAAGGCGATTACACGGGGATTATGCGAAACCCATCTGCACTTATTCCTCCAATTTTTATGACTGATGATGATGGCCGGTGCTTGGAATGGAATGATGCAATGGAAAAATTATCTGGTTTTAGAAGGGAAGAGATGACAAATAGGATGCTTCTTGGGGAGGTTTTCACACTTGAAAATTTTGGCTGCCGTGTGAAAGATCAGACATTGACCAAACTTAGGATACTACTGCATAGAGTAATTTCAGGCCAGGATGCAGAGAAATTTTTGTTTAGGTTCTGTGATCGTGAAGGAAATCATGTTGAGACATTGCTTACTGCAAGCAAAAGGACTGATGCAGAGGGTAATATCACTGGAGTTTTCTTCTTCTTGCACGCGGCTAGTCCAGAACTTCAATATGCTTTGGAGATGCAGCGGATATCAGAACAAGCTACAGCTGATAATCTTCATAAATTGGCATATCTACGTCAAGAAATTCGAAAACCACTTGGTGGGATTACATTTATGCAGAATCTGATGGGTTCATCTGACTTAAGCAGAGAGCAAAAGAGGCTACTTAAATTGAACACTTTGAGTCGGGAACAATTACACAAGATTGTAGATGATAATGATATCCAGAGTATTGAGGAATGTTACATGGAAACAAACTGTAGTGAATTCAATCTTGGAGATGTTCTTGACGTTGTAACGAATCAAATCATGATTTTGAGCCTAGAGCGCGAGGTGAAGATCATTTGTGAATCACCTTCTGAAGTGTCATCTCTGCACTTGTATGGAGATAACACGAGGCTACAGCAGGTGCTCTCTGAGTTCTTGACTAACACACTTCTCTTCACTTGCAAAGGATCATCCGTCGTCTTCAAAACAGCTCCAAGGAAGGAGCGAATTGGGAAGGGAATCCACGTTGTTCATCTTGAATTGAGGATCACCCATCCCGCTCCAGGAATTCCTGCGCACTTGATCCGAGAGATGTTCGATGACAACAATGATAGCTCAAAGGAAGGTCTTGGCCTATACATCAGCCAGAAGCTTGTGAAGATCATGAATGGCACTGTACAGTATGTTCGAGAGGCTGAAACCTCGTCATTCATTGTCCTCATAGAATTCCCCTTGGTAGAACATATGACTTGA 3357 42.3 MSSTSTNKAVCSKTSCERSKHGAHVVAQTPIDAKLHVDFEGSERFFDYSASVDLNASSSTSNVHASTVQSYLQNIQRGSLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGSDVRTLFRSPGAAALQKAADFKEVNLLNPILVHCKTSGKPFYAILHRVDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKAISKLQSLPSGNISLLCEVLVKEVSDLTGYDRVMVYKFHDDEHGEVVAECCRPDLEPYLGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVLQDRRLTQPLSLCGSALRAPHGCHARYMMNMGSIASLVMSITINENDSESENDQEKERKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQTQLKEKHILRIQTVLCDMLLRDAPVGIATQSPNIMDLVKCDGAALYYRKKFWLLGVTPTEAQIRDIAEWLLKDHGGSTGLSTDSLIEAGFYGASALGDEVCGMAAVRITSKDFLFWFRSHMAKEIRWGGAKHDPGDQDDGRKMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSLQLILRGSLQDDIEEECKVITNVPSVDEKTQHMDELRVITNEMVRLIETAAVPILAVDVLGKINGWNSKATELTGLAIQQAIGMPFVDCLVHDSVKVAKKMLSLAIKGIEEKNVEIKLKTFGIPGNSGPVILEVNSCCSRDLNDNVVGVCFIGQDVTKQKLLMNKYTQIQGDYTGIMRNPSALIPPIFMTDDDGRCLEWNDAMEKLSGFRREEMTNRMLLGEVFTLENFGCRVKDQTLTKLRILLHRVISGQDAEKFLFRFCDREGNHVETLLTASKRTDAEGNITGVFFFLHAASPELQYALEMQRISEQATADNLHKLAYLRQEIRKPLGGITFMQNLMGSSDLSREQKRLLKLNTLSREQLHKIVDDNDIQSIEECYMETNCSEFNLGDVLDVVTNQIMILSLEREVKIICESPSEVSSLHLYGDNTRLQQVLSEFLTNTLLFTCKGSSVVFKTAPRKERIGKGIHVVHLELRITHPAPGIPAHLIREMFDDNNDSSKEGLGLYISQKLVKIMNGTVQYVREAETSSFIVLIEFPLVEHMT 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4806130 4812573 - Maker00006105 Lcy4g0391 629917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0391 1118 CDD PAS 624 730 IPR000014 -
Lcy4g0391 1118 Gene3D - 200 559 IPR029016 -
Lcy4g0391 1118 ProSiteProfiles Histidine kinase domain profile. 896 1115 IPR005467 -
Lcy4g0391 1118 ProSiteProfiles PAS repeat profile. 746 798 IPR000014 -
Lcy4g0391 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 617 726 IPR035965 -
Lcy4g0391 1118 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 948 1112 IPR036890 -
Lcy4g0391 1118 SMART HKATPase_4 1001 1115 IPR003594 -
Lcy4g0391 1118 FunFam Phytochrome 954 1113 - -
Lcy4g0391 1118 CDD PAS 757 867 IPR000014 -
Lcy4g0391 1118 Pfam PAS fold 71 186 IPR013654 GO:0006355(InterPro)
Lcy4g0391 1118 ProSiteProfiles PAS repeat profile. 613 683 IPR000014 -
Lcy4g0391 1118 SUPERFAMILY GAF domain-like 199 395 - -
Lcy4g0391 1118 SUPERFAMILY GAF domain-like 406 585 - -
Lcy4g0391 1118 Pfam PAS fold 756 867 IPR013767 GO:0006355(InterPro)
Lcy4g0391 1118 Pfam PAS fold 616 730 IPR013767 GO:0006355(InterPro)
Lcy4g0391 1118 CDD HATPase_Phy-like 1000 1111 IPR044767 -
Lcy4g0391 1118 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1001 1113 IPR003594 -
Lcy4g0391 1118 Gene3D - 933 1107 IPR036890 -
Lcy4g0391 1118 PRINTS Phytochrome signature 635 650 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy4g0391 1118 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy4g0391 1118 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy4g0391 1118 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy4g0391 1118 PRINTS Phytochrome signature 616 632 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy4g0391 1118 PRINTS Phytochrome signature 728 748 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy4g0391 1118 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy4g0391 1118 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy4g0391 1118 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy4g0391 1118 PRINTS Phytochrome signature 708 725 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy4g0391 1118 Gene3D PAS domain 600 744 - -
Lcy4g0391 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 188 IPR035965 -
Lcy4g0391 1118 Gene3D - 403 576 IPR043150 -
Lcy4g0391 1118 Gene3D PAS domain 759 870 - -
Lcy4g0391 1118 Pfam Phytochrome region 411 585 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy4g0391 1118 PIRSF Phytochrome_conventional 2 1118 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Lcy4g0391 1118 Gene3D PAS domain 74 322 - -
Lcy4g0391 1118 FunFam Phytochrome 609 740 - -
Lcy4g0391 1118 Pfam GAF domain 222 397 IPR003018 GO:0005515(InterPro)
Lcy4g0391 1118 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Lcy4g0391 1118 FunFam Phytochrome 403 534 - -
Lcy4g0391 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 760 864 IPR035965 -
Lcy4g0391 1118 NCBIfam PAS domain S-box protein 620 735 IPR000014 -
Lcy4g0391 1118 NCBIfam PAS domain S-box protein 760 867 IPR000014 -
Lcy4g0391 1118 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Lcy4g0391 1118 SMART gaf_1 219 408 IPR003018 GO:0005515(InterPro)
Lcy4g0391 1118 SMART pas_2 745 814 IPR000014 -
Lcy4g0391 1118 SMART pas_2 615 681 IPR000014 -
Lcy4g0391 1118 PANTHER OS08G0260000 PROTEIN 1 992 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2288 Lcy-Chr13:41793103 Lcy4g0391 Lcy-Chr4:4806130 0 dispersed
Lcy13g2291 Lcy-Chr13:41827690 Lcy4g0391 Lcy-Chr4:4806130 0 dispersed
Lcy4g0391 Lcy-Chr4:4806130 Lcy5g1781 Lcy-Chr5:40495604 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0391 - - - 0.0