Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0405 ATGGGTTACATATGTGACTTTTGTGGTCATCAAAGGTCGATTGTTTACTGCCGATCCGATGCTGCAGCTTTGTGCTTATCTTGTGACCGTAATGTTCACTCTGCTAATGCCTTGTCAAGGCGCCACTCAAGGACGTTGTTATGTGATAGGTGCCATTCACAACCAGCATTTGTTAGATGTCCTGAAGAGAATATTTCTCTTTGTCAAAATTGTGATTATATTGGGCATAGCTCATCTGCCTCCATTTCGTCTCGAAAGAGGCAACCAATCAATTGTTACTCAGGCTGCCCGACCGCTGCAGAGCTCTCATCTATCTGGTCATTTGTTCTAGATCTCCCTTCTGTGAGTGACGCTTGTGAGCAAGAATTAGGATTGATGAGCATTGCTGAAAATAGTGCAGTAAATGCCTGGGGCCCTGATGATAAAGCTGGTCAAAATGTATCAGGTGTAGATGAAACCAATGAATTCTCAAGTGTGGATAAATCAATTTGGTATGGGTCCTCTTCAATGCCTCAATATTTATCCAAGCCTCACATTATGGACCAACCAATTACTATCGATGCAACTTCACCCGAGTTGCACTGTCCTGGACTCGACATTGAAGATGACCTCTACGAGAGTTTGAATATGGATGAAGATAGTTTGAATATTGAAAACTATGAAGAACTATTTGGTGTATCTCTCAGTTATTCTGAAGAATTGTTAGAGAATGGCGGCATTGATAGCTTGTTCAGGATCAAAAACTTATCTGCTGCTAAATCCGGTTGCCCTGGTGCAGCTGCTGCAGAGGGGTCGTCCGTTGGTTTAGCTAATAATACGATGCGGCCGGCAAGCAGTAATGCAGCATCTGCAGATTCCATGATGAGTGCAAAGACTGAACCGATTCTTTGTTATAACAATAAGCAAGAGCACTCCAGCCTATCGTTTTCTGGCATGACTGGAGAGAGTAGCGCCGGAGAACATCAAGACTGTGGAGCTTCATCAATGCTTCTAATGGGGGAGCCTCCATGGTGTTCTATGACCACTGAGGGTTCCTTCCAGTCATCTAATCGTAGCGATGCTGTAATGCGCTATAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTATGCCTCTCGCAAGGTGAGGGCCGATACTAGAAGGCGTGTCAAGGGGCGCTTTGTTAAAGCTGGAGAAGCTTATGACTATGATCCACTGAATCAAACCAGAAGCTACTGA 1227 44.17 MGYICDFCGHQRSIVYCRSDAAALCLSCDRNVHSANALSRRHSRTLLCDRCHSQPAFVRCPEENISLCQNCDYIGHSSSASISSRKRQPINCYSGCPTAAELSSIWSFVLDLPSVSDACEQELGLMSIAENSAVNAWGPDDKAGQNVSGVDETNEFSSVDKSIWYGSSSMPQYLSKPHIMDQPITIDATSPELHCPGLDIEDDLYESLNMDEDSLNIENYEELFGVSLSYSEELLENGGIDSLFRIKNLSAAKSGCPGAAAAEGSSVGLANNTMRPASSNAASADSMMSAKTEPILCYNNKQEHSSLSFSGMTGESSAGEHQDCGASSMLLMGEPPWCSMTTEGSFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPLNQTRSY 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4954323 4959863 - Maker00006335 Lcy4g0405 629931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0405 408 ProSiteProfiles CCT domain profile. 351 393 IPR010402 GO:0005515(InterPro)
Lcy4g0405 408 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Lcy4g0405 408 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Lcy4g0405 408 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 398 - -
Lcy4g0405 408 Pfam CCT motif 351 393 IPR010402 GO:0005515(InterPro)
Lcy4g0405 408 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270(InterPro)
Lcy4g0405 408 CDD Bbox1_BBX-like 4 47 IPR049808 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0405 Lcy-Chr4:4954323 Lcy7g0505 Lcy-Chr7:4482932 1.29E-13 dispersed
Lcy11g1068 Lcy-Chr11:32188225 Lcy4g0405 Lcy-Chr4:4954323 6.24E-21 transposed
Lcy8g1457 Lcy-Chr8:41238744 Lcy4g0405 Lcy-Chr4:4954323 6.62E-59 transposed
Lcy4g0405 Lcy-Chr4:4954323 Lcy8g1342 Lcy-Chr8:40181760 4.03E-158 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19935 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0405 - - - 0.0