Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0405 ATGGGTTACATATGTGACTTTTGTGGTCATCAAAGGTCGATTGTTTACTGCCGATCCGATGCTGCAGCTTTGTGCTTATCTTGTGACCGTAATGTTCACTCTGCTAATGCCTTGTCAAGGCGCCACTCAAGGACGTTGTTATGTGATAGGTGCCATTCACAACCAGCATTTGTTAGATGTCCTGAAGAGAATATTTCTCTTTGTCAAAATTGTGATTATATTGGGCATAGCTCATCTGCCTCCATTTCGTCTCGAAAGAGGCAACCAATCAATTGTTACTCAGGCTGCCCGACCGCTGCAGAGCTCTCATCTATCTGGTCATTTGTTCTAGATCTCCCTTCTGTGAGTGACGCTTGTGAGCAAGAATTAGGATTGATGAGCATTGCTGAAAATAGTGCAGTAAATGCCTGGGGCCCTGATGATAAAGCTGGTCAAAATGTATCAGGTGTAGATGAAACCAATGAATTCTCAAGTGTGGATAAATCAATTTGGTATGGGTCCTCTTCAATGCCTCAATATTTATCCAAGCCTCACATTATGGACCAACCAATTACTATCGATGCAACTTCACCCGAGTTGCACTGTCCTGGACTCGACATTGAAGATGACCTCTACGAGAGTTTGAATATGGATGAAGATAGTTTGAATATTGAAAACTATGAAGAACTATTTGGTGTATCTCTCAGTTATTCTGAAGAATTGTTAGAGAATGGCGGCATTGATAGCTTGTTCAGGATCAAAAACTTATCTGCTGCTAAATCCGGTTGCCCTGGTGCAGCTGCTGCAGAGGGGTCGTCCGTTGGTTTAGCTAATAATACGATGCGGCCGGCAAGCAGTAATGCAGCATCTGCAGATTCCATGATGAGTGCAAAGACTGAACCGATTCTTTGTTATAACAATAAGCAAGAGCACTCCAGCCTATCGTTTTCTGGCATGACTGGAGAGAGTAGCGCCGGAGAACATCAAGACTGTGGAGCTTCATCAATGCTTCTAATGGGGGAGCCTCCATGGTGTTCTATGACCACTGAGGGTTCCTTCCAGTCATCTAATCGTAGCGATGCTGTAATGCGCTATAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTATGCCTCTCGCAAGGTGAGGGCCGATACTAGAAGGCGTGTCAAGGGGCGCTTTGTTAAAGCTGGAGAAGCTTATGACTATGATCCACTGAATCAAACCAGAAGCTACTGA 1227 44.17 MGYICDFCGHQRSIVYCRSDAAALCLSCDRNVHSANALSRRHSRTLLCDRCHSQPAFVRCPEENISLCQNCDYIGHSSSASISSRKRQPINCYSGCPTAAELSSIWSFVLDLPSVSDACEQELGLMSIAENSAVNAWGPDDKAGQNVSGVDETNEFSSVDKSIWYGSSSMPQYLSKPHIMDQPITIDATSPELHCPGLDIEDDLYESLNMDEDSLNIENYEELFGVSLSYSEELLENGGIDSLFRIKNLSAAKSGCPGAAAAEGSSVGLANNTMRPASSNAASADSMMSAKTEPILCYNNKQEHSSLSFSGMTGESSAGEHQDCGASSMLLMGEPPWCSMTTEGSFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPLNQTRSY 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4954323 4959863 - Maker00006335 Lcy4g0405 629931

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0405 408 ProSiteProfiles CCT domain profile. 351 393 IPR010402 GO:0005515(InterPro)
Lcy4g0405 408 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Lcy4g0405 408 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Lcy4g0405 408 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 398 - -
Lcy4g0405 408 Pfam CCT motif 351 393 IPR010402 GO:0005515(InterPro)
Lcy4g0405 408 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270(InterPro)
Lcy4g0405 408 CDD Bbox1_BBX-like 4 47 IPR049808 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0405 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0405 Lcy-Chr4:4954323 Lcy7g0505 Lcy-Chr7:4482932 1.29E-13 dispersed
Lcy11g1068 Lcy-Chr11:32188225 Lcy4g0405 Lcy-Chr4:4954323 6.24E-21 transposed
Lcy8g1457 Lcy-Chr8:41238744 Lcy4g0405 Lcy-Chr4:4954323 6.62E-59 transposed
Lcy4g0405 Lcy-Chr4:4954323 Lcy8g1342 Lcy-Chr8:40181760 4.03E-158 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g1849 . 1 339 C2C2-CO-like Transcription Factor Family AT5G24930 60.8 3.5e-82 302.8
Lcy2g0242 . 20 376 C2C2-CO-like Transcription Factor Family AT5G24930 50.7 4.3e-56 216.1
Lcy2g0242 . 5 376 C2C2-CO-like Transcription Factor Family AT5G57660 51.2 9.0e-67 251.5
Lcy8g1342 . 1 421 C2C2-CO-like Transcription Factor Family AT3G07650 58.2 1.4e-99 360.5
Lcy4g0405 . 1 409 C2C2-CO-like Transcription Factor Family AT3G07650 55.5 2.3e-89 326.6
Lcy8g1342 . 1 421 C2C2-CO-like Transcription Factor Family AT5G48250 56.7 1.6e-93 340.5
Lcy4g0405 . 1 409 C2C2-CO-like Transcription Factor Family AT5G48250 55.8 1.8e-86 317.0
Lcy8g1342 . 1 421 C2C2-CO-like Transcription Factor Family AT5G48250 56.7 1.6e-93 340.5
Lcy4g0405 . 1 409 C2C2-CO-like Transcription Factor Family AT5G48250 55.8 1.8e-86 317.0
Lcy3g0981 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 58.3 9.0e-53 204.9
Lcy8g1159 . 1 204 C2C2-CO-like Transcription Factor Family AT1G75540 52.6 3.3e-47 186.4
Lcy1g0650 . 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 70.5 3.7e-50 195.3
Lcy6g0892 . 1 200 C2C2-CO-like Transcription Factor Family AT2G21320 51.7 3.6e-45 178.7
Lcy1g0650 . 1 164 C2C2-CO-like Transcription Factor Family AT4G38960 59.1 7.5e-49 191.0
Lcy8g1175 . 1 216 C2C2-CO-like Transcription Factor Family AT4G38960 50.5 4.1e-47 185.3
Lcy6g0892 . 1 199 C2C2-CO-like Transcription Factor Family AT4G38960 53.9 5.4e-47 184.9
Lcy3g0981 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.9 7.1e-55 211.5
Lcy13g1934 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 52.6 7.1e-47 184.9
Lcy8g1159 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 54.1 1.2e-43 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19935 None None None None Lcy TF