Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0408 ATGAAACAAAGAACAAATTCTTCTGCTTTTCTTCTTCTTCTTCTTCTCTCTTCTTCACTGTTCACTCTCACGTCCGCCATTAAAAGGTCCTATGTCGTCTACATGGGAGCTCACTCCCATGGCGGCCGAAAACCCGCCGATATCGTTGCCGATTCTCATCACGAACTCCTCCGACCGTTTCTCGAAAGTGGGGATGATTTTGCGGAAGATGTTATCTTTTACTCATATACAAGACACATCAACGGCTTCGCAGCAATGTTGGAGGACGAAGTAGCCGCTCAATTAGCCAAGCACCCGAAAGTGGTGTCGGTTTTTTTGAACAGAGGAAGAAAGTTACACACAACTAGATCATGGAAGTTCATGGGATTAGAAAACAACAATGGAGTTATCACTTCAGAATCAATATGGAAGAAGGCAAGATTTGGAGAAGGCACCATTATTGGAAACCTTGATACTGGGGTGTGGCCAGAATCAAAAAGCTTTAGTGATGATGATGATTTGGGACCAATTCCTTTCAGGTGGAAAGGAATCTGCCAAAACCAACATGATCCTTCTTTCCATTGCAATAGGAAGCTAATCGGAGCCAGATACTTCCACAAAGGCTATGAATCCGTCGTCGGCCGTCTCAATTCTTCGTTCAATTCGCCGAGGGACAACGAAGGCCATGGTTCTCACACCTTGTCGACGGCCGGCGGTAACTTCGTCGCCGGAGCTAGTGTATTTGGCTTGGGACAGGGCACCGCCAAGGGCGGATCGCCGAGGGCTCGGGTGGCCGCTTACAAGGTCTGCTGGCCTCCGGCGGCCGGAAATGAGTGCTTCGACGCCGATATCTTGGCGGCGTTTGATATGGCGATTCACGACGGCGTGGACGTGTTGTCGATTTCGCTTGGAGGAGATCCGAATCCGCTTTTTAACGACAGTGTTGCGATTGGCTCATTCCACGCCGTGAAGCATGGGATCGTGGTGATTTGCTCTGCCGGAAATTCTGGACCGACGGCCGGTTCGGTCACCAATATTGCGCCGTGGCAGATCACCGTTGGAGCGAGCACCATGGACAGGAAGTTTCCTAGTGGTGTCGTTCTTGGGAACAAGAAGTGGATTGAGGGTGAGAGCCTGTCCCCTGAAGCTTTGCCAAACAAGAAGTTCTATCCACTCATGAGTGCTGCAGATGTTAGATTGGCCAATGCATCAGTTAATGAAGCCCAATTGTGTAAAGCTGGTACACTCGATCCTATGAAGGCGAAGGGAAAGATCCTCGTCTGCCTTCGTGGCGATAATGCTAGAGTGGACAAGGGCGAGCAAGCATTGTTGGCTGGTGCTTTGGGCATGATTCTCGCCAATAGTGAGGCCAGTGGGAATGAAATCCTTGCTGACCCACATGTCCTTCCAGCCTCACATATCAACTACACCGATGGCGTCACAGTCTTTGAATACATCAATTCAACCAAGTTGCCTGTGGCTTATATCACACGAGCTACAACTCAATTAGGTATAAGGCCAGCTCCGTTTATGGCAGCATTTTCATCAGTGGGACCGAACACTGTTACTCCAGAGATCCTAAAGCCTGATGTTACAGCTCCTGGGGTGAGTGTTATAGCTGCTTATACTGAAGCAGAAGGACCAACGAATCAAGAATTTGATCATCGTCGGGTTCCTTTTAACTCAATATCTGGAACTTCCATGTCATGCCCTCATGTTTCTGGTATTGCTGGTCTTCTCAGAACTCTTTACCCTCATTGGAGTCCTGCAGCCATTAAATCTGCAATCATGACCACTGCAAGCACACTAGACAACAACTTCGAGCCGCTACTCAATGCTTCCTACTCCAAGGCCACACCATTCAACTATGGAGCAGGACACATTCACCCAAATGGTGCTACAGATCCTGGCTTGGTTTATGACATAGAGGTTAAAGAATATCTGTTATTTCTATGTGCATTAGGATATGATGAAGCTCAAATATCTCAATTCTCCGATGGTCCCTTCAATTGCTCAAAGCCTATAAGTCTAACAAATCTCAACTATCCTTCAATTACTGTCCCAAAGCTCTCTAGATCAATCACAATAACTCGAAGAGTAAAGAATGTCGGTTCTCCTGGAACCTACAAAGCCCGGATAAGAAAACCATCTGGGATATCGGTTTGGGTTAAGCCAAAGAAGTTGAAATTCACAAAGGTAGGTGAAGAGCAGAGCTTCAAAGTTCTCTTGAAAGTCAAGAAACAGAATGTAGCAAGGAACTATGTGTTTGGTGATTTAATATGGTCAGATGGTAAGCACCATGTAAGAAGCCCTATTGTGGTGAAGGCAGTCTAG 2313 47.04 MKQRTNSSAFLLLLLLSSSLFTLTSAIKRSYVVYMGAHSHGGRKPADIVADSHHELLRPFLESGDDFAEDVIFYSYTRHINGFAAMLEDEVAAQLAKHPKVVSVFLNRGRKLHTTRSWKFMGLENNNGVITSESIWKKARFGEGTIIGNLDTGVWPESKSFSDDDDLGPIPFRWKGICQNQHDPSFHCNRKLIGARYFHKGYESVVGRLNSSFNSPRDNEGHGSHTLSTAGGNFVAGASVFGLGQGTAKGGSPRARVAAYKVCWPPAAGNECFDADILAAFDMAIHDGVDVLSISLGGDPNPLFNDSVAIGSFHAVKHGIVVICSAGNSGPTAGSVTNIAPWQITVGASTMDRKFPSGVVLGNKKWIEGESLSPEALPNKKFYPLMSAADVRLANASVNEAQLCKAGTLDPMKAKGKILVCLRGDNARVDKGEQALLAGALGMILANSEASGNEILADPHVLPASHINYTDGVTVFEYINSTKLPVAYITRATTQLGIRPAPFMAAFSSVGPNTVTPEILKPDVTAPGVSVIAAYTEAEGPTNQEFDHRRVPFNSISGTSMSCPHVSGIAGLLRTLYPHWSPAAIKSAIMTTASTLDNNFEPLLNASYSKATPFNYGAGHIHPNGATDPGLVYDIEVKEYLLFLCALGYDEAQISQFSDGPFNCSKPISLTNLNYPSITVPKLSRSITITRRVKNVGSPGTYKARIRKPSGISVWVKPKKLKFTKVGEEQSFKVLLKVKKQNVARNYVFGDLIWSDGKHHVRSPIVVKAV 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4986760 4997506 + Maker00006338 Lcy4g0408 629934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0408 770 CDD Peptidases_S8_3 111 594 IPR034197 -
Lcy4g0408 770 Gene3D Peptidase S8/S53 domain 144 640 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy4g0408 770 Pfam Peptidase inhibitor I9 30 113 IPR010259 -
Lcy4g0408 770 ProSiteProfiles Serine proteases, subtilase domain profile. 117 627 - -
Lcy4g0408 770 ProSitePatterns Serine proteases, subtilase family, serine active site. 558 568 IPR023828 -
Lcy4g0408 770 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 18 113 IPR037045 -
Lcy4g0408 770 Gene3D - 352 496 - -
Lcy4g0408 770 PRINTS Subtilisin serine protease family (S8) signature 557 573 IPR015500 -
Lcy4g0408 770 PRINTS Subtilisin serine protease family (S8) signature 142 161 IPR015500 -
Lcy4g0408 770 PRINTS Subtilisin serine protease family (S8) signature 218 231 IPR015500 -
Lcy4g0408 770 FunFam Subtilisin-like protease SBT5.3 20 113 - -
Lcy4g0408 770 Pfam Subtilase family 142 605 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy4g0408 770 FunFam p69E protein-like 644 770 - -
Lcy4g0408 770 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 31 766 IPR045051 -
Lcy4g0408 770 SUPERFAMILY Subtilisin-like 112 631 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy4g0408 770 SUPERFAMILY PA domain 411 486 IPR046450 -
Lcy4g0408 770 Pfam PA domain 400 473 IPR003137 -
Lcy4g0408 770 Gene3D - 644 770 - -
Lcy4g0408 770 FunFam subtilisin-like protease SBT1.5 352 496 - -
Lcy4g0408 770 Pfam Fibronectin type-III domain 672 767 IPR041469 -
Lcy4g0408 770 CDD PA_subtilisin_like 359 489 - -
Lcy4g0408 770 FunFam Subtilisin-like protease SBT1.5 144 362 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0235 Lcy-Chr1:2117886 Lcy4g0408 Lcy-Chr4:4986760 1.21E-184 dispersed
Lcy4g0408 Lcy-Chr4:4986760 Lcy6g1881 Lcy-Chr6:39452459 7.03e-317 dispersed
Lcy4g0408 Lcy-Chr4:4986760 Lcy6g1880 Lcy-Chr6:39409989 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0408 - - - 0.0