Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0413 ATGTCTCCGACGAAGCAACCGGCCGGAAAAAATGGGTGTCGAATATTCTGGAAACCAATGAAGAAGAAGATGAGATTAAGCAATCTAGAACTTGTAGAATATGTAAAAAGAATGAAAAAGAACAAAAACCCAGCAAACAAAGAACCTGACAACTATAGGCCCTCGAAAGCTCCATGGCGTCTGGAATCTGCCAATGCCATATCGCAATTCTGCGGTCCTGTTTCACTTTCACGTGGGTTTCTCTTGTTCAGATATTTCTGTTCACTGATCGAAAAGAAGAACCGGACAAATTCTACCATATTAAGTCTGAAACTTTTTCTTCTTCTTCTGCCAACTTTGATTTTTCGAGTGTGTATTGCTGGTATATTGAGCAAAATGATGTTCAGCAATAAGAAAAGTTCACTGTTGTGCAAAATATTTCCATTGGAACTTCTTCCTTGCAGTACGTTTCGTATACATGCAAGAGAGAAAGATCAGAAAATGGATGAAAAGAGAGAAACCAAAGAGCCATCAAACTTTAATCTCTCATCTTCTGCTTGTCAAATCAGCCCTGCAGAGAAGAGGACACCAATTGAAGTCTTTCAAGTGCCTGCAAGTTCCGGAGATGTCCATTCCAAAGGCCAGAGTGATGCCACTCACGAGCAGGATGAGGCAAAATCATCCATCACTTCCTTTTGTCCTGCTGTCAGCAAGGAAGCATCCAGAAAGTGGATGGCATTTGAAAGTGAAAGTTTTGATATTACAAAGACATACACAAAGAACTTCAGTCGAAGCTTTGGGTCATCTTCTACTAAACTCTTGGAAACAAACATGACAAAGAGGACTGCAGAGGAGAAAAAAAATGATGGTTTATCATCGCTGCAACTGACTTATGTTATCTCAGATGCAACAAAACCAGATTGTCCTATTGTGTTTGCCAGCGATAGGTTCTTGGTTATGACTGGATATACATTGGAGGAGGTCATTGGAAGGAACTGCCGGTTTCTTCAAGGACCAGAGACAGATAAGAATGAAGTAGCCAAAATACGAGATGCAATCAGAAAGGGGAATAGCTACTGTGGCAAGCTCTTGAACTACAAGAAGAATGGTACTCCTTTCTGGAATCTTCTCACTATTGGGCCTATCAAAGATTCCCGTGGCAACATCATCAAATTTATGGGGTCCGTCTCTCTACTTGTTCCTTTCACTTGCAGAATGCAGGTTGAGATTGGCAAAAACGCAGAAGAAAAAGAGAAGACCATGAGGTCCATGTCCATTACAGAGGTCCAAGCTGAGAAGGCAATGAGGTCCATTGTGGAGGTCCAAGCTGTGAAGAGTCTAAGATCTTACGTGCAGTCAAAAAGGCATGATGCTGATAGAAAGCACGAAGAGCCAGAAATAACTGAAGTTGATTATGCTTTGCACAAGGCTTTAGATGATGAGAATATTAGCACATCTGATAACCAAAAGGATAAGTTGAATCTGATAAATGGTCTAAAGGATTCAAACACAGAATCAAGATTATCTGGTCTTGTTTCCTCAAAGGGGTTCAAAGAAAGGACTCCAGGCTCTGCAGTAGAACGTGAAGAAAAGACAGTTGTTGAGACATCAGTTTTGAAGCCTAAGGATGGTGATTGTGTTGCTAAAAGAGAAAGGGATGTACGTCAAGGAATTGAATTGGCAACCACATTGGAACGGATAGAGAGGATATTTTTTATCACTAACCCAAGACTTCCCGATAATCCTATTATATTTGCATCTGATAGATTTCTTGACTCCACAGAATACACGAGTGAAGAAGTTCTAGGGAGAAACTTTTGGTTTCTTAAGGGACCTGAAACAGATCAAGTAGTTGTCTCAAAGATTAAAGATGCAATTGAAGAGAAGAGAGAAATCACCATTCAAATAAACAACTATACAAAGAGTGGAAAAAACTTCTTGAATTTATTCCATTTGCAACCCATGTGTGATAAGAAGGGTGAGCTTCAATACTTCATTGGTGTGCAACTTCATGTAAAACCTTCCAGAGACCAACTTTTAGAACGAACGGAGCATGAAAGTACTAAGCTGGTCAAAGCTATAGCAGAAAATGTTGACAAGGCTGTCCGTGAACTTCCTGATGCCAACTTGAAACCAAAGAACTTGTGGGCAATCTACTGTCAGCCAGTCATACCAAGGCCTCACAAGAAGTATAATTCTTCCTGGATAGCCATACAAAAGATTACTGGTCATGGTGAAGAGATTGGACTCCATCATTTTAAGCCAATAAAACCACTGGGTTTTGGAGACATTGGCAGTGTTCATTTGGTAGAACTGAAAGGAACGGGTGAACTCTTTGCTATGAAGGCAATAGAGAAGTCGGTAATATTAAATCGTAACAAGGTTCACCGAGCATGCATGGAAAGGGAGATCATATCCCTTTTGGATCATCCTTTCATGCCAACACTATACTCTTCATTTCAGACTCCTACGCACATTTTTCTGATTATGGACTTCTGCCCTGGTGGAGAGTTATTTGCCTTTCTTGACAAGCAGCCAATGAAAATGTTCACAGAGGAAGCTGCTAGGTTCTATGCTGCAGAAGTTGTCATTGCTTTGGAATACCTTCACTGTTTAGGTATTATCTATAGGGACCTAAAACCTGAAAACATTCTACTCCAAAAGGATGGACATATCGTCCTCACTGATTTTGATTTATCGTTCAAGACATCTAATTTACAAACCATAGAATCTCCCCCATCAAAAAAGACTAAGAGATGTAGGCATAAATCATGGCCAATGTTTGTTGTTGAACCCGTCGTGGAACTAAATTCATTCATTGGAACGGAAGAGTACATTGCTCCGGAGATTATAACAGGAGCAGGCCACAGTAGCTCTATTGACTGGTGGACTCTTGGTGTTTTGCTGTATGAGATGCTCTATGGTCGCACTCCCTTCAAAGGCAAAGACAGGAAGAAAACATTTGCTAATATTTTGTTTAAGGACTTAACCTTCCCCTTTAGTATTCAGGTGAGTCTTGCAGCAAAGCAGCTGATTGATGCACTGCTACAGAGAGATCCTGCACGTCGTCTAGGATCAAGTACTGGTGCCGATGAAATCAAACGACACCCTTTTTTTCGTCAAATAAATTGGCCTAAAATTCGAACCATGACCCCACCATCATCAGAAGTAGCCCTTCAGTTAATTGAGAGAGATCCAAAAGCTAATGATTTGAAGTGGGAAGATGGATTGCTCAGTCATTCAATAGGCACTGATGTTTTCTGA 3243 40.64 MSPTKQPAGKNGCRIFWKPMKKKMRLSNLELVEYVKRMKKNKNPANKEPDNYRPSKAPWRLESANAISQFCGPVSLSRGFLLFRYFCSLIEKKNRTNSTILSLKLFLLLLPTLIFRVCIAGILSKMMFSNKKSSLLCKIFPLELLPCSTFRIHAREKDQKMDEKRETKEPSNFNLSSSACQISPAEKRTPIEVFQVPASSGDVHSKGQSDATHEQDEAKSSITSFCPAVSKEASRKWMAFESESFDITKTYTKNFSRSFGSSSTKLLETNMTKRTAEEKKNDGLSSLQLTYVISDATKPDCPIVFASDRFLVMTGYTLEEVIGRNCRFLQGPETDKNEVAKIRDAIRKGNSYCGKLLNYKKNGTPFWNLLTIGPIKDSRGNIIKFMGSVSLLVPFTCRMQVEIGKNAEEKEKTMRSMSITEVQAEKAMRSIVEVQAVKSLRSYVQSKRHDADRKHEEPEITEVDYALHKALDDENISTSDNQKDKLNLINGLKDSNTESRLSGLVSSKGFKERTPGSAVEREEKTVVETSVLKPKDGDCVAKRERDVRQGIELATTLERIERIFFITNPRLPDNPIIFASDRFLDSTEYTSEEVLGRNFWFLKGPETDQVVVSKIKDAIEEKREITIQINNYTKSGKNFLNLFHLQPMCDKKGELQYFIGVQLHVKPSRDQLLERTEHESTKLVKAIAENVDKAVRELPDANLKPKNLWAIYCQPVIPRPHKKYNSSWIAIQKITGHGEEIGLHHFKPIKPLGFGDIGSVHLVELKGTGELFAMKAIEKSVILNRNKVHRACMEREIISLLDHPFMPTLYSSFQTPTHIFLIMDFCPGGELFAFLDKQPMKMFTEEAARFYAAEVVIALEYLHCLGIIYRDLKPENILLQKDGHIVLTDFDLSFKTSNLQTIESPPSKKTKRCRHKSWPMFVVEPVVELNSFIGTEEYIAPEIITGAGHSSSIDWWTLGVLLYEMLYGRTPFKGKDRKKTFANILFKDLTFPFSIQVSLAAKQLIDALLQRDPARRLGSSTGADEIKRHPFFRQINWPKIRTMTPPSSEVALQLIERDPKANDLKWEDGLLSHSIGTDVF 1080
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5030181 5046138 + Maker00006202 Lcy4g0413 629939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0413 1080 FunFam Putative LOV domain-containing protein 830 1044 - -
Lcy4g0413 1080 PANTHER FLIPPASE KINASE 1-RELATED 635 1049 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lcy4g0413 1080 ProSiteProfiles Protein kinase domain profile. 746 1032 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0413 1080 CDD PAS 563 665 IPR000014 -
Lcy4g0413 1080 Gene3D PAS domain 538 698 - -
Lcy4g0413 1080 Gene3D Phosphorylase Kinase; domain 1 745 829 - -
Lcy4g0413 1080 ProSiteProfiles PAS repeat profile. 276 349 IPR000014 -
Lcy4g0413 1080 Gene3D Transferase(Phosphotransferase) domain 1 830 1046 - -
Lcy4g0413 1080 NCBIfam PAS domain S-box protein 303 389 IPR000014 -
Lcy4g0413 1080 NCBIfam PAS domain S-box protein 575 661 IPR000014 -
Lcy4g0413 1080 SMART pas_2 278 347 IPR000014 -
Lcy4g0413 1080 SMART pas_2 551 620 IPR000014 -
Lcy4g0413 1080 MobiDBLite consensus disorder prediction 156 177 - -
Lcy4g0413 1080 Coils Coil 615 635 - -
Lcy4g0413 1080 SMART serkin_6 746 1032 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0413 1080 Pfam Protein kinase domain 749 1032 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0413 1080 Pfam PAS domain 297 386 IPR000014 -
Lcy4g0413 1080 Pfam PAS domain 571 661 IPR000014 -
Lcy4g0413 1080 MobiDBLite consensus disorder prediction 156 170 - -
Lcy4g0413 1080 CDD STKc_phototropin_like 744 1046 - -
Lcy4g0413 1080 ProSitePatterns Serine/Threonine protein kinases active-site signature. 867 879 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g0413 1080 SUPERFAMILY PYP-like sensor domain (PAS domain) 564 662 IPR035965 -
Lcy4g0413 1080 SUPERFAMILY PYP-like sensor domain (PAS domain) 297 388 IPR035965 -
Lcy4g0413 1080 SUPERFAMILY Protein kinase-like (PK-like) 723 1053 IPR011009 -
Lcy4g0413 1080 SMART pac_2 626 668 IPR001610 -
Lcy4g0413 1080 SMART pac_2 353 395 IPR001610 -
Lcy4g0413 1080 CDD PAS 303 389 IPR000014 -
Lcy4g0413 1080 MobiDBLite consensus disorder prediction 199 220 - -
Lcy4g0413 1080 ProSiteProfiles PAS repeat profile. 549 622 IPR000014 -
Lcy4g0413 1080 Gene3D PAS domain 291 468 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0413 Lcy-Chr4:5030181 Lcy8g1981 Lcy-Chr8:46074575 4.63E-101 dispersed
Lcy2g0614 Lcy-Chr2:5249331 Lcy4g0413 Lcy-Chr4:5030181 4.58E-60 transposed
Lcy5g0028 Lcy-Chr5:472393 Lcy4g0413 Lcy-Chr4:5030181 1.38E-57 transposed
Lcy7g0605 Lcy-Chr7:5456184 Lcy4g0413 Lcy-Chr4:5030181 6.99E-47 transposed
Lcy8g1859 Lcy-Chr8:44891114 Lcy4g0413 Lcy-Chr4:5030181 3.26E-276 transposed
Lcy8g2106 Lcy-Chr8:47250171 Lcy4g0413 Lcy-Chr4:5030181 4.07E-69 transposed
Lcy4g0413 Lcy-Chr4:5030181 Lcy8g1325 Lcy-Chr8:39988621 2.33E-208 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65843 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0413 K20715 - csv:101213364 1459.89