Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0421 ATGTCCGATTTGAACTCCGCCGTCCACGGCGGCGCTTCTCGCTACGCCGATCAATTTCTCGGATCCGAGCTCCAACTTCAATCCGATCCCAACAATTCGCCGGAAAGTCACCGGCAGAAGCTCAATCCTCCCGACTCAACCACCAACACTAGCGGCGGTTCGTCGTCCACGCGCCGCCCTCGCGGCCGCCCCGCCGGCTCCAAGAACAAGCCGAAGCCGCCGGTGATCATTACACGTGACAGCCCCAACGCTCTGAGATCGCACGTGCTGGAGGTCTCCACCGGCTCCGATGTGGTTGAAACAATCGCGAGTTACGCCACGCGCCGCCGCCACGGCGTTTGCATTCTCGCTGGCACTGGCGTCGTCACTAACGTCAACTTGCGCCAGCCGGCGGCGCCGTCAGGGACTGTTATGACGCTTCATGGCACATTTGAGATTGTGTCTCTGACCGGTACGTCATTGCCGCCGCCGGCGCCACCAGGTGCCGGCGGGCTGACGATATATTTGTCCGGCGGGCAAGGGCAAGTCGTCGGAGGAAGTGTTGTCGGGCCATTGACGGCTTCGGGTCCGGTTGTTTTGATGGTGGCGTCGTTCACCAATGCGGTGTATGATCGGCTGCCGCTAGACGAGGCGGAGCCACCGATTCAAGCCCAGAGATCCACGTCGCCGTGCTCAGATGTTACAGTTATAGGTGGAGGTGGTCAGCTCGGAGGCGTCGGGAACTTCGACTTTGCCGGGGACGGTTACGGAGCTGACGAGGACATCTGGGCAGAAATAGGACTAGGAGACCGACCCAGAGGAAGAACTGACCAAAGGGCCGGGCCAACTTGGTCTGACCCGCGGGCCGAGCTCGATCGCCTCCTTTCTGTCCCAGATGCCTCTGGCCGTCCCGGTTCCGCCTGGCCACGTCTTCCCCCCTCTCAAACAAATTTACCGTTGGTGGCACGTGAAGGTCAGGTAATTCTGGACCAACCCGGAATCGAAGGAGGTTGGACCAAGGCCGAAGGGGTTGGGCCAAGCTCGGCCCGGAGTCTTCCAACGCCTGAAAACCCTAATATGCTAACCCAGGCATCGGAGGAGGTGTGGCAAGCACCACACCGGTGTGCAGTTTTTGTTGGTTTTGCAGGTCACGTCTTCCCCAGCTTCTACAAATTTACTGTTCGTGTCACGTGA 1173 60.02 MSDLNSAVHGGASRYADQFLGSELQLQSDPNNSPESHRQKLNPPDSTTNTSGGSSSTRRPRGRPAGSKNKPKPPVIITRDSPNALRSHVLEVSTGSDVVETIASYATRRRHGVCILAGTGVVTNVNLRQPAAPSGTVMTLHGTFEIVSLTGTSLPPPAPPGAGGLTIYLSGGQGQVVGGSVVGPLTASGPVVLMVASFTNAVYDRLPLDEAEPPIQAQRSTSPCSDVTVIGGGGQLGGVGNFDFAGDGYGADEDIWAEIGLGDRPRGRTDQRAGPTWSDPRAELDRLLSVPDASGRPGSAWPRLPPSQTNLPLVAREGQVILDQPGIEGGWTKAEGVGPSSARSLPTPENPNMLTQASEEVWQAPHRCAVFVGFAGHVFPSFYKFTVRVT 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5099054 5103244 - Maker00006191 Lcy4g0421 629947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0421 390 CDD DUF296 86 152 IPR005175 -
Lcy4g0421 390 ProSiteProfiles PPC domain profile profile. 82 219 IPR005175 -
Lcy4g0421 390 Pfam Plants and Prokaryotes Conserved (PCC) domain 86 200 IPR005175 -
Lcy4g0421 390 SUPERFAMILY AF0104/ALDC/Ptd012-like 83 212 - -
Lcy4g0421 390 Gene3D - 85 216 - -
Lcy4g0421 390 MobiDBLite consensus disorder prediction 20 62 - -
Lcy4g0421 390 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 42 218 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Lcy4g0421 390 MobiDBLite consensus disorder prediction 18 82 - -
Lcy4g0421 390 MobiDBLite consensus disorder prediction 261 281 - -
Lcy4g0421 390 FunFam AT-hook motif nuclear-localized protein 85 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0421 Lcy-Chr4:5099054 Lcy4g2010 Lcy-Chr4:46595440 4.41E-72 dispersed
Lcy2g0429 Lcy-Chr2:3586180 Lcy4g0421 Lcy-Chr4:5099054 1.53E-12 transposed
Lcy4g0421 Lcy-Chr4:5099054 Lcy9g2360 Lcy-Chr9:47863649 2.20E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0421 - - - 0.0