Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0428 ATGGCTGCCTTTGTAGCTATCATAGTCTACTTCGTTCTTTGGCCAACGCCCGGCATTTTTGCGGCTAAGGATGAAGAGTGGAAATCTGCAACTGCAACATACTCCAAAGAAACAGATGGGTCTATAATTACAGAAGGTGCTTGTGGTTATGGAGATCTGCATAAGATTAGCTATGGGAAATATAGTGCTGGACTGAGTAGCATGTTGTTTAGTAGAGGGAGTACCTGTGGAGCTTGCTATGAGCTTAGATGTGTTGACCACATCTTGTGGTGCTTGCAAGGAAGCCCAACCGTCATTCTAACCGCCACCGACTTCTGCCCTCCCAATTATGGCTTATCTTCTGATTATGGTGGGTGGTGCAATTTTCCCAAAGAACACTTTGAGATGTCAGAGGCAGCATTTGCTGAAATAGCAGAGAAAAAAGCAGATATTGTACCAGTTCAATATAGGAGGGTGAGGTGTGACAGAAGTGGTGGATTGAGGTTCACAGTCAGTGGGAATTCTCGCTTCTTTCAAGTTCTGATTACTAATGTTGGAATGGATGGTGAACTATTGGCAGTGAAAGTGAAGGGATCAAGAACAGGGTGGATACCACTGGCGAGGAACTGGGGACAAAACTGGCAAAGCAATGTCAATCTTCTTGGGCAACCTCTCTCTTTCGAAGTTACCTCTAGCAGTGGAAGAGCACTTACTTCCTATGGTGTTGCACCTGGAAACTGGCAGTTCGGGCAGACATTTGAAGGGAAACAATTTTGA 756 45.11 MAAFVAIIVYFVLWPTPGIFAAKDEEWKSATATYSKETDGSIITEGACGYGDLHKISYGKYSAGLSSMLFSRGSTCGACYELRCVDHILWCLQGSPTVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFAEIAEKKADIVPVQYRRVRCDRSGGLRFTVSGNSRFFQVLITNVGMDGELLAVKVKGSRTGWIPLARNWGQNWQSNVNLLGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF 251
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 5273355 5277653 - Maker00006224 Lcy4g0428 629954
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0428 251 Gene3D - 15 155 IPR036908 -
Lcy4g0428 251 Pfam Expansin C-terminal domain 161 237 IPR007117 -
Lcy4g0428 251 PANTHER EXPANSIN-A15 14 251 IPR002963 GO:0009664(InterPro)
Lcy4g0428 251 Pfam Lytic transglycolase 63 149 IPR009009 -
Lcy4g0428 251 Gene3D - 159 251 IPR036749 -
Lcy4g0428 251 PRINTS Expansin signature 134 147 IPR002963 GO:0009664(InterPro)
Lcy4g0428 251 PRINTS Expansin signature 98 108 IPR002963 GO:0009664(InterPro)
Lcy4g0428 251 PRINTS Expansin signature 117 134 IPR002963 GO:0009664(InterPro)
Lcy4g0428 251 PRINTS Expansin signature 234 250 IPR002963 GO:0009664(InterPro)
Lcy4g0428 251 PRINTS Expansin signature 158 170 IPR002963 GO:0009664(InterPro)
Lcy4g0428 251 PRINTS Expansin signature 205 226 IPR002963 GO:0009664(InterPro)
Lcy4g0428 251 PRINTS Expansin signature 57 71 IPR002963 GO:0009664(InterPro)
Lcy4g0428 251 PRINTS Expansin signature 170 191 IPR002963 GO:0009664(InterPro)
Lcy4g0428 251 PRINTS Expansin signature 84 95 IPR002963 GO:0009664(InterPro)
Lcy4g0428 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Lcy4g0428 251 SUPERFAMILY Barwin-like endoglucanases 26 177 IPR036908 -
Lcy4g0428 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 159 IPR007112 -
Lcy4g0428 251 SMART dpbb_1 62 149 IPR007112 -
Lcy4g0428 251 CDD DPBB_EXPA_N 26 154 - -
Lcy4g0428 251 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576(InterPro)
Lcy4g0428 251 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576(InterPro)
Lcy4g0428 251 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576(InterPro)
Lcy4g0428 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
Lcy4g0428 251 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576(InterPro)
Lcy4g0428 251 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576(InterPro)
Lcy4g0428 251 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0428 Lcy-Chr4:5273355 Lcy7g1071 Lcy-Chr7:11465885 2.88E-91 dispersed
Lcy4g0428 Lcy-Chr4:5273355 Lcy8g1801 Lcy-Chr8:44424220 3.15E-92 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0428 - - - 0.0