Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0439 ATGAGAGAGGTTGAAGGGAGAAGGCTTTGCCAGGAGTTTTCAGCTGGATATTATGGTCTTTGTACTGTTGGAGGAATGCTCAGTGCTGGAACAACCCATCTCGCTATTACACCTTTTGATGTCTTGAAGGTCAATATGCAGGTAAATCCAATCAAGTACAATGGCATTTCTTCTGGTTTTTCTATTCTTTGGAGGGAACAAGGCCCTTCATCCCTTTGGAGAGGTTGGTCAGGCAAGTTATTCGGATATGGTGTTCAAGGCGGGTTCAAATTCGGTCTCTATGAGTACTTTAAGAAGTTTTACTCTGATTTGCTGGAAGGCCACAGCAGAAGTTCCATATACTTTCTCAGCAGTGCTTCTGCTCAAGTTTTTGCTGATGTTGCCCTCTGTCCTTTTGAAGCTGTCAAGGTCAGAGTCCAGACACAACCCTATTACGCCAAGGGATTGGCTGATGGGTTCCCGAAGTTATACTACAGTGAAGGTCTTTCAGGTTTCTACAGAGGGATTTTTCCACTTTGGGGACGAAATCTTCCATTCTCGATGATTATGTTCTCGACATTTGAGCATTCAGTGGACTTCATATATCAAAATATCATTCAGCGTAGAAAGGAAGATTGCTCGAGAACCCAACAGCTCGGCGTTACATGTTTAGCTGGCTATGCGGCTGGAGCTGTTGGTACCGTTGTCTCAAATCCAGCGGATAACATTGTTTCCTCTCTTTATAATAAGAAGGCTGATAATATAGTGCAGGCAGTGAAGAACATAGGATTTGGCAATCTATTTACTAGAAGCCTTCCTGTCAGAATCACACTTGTTGGTCCTGTTGTTACTTTGCAGTGGTTCTTCTATGACACCATTAAAGTGCTAAGTGGACTCGATGGTGATGTTAATAAAGAATATTCAAGTGACATCCAAGTTGCCTACAAGTGGAGGGCTCAGCAGGCAAATGGAAGAAGCAAAACTATCAACTTAGAGCTTTCTGGTGAAGGGCAGAACTGTTGA 1002 43.11 MREVEGRRLCQEFSAGYYGLCTVGGMLSAGTTHLAITPFDVLKVNMQVNPIKYNGISSGFSILWREQGPSSLWRGWSGKLFGYGVQGGFKFGLYEYFKKFYSDLLEGHSRSSIYFLSSASAQVFADVALCPFEAVKVRVQTQPYYAKGLADGFPKLYYSEGLSGFYRGIFPLWGRNLPFSMIMFSTFEHSVDFIYQNIIQRRKEDCSRTQQLGVTCLAGYAAGAVGTVVSNPADNIVSSLYNKKADNIVQAVKNIGFGNLFTRSLPVRITLVGPVVTLQWFFYDTIKVLSGLDGDVNKEYSSDIQVAYKWRAQQANGRSKTINLELSGEGQNC 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5344438 5350755 - Maker00006369 Lcy4g0439 629965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0439 333 Pfam Mitochondrial carrier protein 22 102 IPR018108 -
Lcy4g0439 333 Pfam Mitochondrial carrier protein 112 195 IPR018108 -
Lcy4g0439 333 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 8 293 IPR044677 GO:0005315(InterPro)|GO:0005315(PANTHER)|GO:0031305(PANTHER)|GO:0035435(PANTHER)|GO:1990547(InterPro)
Lcy4g0439 333 SUPERFAMILY Mitochondrial carrier 21 285 IPR023395 -
Lcy4g0439 333 Gene3D Mitochondrial carrier domain 21 289 IPR023395 -
Lcy4g0439 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 210 289 IPR018108 -
Lcy4g0439 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 193 IPR018108 -
Lcy4g0439 333 FunFam Mitochondrial phosphate carrier protein 1, mitochondrial 19 290 - -
Lcy4g0439 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 16 100 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0022 Lcy-Chr2:185661 Lcy4g0439 Lcy-Chr4:5344438 2.18E-98 dispersed
Lcy4g0439 Lcy-Chr4:5344438 Lcy10g0054 Lcy-Chr10:784161 6.08E-100 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0439 K15102 - csv:101219895 561.992