Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0441 ATGAATATGGTTTGGATCCTTTTGTTACTCCTCCTTTATATTCAAGGGATTTCAGAAGGGGCCTCAAGACCTGAGGTAGTGAAAGTTGGAGCTATATTTTCACTTAGTTCTGTCAATGGGAAAGTGTCCAAGATTGCCATAGAGGCTGCTGAGAAAGATGTGAATTCTGATCCAAGTGTTCTTGGTGGAAGAAAGTTGTCTATATCTATACATGATGCAAATTACAGTGGATTTCTTGGTATCACTGGAGCAATGAAGTACATGGTGTCTGACACAGTTGCCATCATTGGTCCACAAGATGCTACAATGGCACATATACTCTCACATCTTTCAAATGAACTCCATGTCCCATTATTGTCATATACAGCATTGGACCCGACGCTTGCGACTTTGCAGTATCCGTACTTCATTCAAACAGCTCCAAATGATCAATTCCAGATGACTGCAATTGCAGATATGATTCGTTATTATGGTTGGCATGACATAGTTGTTGTTTTCACTGATGACGATCTATGTCGAAACGGTATGATTGCATTAGGTGATAAACTTGAAGAGAGAGGCTTGAAACTTTCCTCTAAAGTGGCACTTCCCCCTTACCCAACTGCAACTAGAACTCAAGTTCAAGATGAACTGGCAAAGATTAAAATGATGGAATCTCGAGTAATAGTACTGTACACATTTTCGAAAACAGGTTTCTTGGTTTTTGAAGTGGCTCAAAGCCTTAGAATGATGGAAGCTGGATTTGTTTGGATAGCCTCTAGTTGGCTGTCAACAGTAATAGATTCTACTTCACCACTTCCCTTGAAAACTGCCAACTCCATCCAAGGAGTTCTTACGCTTCGTCTACACACACCCGATTCGAAAAGGAAGCAATCTTTTATATCTAGCTGGAACAAGCTGAGTAATGGCTCCATTGGGTTGAATACATATGGCCTATATGCATATGATACTGTTTGGATGATTGCAAAAGGAGTTAAAAAGTTATTTGATCAAAATGGGACCATCTCATTCTCCAAAGATACAAAAGTTGGTAATCTTAGTGGAGAGAGCTTGGATTTTAGTTCACTAGGCATCTTTAATGAAGGAACGGAACTGCTTAACAATTTATTGAATATCAGCATGACTGGTTTGACAGGGCCTATTCAGTTTCTAGATAGATCCCCTTTACATCCTTCATATGAAATCTTAAATGTTGTCAAATCTGGTATGAAGAGAATTGGATACTGGTCCAACGATTCTGGTTTATCTGTCGTGGCGCCAGAAATGTTTTATGGAAAAGCGGCCAATCATTCAATGTCAACCCAACAGTTAAGCAGCACAGTGTGGCCCGGGGGATTGACAGTAAAGCCGCGTGGCTGGGTTCTTCCACTCGATGGAAAGCGGTTAAGAATCGGTGTTCCACGCAGAGTTAGTTATCAGCAATTTGTGACACCAGGAAATGGGAATGGCACAATCAAAGGATACTGCATTGATGTGTTCATTGCTGCCATCAATTTGCTTCCTTATGCAGTTAATTATGAGTTCGTTTTGTTTGGAGATGGTGAGGATAATCCTAGCTACTTTGAGCTCGTAAATAAAGTTTCATTGAAGGAATTTGATGCTGCTGTTGGTGACATTGCAATTGTGACTAGTCGGACAAAGATCGTCGATTTTACGCAGCCTTATATCGACTCGGGGCTAGTAGTGCTGACCCCAGTCAAGAAGTTGAATTCAAGTCCTTTGGCATTCCTTCGCCCATTCACACCAATGATGTGGGTTGTCACAGCAGCCTTTTTTCTCCTAATTGGATTTGTTGTGTGGATTTTGGAACATCGAAAAAATGACGAATTCCGAGGACATCCTAGGACGCAACTTGTCACAATCCTTTGGTTTGGCTTCTCTACTATGTTTTTTGCACATAGAGAAAATGTCGTGAGCACGCTCGGCCGATTCGTGCTCGTCGTGTGGCTTTTCGTGGTTCTAATTATCAACTCAAGCTACACTGCTAGTCTGACATCGATATTCACAGTACAACAACTAGCCTCACCTATCACAGGGATTGATTCATTGATAACTAGCAATGTGCTTATAGGATTTCAAGTTGGTTCATTTGCTGAAAGTTATTTAAGTGAGCAACTTAACGTCCAAAAGTCTAGGCTCATTGCTCTTGGATCCCCAGAAGAGTATGCTGCTGCCCTCAATAACGGAACCGTCGCCGCTATTGTCGACGAACAGCCATACATCGATCTCTTTCTCACCGAGTATTGCGATTTTTCGATTAGGGGCCAACAGTTCACCAAAAGTGGATGGGGATTTGCATTTCCACGAGACTCTCCATTGGCGGTGGACTTATCGACGGCCATTCTCACACTATCAGAGAACGGCCATCTTCAAAAGATTCACGACAAGTGGTTCTCAAGAAAGTCTTGCAGTTCCGAAGATTCTAATCTCGATTTGGAGCAACTTCACTTGCAGAGCTTCATCGGATTGTTCTCCATCTGTGCCGGCGTCTGTTTATTCGCTCTTCTCCTTCACTTTTGCTTGACGATGTGCCAATTCAACCGCCATTTGAAGCAAGATCCAGAACCTTCGACCAGCTGCGATTCTAGCCCTACGCGTCTGCGAAAATTCTTAGCGTTTGCCGACAAAAAGAAGGATCGAAAGACCAGCTATTCCAAAAGAAAGGTCGAAGATACTTTCTCCACCCAACGTGGAGCCGATGTTTAG 2706 42.42 MNMVWILLLLLLYIQGISEGASRPEVVKVGAIFSLSSVNGKVSKIAIEAAEKDVNSDPSVLGGRKLSISIHDANYSGFLGITGAMKYMVSDTVAIIGPQDATMAHILSHLSNELHVPLLSYTALDPTLATLQYPYFIQTAPNDQFQMTAIADMIRYYGWHDIVVVFTDDDLCRNGMIALGDKLEERGLKLSSKVALPPYPTATRTQVQDELAKIKMMESRVIVLYTFSKTGFLVFEVAQSLRMMEAGFVWIASSWLSTVIDSTSPLPLKTANSIQGVLTLRLHTPDSKRKQSFISSWNKLSNGSIGLNTYGLYAYDTVWMIAKGVKKLFDQNGTISFSKDTKVGNLSGESLDFSSLGIFNEGTELLNNLLNISMTGLTGPIQFLDRSPLHPSYEILNVVKSGMKRIGYWSNDSGLSVVAPEMFYGKAANHSMSTQQLSSTVWPGGLTVKPRGWVLPLDGKRLRIGVPRRVSYQQFVTPGNGNGTIKGYCIDVFIAAINLLPYAVNYEFVLFGDGEDNPSYFELVNKVSLKEFDAAVGDIAIVTSRTKIVDFTQPYIDSGLVVLTPVKKLNSSPLAFLRPFTPMMWVVTAAFFLLIGFVVWILEHRKNDEFRGHPRTQLVTILWFGFSTMFFAHRENVVSTLGRFVLVVWLFVVLIINSSYTASLTSIFTVQQLASPITGIDSLITSNVLIGFQVGSFAESYLSEQLNVQKSRLIALGSPEEYAAALNNGTVAAIVDEQPYIDLFLTEYCDFSIRGQQFTKSGWGFAFPRDSPLAVDLSTAILTLSENGHLQKIHDKWFSRKSCSSEDSNLDLEQLHLQSFIGLFSICAGVCLFALLLHFCLTMCQFNRHLKQDPEPSTSCDSSPTRLRKFLAFADKKKDRKTSYSKRKVEDTFSTQRGADV 901
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5357307 5365520 - Maker00006091 Lcy4g0441 629967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0441 901 MobiDBLite consensus disorder prediction 876 895 - -
Lcy4g0441 901 FunFam Glutamate receptor 457 573 - -
Lcy4g0441 901 FunFam Glutamate receptor 142 304 - -
Lcy4g0441 901 Pfam Ligand-gated ion channel 800 830 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy4g0441 901 Pfam Receptor family ligand binding region 44 400 IPR001828 -
Lcy4g0441 901 Gene3D - 456 572 - -
Lcy4g0441 901 FunFam Glutamate receptor 573 703 - -
Lcy4g0441 901 PIRSF IGluLR_plant 1 900 IPR017103 -
Lcy4g0441 901 Gene3D - 45 390 - -
Lcy4g0441 901 FunFam Glutamate receptor 699 802 - -
Lcy4g0441 901 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 27 876 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Lcy4g0441 901 Gene3D - 573 714 - -
Lcy4g0441 901 SUPERFAMILY Periplasmic binding protein-like II 439 800 - -
Lcy4g0441 901 Gene3D - 142 415 - -
Lcy4g0441 901 MobiDBLite consensus disorder prediction 876 901 - -
Lcy4g0441 901 Gene3D - 717 805 - -
Lcy4g0441 901 SMART GluR_14 463 800 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy4g0441 901 Pfam Bacterial extracellular solute-binding proteins, family 3 475 583 IPR001638 -
Lcy4g0441 901 CDD PBP1_GABAb_receptor_plant 28 419 IPR044440 -
Lcy4g0441 901 CDD GluR_Plant 460 798 - -
Lcy4g0441 901 SUPERFAMILY Periplasmic binding protein-like I 21 453 IPR028082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0238 Lcy-Chr2:1871773 Lcy4g0441 Lcy-Chr4:5357307 3.45E-131 dispersed
Lcy4g0441 Lcy-Chr4:5357307 Lcy8g1444 Lcy-Chr8:41101731 2.48e-310 dispersed
Lcy4g0441 Lcy-Chr4:5357307 Lcy9g2339 Lcy-Chr9:47757741 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0441 K05387 - csv:101208602 1481.85