Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0505 ATGCCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTGTTCTCCATTCGTCTCTTCGCTCAATCAAGAAGGACTCTATCTTCAGCGAGTCAAACTCGGTCTCTCCGATCCCACTCAGTCCCTCTCTTCATGGAACCCTCGCGACGCCACTCCCTGCAACTGGTCCGGCATCACCTGCGATTCCGTCTCTCGTTCTGTCGTCGCCGTCGACCTCTCCGATTTCCAGCTCGCCGGACCTTTTCCGACCTTCTTCTGTCGCCTTCCTTTTCTCTCTTCTCTCTCTCTTTCTAACAACGCCATTAACGCTTCTCTTCCCGACGATGTTGCTTCCTGTTCTGGCCTCCAGCGGCTTAACTTGTCGCAGAATCTTCTCGCTGGTTCTATTCCCGATGGCCTGTCCAAGATCTCGAATCTTCGCTTGCTGGATCTCTCTGGAAATAACTTCTCCGGGGAGATTCCGCCGAGTTTCGGTGGGTTTCGCCGGCTTGAGACGCTGAATTTGGTTGATAATCTTTTGAATGGTACTATTCCGGGGAGTTTGGGTAATATTTCGAGTTTGAAAGAACTTCAACTTGCGTATAATCCGTTTGCCCGGAGTGAGATTCCGAGTGCATTTGGGAACTTGACGAAGCTGGAGATTCTCTGGCTTGCTAACTGTAATCTTGCCGGTCAGATTCCGGAAAGCGTTGGCCGGATGACTCGGCTTAAGAATCTGGACTTGTCGAACAATAGACTCAGTGGGTCGATTCCGGTGTCAATTACTCAAATGAAAAGTCTAGTTCAAATCGAACTGTTTAACAACTCGCTCTCCGGCGAGTTGCCTTTGGGATTGTCTAATTTAACTGCACTGCGACGAATTGATGTGTCGATGAATCACTTAACTGGAACAATTCCAGATGAGCTTTGTGCATTACAGCTTGAGTCGCTAAATTTGTTCGAGAATCGATTGGAAGGGCCTTTGCCGGAGAGTATCGTTAGGTCCCCATACTTGAATGAGCTCAAATTGTTTAACAACAAGCTTAGTGGACAGTTACCCAGTAAACTCGGCCAAAACTCGCCATTAGTGCATCTTGATGTTTCATACAACGGATTTTCTGGCGGAATCCCGGAAAACTTGTGTGCAAAAGGGGCATTGGAAGAGCTTATATTGATTTACAATTCGTTTTCCGGTAGAATCCCGGCGAGCCTTGGAAAATGCACGAGCTTAAGCCGGATTCGGATGAGGAACAACAAACTCTCGGGTTCGGTTCCTGATGATTTTTGGGGTCTGCCTAATGTGTATTTGCTTGAGCTCGTCGAGAATTCGCTCTCTGGGTCTATTTCTTCGATGATATCTACCGCTAAGAATCTCTCTATTTTGATGATCTCAGAAAATCAATTTTCAGGGTCAATTCCGGACGAGATTGGGTCGTTAAGCAATCTGACTGAACTTTCAGGTAGCGACAATATGTTTTCCGGTCAAATCCCGGCAACTTTGGTGAAGTTAAGCCTGTTGGGTAAATTCGATCTAAGCGAGAACAAACTTTCTGGTGAATTACCAAAGAGAATTGGAGCTCTGAAAAGGCTAAGCGAGCTAAATTTGGCAAACAACAAGCTATCTGGCAATATCCCGAGTGAGATTGGAAGCCTGCCTGTGCTTAATTATCTCGATCTCTCTAGTAACCATCTCAGTGGAAGCATACCTCTTGAATTGCAGAATTTGAAACTGAATTTGCTAAATCTGTCGAACAATCTGTTGTCAGGAGTACTTCCTCCTCTTTATGCCGAGGAGTTTTACAGAGATAGCTTTCTGGGTAATCCAGGTTTGTGCAATAACGCCCCAAGTCTTTGTCCTCGCGTTGGAAAAGGCAAAAACCAAGGCTACTGGCTTCTCAGAGCCATTTTTCTACTTGCTATCATTGTTTTTGTTGTTGGGGTAATTTGGTTCTTCTTTAAGTACAAGGAATTCAAGAAGAACAAGAAAGGAATTGTCATTTCCAAGTGGAGATCATTCCACAAACTTGGTTTCAGTGAATATGAAATCGCAGACTGTCTCAGTGAAGACAAAGTCATCGGAAGTGGAGCATCCGGCAAAGTGTACAAAGTTGTGCTGAAAAACGGCGAGGTTGTGGCCGTGAAGAAGCTATGGCAAGGAACAAGAAAAGAGGACACCAGTTTGGATTCAGAGAAAGATGGATTTGAGGCTGAAGTTGAGACATTGGGAAAGATCCGCCACAAGAATATTGTAAGGTTATGGTGCTGCTGCAACACCGGCAATTGCAAGCTGCTTGTTTACGAATACATGCCTAATGGGAGCTTGGGAGATTTGCTGCACGGCAGCAGAAAGCGCTTTTTGGATTGGCCTACAAGGTATAAAGTAGCTTTGGATGCAGCTGAAGGGCTCTCTTACTTGCATCACGACTGTGCTCCTCCAATTGTTCATAGGGATATAAAATCCAACAATATATTGCTTGATTCTGAGTTTGGAGCTAGAGTTGCAGACTTTGGATTGGCCAAGTTTTTGAATGCTGGCAAGGGCTCAGAATCAATGTCTGTCATTGCTGGTTCTTGCGGTTATATTGCACCAGAATATGCTTATACTTTAAGAGTAAACGAAAAGAGCGACATCTACAGCTTTGGGGTGGTGATTTTAGAGCTGGTGACTGGGAGGCCTCCAAATGATCCAGAATTTGGAGACAAAGACTTGGCAAAGTGGGTCTACACCGCTGTTGACCGCAGAGGACTCGACCAAGTGATCGATCCTAAACTCGGTTCCGAATACAAGGAAGAAATATACAGAGTCCTCGACGTGGGACTTCTCTGCACAAGCTCACTCCCCATGAACCGCCCCTCAATGAGAAGAGTCGTCAAACTGCTGCAGGAGGCTGCCACAGAAACCAGACACGCCATTGTTACAAAGGAAGCCAAACTTTCTCCATATTTTTCCTAG 2937 45.56 MPSLLLLLLLLLLLLCSPFVSSLNQEGLYLQRVKLGLSDPTQSLSSWNPRDATPCNWSGITCDSVSRSVVAVDLSDFQLAGPFPTFFCRLPFLSSLSLSNNAINASLPDDVASCSGLQRLNLSQNLLAGSIPDGLSKISNLRLLDLSGNNFSGEIPPSFGGFRRLETLNLVDNLLNGTIPGSLGNISSLKELQLAYNPFARSEIPSAFGNLTKLEILWLANCNLAGQIPESVGRMTRLKNLDLSNNRLSGSIPVSITQMKSLVQIELFNNSLSGELPLGLSNLTALRRIDVSMNHLTGTIPDELCALQLESLNLFENRLEGPLPESIVRSPYLNELKLFNNKLSGQLPSKLGQNSPLVHLDVSYNGFSGGIPENLCAKGALEELILIYNSFSGRIPASLGKCTSLSRIRMRNNKLSGSVPDDFWGLPNVYLLELVENSLSGSISSMISTAKNLSILMISENQFSGSIPDEIGSLSNLTELSGSDNMFSGQIPATLVKLSLLGKFDLSENKLSGELPKRIGALKRLSELNLANNKLSGNIPSEIGSLPVLNYLDLSSNHLSGSIPLELQNLKLNLLNLSNNLLSGVLPPLYAEEFYRDSFLGNPGLCNNAPSLCPRVGKGKNQGYWLLRAIFLLAIIVFVVGVIWFFFKYKEFKKNKKGIVISKWRSFHKLGFSEYEIADCLSEDKVIGSGASGKVYKVVLKNGEVVAVKKLWQGTRKEDTSLDSEKDGFEAEVETLGKIRHKNIVRLWCCCNTGNCKLLVYEYMPNGSLGDLLHGSRKRFLDWPTRYKVALDAAEGLSYLHHDCAPPIVHRDIKSNNILLDSEFGARVADFGLAKFLNAGKGSESMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRPPNDPEFGDKDLAKWVYTAVDRRGLDQVIDPKLGSEYKEEIYRVLDVGLLCTSSLPMNRPSMRRVVKLLQEAATETRHAIVTKEAKLSPYFS 978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6134983 6138966 + Maker00006146 Lcy4g0505 630031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0505 978 SMART LRR_typ_2 522 546 IPR003591 -
Lcy4g0505 978 SMART LRR_typ_2 90 114 IPR003591 -
Lcy4g0505 978 SMART LRR_typ_2 235 259 IPR003591 -
Lcy4g0505 978 SMART LRR_typ_2 283 307 IPR003591 -
Lcy4g0505 978 SMART LRR_typ_2 138 161 IPR003591 -
Lcy4g0505 978 SMART LRR_typ_2 186 210 IPR003591 -
Lcy4g0505 978 Pfam Leucine rich repeat 93 151 IPR001611 GO:0005515(InterPro)
Lcy4g0505 978 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g0505 978 SUPERFAMILY L domain-like 37 364 - -
Lcy4g0505 978 ProSiteProfiles Protein kinase domain profile. 681 967 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0505 978 PRINTS Leucine-rich repeat signature 546 559 - -
Lcy4g0505 978 PRINTS Leucine-rich repeat signature 238 251 - -
Lcy4g0505 978 Gene3D Transferase(Phosphotransferase) domain 1 764 974 - -
Lcy4g0505 978 SUPERFAMILY L domain-like 355 606 - -
Lcy4g0505 978 Pfam Protein kinase domain 683 904 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0505 978 Gene3D Phosphorylase Kinase; domain 1 664 763 - -
Lcy4g0505 978 Pfam Leucine Rich Repeat 213 234 IPR001611 GO:0005515(InterPro)
Lcy4g0505 978 Pfam Leucine Rich Repeat 357 376 IPR001611 GO:0005515(InterPro)
Lcy4g0505 978 Pfam Leucine Rich Repeat 286 307 IPR001611 GO:0005515(InterPro)
Lcy4g0505 978 Pfam Leucine Rich Repeat 525 546 IPR001611 GO:0005515(InterPro)
Lcy4g0505 978 Pfam Leucine Rich Repeat 188 211 IPR001611 GO:0005515(InterPro)
Lcy4g0505 978 Pfam Leucine Rich Repeat 549 570 IPR001611 GO:0005515(InterPro)
Lcy4g0505 978 Pfam Leucine Rich Repeat 164 185 IPR001611 GO:0005515(InterPro)
Lcy4g0505 978 Pfam Leucine Rich Repeat 237 258 IPR001611 GO:0005515(InterPro)
Lcy4g0505 978 Pfam Leucine Rich Repeat 404 426 IPR001611 GO:0005515(InterPro)
Lcy4g0505 978 Pfam Leucine Rich Repeat 452 474 IPR001611 GO:0005515(InterPro)
Lcy4g0505 978 SMART serkin_6 681 977 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0505 978 PANTHER RECEPTOR-LIKE PROTEIN 55 381 955 - -
Lcy4g0505 978 Gene3D Ribonuclease Inhibitor 22 201 IPR032675 -
Lcy4g0505 978 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Lcy4g0505 978 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 23 186 - -
Lcy4g0505 978 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524(InterPro)
Lcy4g0505 978 ProSiteProfiles Leucine-rich repeat profile. 237 259 IPR001611 GO:0005515(InterPro)
Lcy4g0505 978 SUPERFAMILY Protein kinase-like (PK-like) 674 955 IPR011009 -
Lcy4g0505 978 Gene3D Ribonuclease Inhibitor 280 616 IPR032675 -
Lcy4g0505 978 FunFam Receptor-like protein kinase HSL1 664 763 - -
Lcy4g0505 978 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 764 972 - -
Lcy4g0505 978 FunFam Leucine-rich receptor-like protein kinase family protein 204 302 - -
Lcy4g0505 978 Gene3D Ribonuclease Inhibitor 202 261 IPR032675 -
Lcy4g0505 978 FunFam Receptor-like protein kinase HSL1 308 615 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0867 Lcy-Chr2:7877605 Lcy4g0505 Lcy-Chr4:6134983 4.24E-71 dispersed
Lcy2g0868 Lcy-Chr2:7887275 Lcy4g0505 Lcy-Chr4:6134983 1.52E-78 dispersed
Lcy4g0505 Lcy-Chr4:6134983 Lcy5g1855 Lcy-Chr5:41365553 1.13E-191 dispersed
Lcy8g1692 Lcy-Chr8:43517851 Lcy4g0505 Lcy-Chr4:6134983 2.03E-18 dispersed
Lcy13g1436 Lcy-Chr13:32853718 Lcy4g0505 Lcy-Chr4:6134983 3.33E-88 transposed
Lcy5g0425 Lcy-Chr5:4426558 Lcy4g0505 Lcy-Chr4:6134983 7.35E-64 transposed
Lcy1g0315 Lcy-Chr1:2788352 Lcy4g0505 Lcy-Chr4:6134983 2.55E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65847 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0505 - - - 0.0