Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0506 ATGTCTGAAGAACAACCAATTTCAAATGCTTTCATTTGCAGCATCCCAACACTTGGATCTAACAATAACATCCCTCCTGCTCTAAAGAAGAAGAGGAATCTCCCTGGAAATCCAGGCAAGAAGCTTTATCCCGAAGCGGAAGTCGTGGCGTTGTCGCCCAAGACCCTAATGGCGACGAACCGATTCTTATGTGAGATATGTGGGAAGGGTTTTCAGAGGGATCAAAACCTACAGCTCCATAGGAGAGGACACAACCTTCCATGGAAGCTGAAGCAAAGAAGCAATAGCAACAAAGAGCCAAGGAAGAGAGTTTATGTTTGTCCAGAGAAGAGCTGTGTCCACCACCATCCTTCAAGGGCTCTTGGAGACCTCACAGGAATTAAAAAGCACTTTTGCAGGAAGCACGGCGAGAAGAAGTGGAAGTGCGAGAAGTGCTCCAAGAAATATGCTGTGCAGTCAGATTGGAAAGCACACTCCAAAACTTGTGGCACCAAAGAGTATAAATGTGACTGTGGGACTCCATTTTCAAGGAGAGATAGCTATGTAACTCACAGAGCATACTGTGTGGCATTAGCAGAAGAAACAGCAAGACTAAATGCAGCATCATCAACCATTGCCAACAACTCAATGGCAGCCACAGCTGATAGCAACAACAACATCAACTACCATTTCTTAAAGCCCACCAACAACAACATTATTTCTCACCAATACTTCCCCTCCAACTTTTTCAAGCCAGATCATGATCATCAAACTGCCCAAATCTTCCTCAACAACAACAACAATTCTCTCACACCCTTTTTGATTCCCCAATTAGCAGCTCCAAGTTCCCAACAAATCAATAATCTCCAAGACAACATCATCATCAACAGCAATTTCCATCATCACCCTCTTCTTTCAGTTCCTTCCTTGTACAGCCATGAGGAACAACAACAAGCCCATCAAGCTCTGGCTAGCTCAGCTGCATCAGCCAACATGTCAGCCACTGTTCTGCTGCAAAAGGCTGCACAAATTGGAGTGACAAGCTCCACAACAACAGACCCATCCTCATCATCATCACCATTGATGATGGGCAGTTTTGGCTTGAAATTGACTGATGGGAAGGCCTTGTTTTCAGGGCTTTATGGCTCAATAATGAACTACTCAAACTCTTTGCCAAGCTGTTCAAGCCTTGAAAATGGTGGAGAAGACTCTGCTGCCAGTAACTTGGTCCAGATGTACCCTGCTGCTAAGAGAATTAGGCACACTGTTAGTGAAGAAAGTGTCACTGGTGGAGAAGGAGAGACAAGGGATTTCTTGGGTGTGGGCATGCACACCATATGCCATCCATCTGCTGTGAATGGATGGATCTGA 1350 45.11 MSEEQPISNAFICSIPTLGSNNNIPPALKKKRNLPGNPGKKLYPEAEVVALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNSNKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCDCGTPFSRRDSYVTHRAYCVALAEETARLNAASSTIANNSMAATADSNNNINYHFLKPTNNNIISHQYFPSNFFKPDHDHQTAQIFLNNNNNSLTPFLIPQLAAPSSQQINNLQDNIIINSNFHHHPLLSVPSLYSHEEQQQAHQALASSAASANMSATVLLQKAAQIGVTSSTTTDPSSSSSPLMMGSFGLKLTDGKALFSGLYGSIMNYSNSLPSCSSLENGGEDSAASNLVQMYPAAKRIRHTVSEESVTGGEGETRDFLGVGMHTICHPSAVNGWI 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6142363 6145022 - Maker00006378 Lcy4g0506 630032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0506 449 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Lcy4g0506 449 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Lcy4g0506 449 Gene3D Classic Zinc Finger 58 85 - -
Lcy4g0506 449 Gene3D Classic Zinc Finger 118 197 - -
Lcy4g0506 449 SMART c2h2final6 62 84 IPR013087 -
Lcy4g0506 449 SMART c2h2final6 140 160 IPR013087 -
Lcy4g0506 449 SUPERFAMILY beta-beta-alpha zinc fingers 61 160 IPR036236 -
Lcy4g0506 449 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 101 135 - -
Lcy4g0506 449 Pfam Zinc finger, C2H2 type 62 84 IPR013087 -
Lcy4g0506 449 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 166 204 - -
Lcy4g0506 449 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Lcy4g0506 449 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 438 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy4g0506 449 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 139 163 - -
Lcy4g0506 449 FunFam protein indeterminate-domain 12-like 41 111 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0506 Lcy-Chr4:6142363 Lcy5g0280 Lcy-Chr5:2632744 4.59E-93 dispersed
Lcy4g0506 Lcy-Chr4:6142363 Lcy8g1391 Lcy-Chr8:40605432 1.12E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19940 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0506 K25870 - csv:101207997 525.013