Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0522 ATGGCACAGTTGCCGCCGAAGATCCCAAATATGGCGCCTAATTGGCCGGAATTTTCCCGTCAGAAAATCCCTTCCATGGAAAGCTTTGCACCCACCACCACCACGGCGGCGGCGACGACGACGGTTACTCACCAGAATCCTTCTTGGGTCGATGAATTTCTTGATTTTTCTTCTGCCAGACGTGGGTCCCACCGGCGGTCCGTGAGCGATTCGATCACGTTCCTCGAAATGCCGATGCTGGAGGAGGATTGCCGGGGCTCCGCCGCCGCGCCACCACCAGGATCCGGCTCCGGCGACCGGAATGAATTCGATAGGTTCGACGATGAGCAGTTCATGTCGATGTTCAACGATGAAATCTCCGGCGCCGTGGCGCCCACCGTGTCGTCGTCGAACCCCTCCACGCCGTCCGATCACAACAGCATTAACGACGAGAAAGACGGCCAAAACGACGGCAAGAAAAACCAGAACAAAAACGAATCCGACGAAGTACAGAGCCAACAGCAATCGGAAACTCAAACACAATCCAATTCCACGGCGGCGGCTGCGGCTGCTTCCGCCGATCGGATAACAGACCCGAAAAGAGTCAAAAGAATTCTGGCAAATCGGCAATCGGCGCAAAGATCACGAGTGAGAAAGCTTCAATACATATCAGAATTGGAACGAAGCGTCACATCGTTACAGGCTGAAGTTTCGGTGCTGTCGCCGCGAGTGGCGTTTTTGGACCACCAGCGATTGCTTCTCAACGTCGACAACAGTGCTCTGAAGCAAAGAATCGCCGCCCTTGCACAGGATAAGATTTTTAAAGATGCTCATCAAGAGGCACTAAAAAGAGAGATAGAGAGACTGAGGCAAGTATATCATCAACAAAACATCAAGAAGATGGAAAACAATACAGCACCATCACCATCGCCACCGACTCCGTCGCCTCCCGTCACGGCCACGGCCACGGCCACCGACGTCGCCAAACTTCCGAACGTAGATCAAACAGAGCAAGTTCTAAACGTCGTCGTTTAG 1014 53.25 MAQLPPKIPNMAPNWPEFSRQKIPSMESFAPTTTTAAATTTVTHQNPSWVDEFLDFSSARRGSHRRSVSDSITFLEMPMLEEDCRGSAAAPPPGSGSGDRNEFDRFDDEQFMSMFNDEISGAVAPTVSSSNPSTPSDHNSINDEKDGQNDGKKNQNKNESDEVQSQQQSETQTQSNSTAAAAAASADRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNIKKMENNTAPSPSPPTPSPPVTATATATDVAKLPNVDQTEQVLNVVV 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6287019 6290884 + Maker00006367 Lcy4g0522 630048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0522 337 Pfam Basic region leucine zipper 190 238 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g0522 337 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 196 211 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g0522 337 SMART brlzneu 189 253 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g0522 337 MobiDBLite consensus disorder prediction 139 159 - -
Lcy4g0522 337 MobiDBLite consensus disorder prediction 123 138 - -
Lcy4g0522 337 MobiDBLite consensus disorder prediction 84 104 - -
Lcy4g0522 337 PANTHER BASIC LEUCINE ZIPPER 34 1 313 IPR052483 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER)
Lcy4g0522 337 MobiDBLite consensus disorder prediction 160 183 - -
Lcy4g0522 337 Gene3D - 192 263 - -
Lcy4g0522 337 MobiDBLite consensus disorder prediction 123 189 - -
Lcy4g0522 337 Coils Coil 272 292 - -
Lcy4g0522 337 MobiDBLite consensus disorder prediction 294 313 - -
Lcy4g0522 337 CDD bZIP_plant_RF2 194 244 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g0522 337 SUPERFAMILY Leucine zipper domain 193 247 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g0522 337 FunFam Basic leucine zipper 61 192 265 - -
Lcy4g0522 337 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 191 243 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0522 Lcy-Chr4:6287019 Lcy9g1335 Lcy-Chr9:38118924 8.05E-75 dispersed
Lcy4g0522 Lcy-Chr4:6287019 Lcy9g0965 Lcy-Chr9:32325539 8.06E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19941 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0522 - - - 0.0