Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0524 ATGGAGCGAGGATCCAGTGGAAGCAGTGCCGGTGGCAGCACCAGCTCTTTCATTGCAGGATTTGCAAACAACAACAATAATGATAACTCTAACACTGCTCTTTCTTCTTCAGCCATGATGATGATCGATACTAATCCCCAAATATTGGAACAACACAACAATAACAACAACAGCGACAGCAGCAACAACAATAACAAGATGTTTTTGCCTTTGTCTTGGTCGTCTGCTACTCCCAACAACGCTCCAAGGGTTTCTGCTTTTGTCCCTCAGCTCAATAACAACAATGATCTTCTTAACAACTCCACTTGCCGAGCTAAAATCATGGCTCATCCTCTCTTTCCTCGCCTCCTGGCCGCCTACGTCAACTGCCAGAAGGTGGGTGCACCGCCGGAAGTGGTGGCGAGGCTAGAGCAGGCGTGCGCGGTGGCCGCCGGGAGCTGTAGGGTGGCGGCACGTGGGGATGATCCAGCGCTGGATCAGTTCATGGAAGCCTACTGTGAAATGTTGACCAAGTACGAACAAGAGTTGACCAAGCCTTTCAAAGAAGCAATGGTTTTCTTCTCAAGAATCGAGTCTCAGCTCAAAGCCCTAGCTGTTTCTTCTTCTACTTCTGATGGTTGTGAATTGGTCGGGCAAAACGAGTGTTCGAAGGAGGTCGAGGTCGATATGAATGAAAACTACATTGACCCTCAAGCTGAAGAGAAGGAACTCAAAGGCCAACTTTTGCGCAAATACAGCGGATATCTCGGCAGCCTAAAGCAAGAGTTTCTTAAAAAGAAGAAGAATGGAAAGCTTCCGAAAGAAGCTCGACAACAACTTCTCGACTGGTGGAGCCGACACTATAAATGGCCATATCCCTCGGAGTCGCAAAAGGTGGCGCTGGCGGAGTCGACGGGGCTGGACTTGAAGCAGATCAATAACTGGTTCATCAACCAAAGAAAGCGCCATTGGAAGCCATCAGAGGATATGCAGTTTGTGGTGATGGATGCTGCTCATCCACACTACTATTTGGACAATGTCATCTGCAATCCCTTCTCTATGGATTGTTCTTCCACTCTTTTCTGA 1065 48.17 MERGSSGSSAGGSTSSFIAGFANNNNNDNSNTALSSSAMMMIDTNPQILEQHNNNNNSDSSNNNNKMFLPLSWSSATPNNAPRVSAFVPQLNNNNDLLNNSTCRAKIMAHPLFPRLLAAYVNCQKVGAPPEVVARLEQACAVAAGSCRVAARGDDPALDQFMEAYCEMLTKYEQELTKPFKEAMVFFSRIESQLKALAVSSSTSDGCELVGQNECSKEVEVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNPFSMDCSSTLF 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6300644 6304558 - Maker00006176 Lcy4g0524 630050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0524 354 SMART KNOX1_2 101 145 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy4g0524 354 SMART HOX_1 258 323 IPR001356 GO:0003677(InterPro)
Lcy4g0524 354 ProSiteProfiles ELK domain profile. 236 256 IPR005539 GO:0003677(InterPro)
Lcy4g0524 354 Gene3D - 261 323 - -
Lcy4g0524 354 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 99 326 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy4g0524 354 FunFam Homeobox protein knotted-1-like 2 261 323 - -
Lcy4g0524 354 Pfam KNOX2 domain 153 197 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy4g0524 354 SMART ELK_2 236 257 IPR005539 GO:0003677(InterPro)
Lcy4g0524 354 ProSiteProfiles 'Homeobox' domain profile. 256 319 IPR001356 GO:0003677(InterPro)
Lcy4g0524 354 SUPERFAMILY Homeodomain-like 258 333 IPR009057 -
Lcy4g0524 354 SMART KNOX2_2 148 199 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy4g0524 354 CDD homeodomain 268 320 IPR001356 GO:0003677(InterPro)
Lcy4g0524 354 ProSitePatterns 'Homeobox' domain signature. 294 317 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy4g0524 354 Pfam KNOX1 domain 104 141 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy4g0524 354 Pfam ELK domain 236 257 IPR005539 GO:0003677(InterPro)
Lcy4g0524 354 Pfam Homeobox KN domain 276 315 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2164 Lcy-Chr13:40572241 Lcy4g0524 Lcy-Chr4:6300644 4.19E-76 dispersed
Lcy4g0524 Lcy-Chr4:6300644 Lcy9g1996 Lcy-Chr9:44828107 1.61E-87 dispersed
Lcy1g0468 Lcy-Chr1:4080190 Lcy4g0524 Lcy-Chr4:6300644 5.86E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19942 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0524 - - - 0.0