Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0538 ATGAACCCGCGATTTGGGTTTTTGTTGCTGGTTTTGAGTTCTGTTCTACTGGGTGCTGATTCAAGGTGCCCTCCAACATGCGATTTAGCTTTAGGTTCGTACTTTGTACCGCAGGGCAGCGATTTGACTCGCATCTCCAACTTGTTTCGGTTGCCGTCTCCTGATATCATCGTCAGCTACAACAGAGATAAAGTTCCCAACAGAGACACTGTTTTGGCCGGCGACAGGATCAACATTCCATTCTCCTGCGACTGTATTAGTGATACTTTTCTGGGTCATACGTTTCAGTACACGATTAACAATCAAGATACTTACGATAGAATTGCGAATACATTCTATTCGGGCCTGACTACGGTGGAAATGTTACAGAGATTCAATACTTTTGATCCTCTTAATCTTACTCCTGGTAGCAGTTTGAATGTTGTGGTGAACTGCTCCTGTGGGAATCCTGATGTTTCGAAGACATATGGGCTGTTTGTCACTTACCCAATTCGATCCAATGATAGTTGGGAAAGCTTGCAAAGAGATACAAATGTCAGCTCGGATTTGCTGCGGCAGTACAATCCGGATGTGAATTTCAGCGAAGGAAATTTGATCTTTATTCCAGGCAGAGGACTTGCAGGTGGAGCCATTGCAGGCATAATTGTAGGTGCAGTACTTGGGGTTCTACTTGTAGCAGGCGTCATTTACATTGTCATTCGAAGGAGGAAGTCAAAAAGTTCAAAATTGCTGGCGTTCTCCCAAGATTTGTCTTCTCAAGACGAGCGTGGTTTTGCCCCTGGAAGTTCCTTGGATAAATCTACTGAATCAAATGGTCAAGGTGGTGGTGGCATAGCTGCCATTACAGGTATTACTGTGGAGAAATCAGTGGATTTCTCATATGAAGAACTTGCAAAGGCCACCGACGACTTTAGCTTGGCTAACAAAATTGGGGAAGGTGGTTTCGGATCGGTTTATTATGCAGAACTCAGAGGAGAGAAAGCAGCAATAAAGAAGATGGATATGCAAGCTACAAAGGAGTTCCTTGCAGAAATTAAGGTTCTAACACGCGTTCACCACTTGAACCTGGTGCGCTTGATAGGCTATTGTGTTGAGAATTCTCTATTCCTAGTCTATGAGTACATTGAGAATGGCAACCTAAGCCAACATTTACGTGGCACAGGTCATGATCCATTGCCATGGCCTTCTAGGGTCCAAATAGCCCTTGATTCAGCTCGAGGCCTTGAGTATATCCACGAGCACACCGTTCCCGTTTATATTCATCGTGATATTAAATCTGCCAACATATTGATTGACAAAAATTTTCATGGAAAGGTTGCAGACTTTGGGTTAACCAAGTTGACTGAAGTTGGAAACTCGTCGCTTCCCACTCGTCTTGTGGGCACATTTGGATATATGCCTCCTGAATATGCACAATATGGCGACGTTTCTCCGAAGATTGACGTATATGCTTTTGGTGTCGTTCTTTACGAGCTTATTTCAGCCAAGGAAGCTGTAGTCAAGACAAACAGAGCCAGCGCGATTAATGAATCGAAAGGCCTTGTCGCTTTGTTTGAAGATGTCCTGAACCAACCCGACGCAAAAGAGAACCTTCACAAGCTAGTCGACCCTAGACTCGAAGAGAACTACCCTCTTGATTCGGTTTTCAAGATGGCTCAGCTTGCCAAGGCATGTACACATGAGAATCCACAGCTACGTCCAAGCATGAGATCCATTGTGGTTGCTCTCATGACACTTTCTTCGGCAACAGAGGATTGGGACGTCGGCTCTTTCTACGAAAACCAAGCTCTCGTCAACTTGATGTCGGGAAGGTAG 1815 44.68 MNPRFGFLLLVLSSVLLGADSRCPPTCDLALGSYFVPQGSDLTRISNLFRLPSPDIIVSYNRDKVPNRDTVLAGDRINIPFSCDCISDTFLGHTFQYTINNQDTYDRIANTFYSGLTTVEMLQRFNTFDPLNLTPGSSLNVVVNCSCGNPDVSKTYGLFVTYPIRSNDSWESLQRDTNVSSDLLRQYNPDVNFSEGNLIFIPGRGLAGGAIAGIIVGAVLGVLLVAGVIYIVIRRRKSKSSKLLAFSQDLSSQDERGFAPGSSLDKSTESNGQGGGGIAAITGITVEKSVDFSYEELAKATDDFSLANKIGEGGFGSVYYAELRGEKAAIKKMDMQATKEFLAEIKVLTRVHHLNLVRLIGYCVENSLFLVYEYIENGNLSQHLRGTGHDPLPWPSRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFHGKVADFGLTKLTEVGNSSLPTRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLYELISAKEAVVKTNRASAINESKGLVALFEDVLNQPDAKENLHKLVDPRLEENYPLDSVFKMAQLAKACTHENPQLRPSMRSIVVALMTLSSATEDWDVGSFYENQALVNLMSGR 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6479580 6484851 + Maker00008042 Lcy4g0538 630064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0538 604 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524(InterPro)
Lcy4g0538 604 ProSiteProfiles Protein kinase domain profile. 304 579 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0538 604 MobiDBLite consensus disorder prediction 253 275 - -
Lcy4g0538 604 FunFam LysM receptor kinase 2 283 374 - -
Lcy4g0538 604 CDD TM_EGFR-like 204 242 - -
Lcy4g0538 604 SUPERFAMILY Protein kinase-like (PK-like) 288 576 IPR011009 -
Lcy4g0538 604 Gene3D Phosphorylase Kinase; domain 1 290 374 - -
Lcy4g0538 604 Gene3D Transferase(Phosphotransferase) domain 1 375 595 - -
Lcy4g0538 604 FunFam PTI1-like tyrosine-protein kinase 3 375 590 - -
Lcy4g0538 604 Pfam LysM domain 97 141 IPR018392 -
Lcy4g0538 604 Pfam Protein kinase domain 306 573 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0538 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g0538 604 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 9 603 IPR044812 GO:0019199(InterPro)|GO:0045087(InterPro)
Lcy4g0538 604 CDD STKc_IRAK 310 573 - -
Lcy4g0538 604 SMART serkin_6 304 578 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0538 Lcy-Chr4:6479580 Lcy7g0150 Lcy-Chr7:1361085 1.38E-93 dispersed
Lcy5g0429 Lcy-Chr5:4454069 Lcy4g0538 Lcy-Chr4:6479580 8.34E-10 dispersed
Lcy8g0576 Lcy-Chr8:19645572 Lcy4g0538 Lcy-Chr4:6479580 1.66E-56 dispersed
Lcy4g0538 Lcy-Chr4:6479580 Lcy7g0396 Lcy-Chr7:3370972 9.87E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65848 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0538 K13429 - csv:101203576 986.097