Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0541 ATGCCCCTCCATAACTCCACCGGAAAAATTCAAGCAACCTCGCCGATCTGTAAATTCCCAGTGAAGAGTCGGAGAAATCTGATGGCGTTGAGGGTCACCATGACCTCCGGCGGAATGCCTTCGATACCGTCGTCGATATCGCCGCCGCCTGTCACTTTGCCGGTGAGAGATATCCCCGGCGGTTACGGTTGGCCGCTGTTCGGATCCATCGGCGACCGGCTGGATTACTTCTGGTTCCAAGGACCGGAGAAGTTCTTCAGAACTCGAATGGAGAAGAATCGAAGCACGGTTTTCCGTACGAATGTTCCTCCGTCGTTCCCTTTCATCTTCGCCGATCCGAAAGTGATTGCGGTTCTCGATTGCAAGTCGTTTGCGCATCTGTTCGACATGGAAATCGTCGAGAAGAAGAATGTTCTCGTCGGCGATTTCATGCCGAGCACCAGTTTCACCGGAAATATGAGAGTCTGTGCCTATTTGGATCCATCGGAATCTCAACACTCGAAGGTAAAAAACTTCATCATAGACGTTCTACGGCGGAGCTCGAAGATTTGGATTCCAGAGCTGGAATCCAACCTCTCGACGTTATGGGACAGCATCGAATCCGAAATCGCGAAGAACGCAAAACCCAGCTACCGAATCCCTCTCCAACAAGCCCTTTTCAATTTCTTCTCCAAAACCCTCGCCGGCGCCGACACTGCAAAGTCACCGGAAGTCGCCAACTCCGGCTACATCGACATCATCATCTGGCTCGCCCTCCAGCTCTCCCCCACCGTCCACCTCGGCGTTCTGCAACCCCTTGAAGAAATCTTCCTCCACTCCTTCCGATACCCCTTCTTCCCCGTCGCCGGCCGGTACCGGAGACTCTACGATTTCATCGAAAAACAAGGGGAAGAAGTGGTTCAGCGAGGCGTTTCCGATTTCGGATTGAAAAAAGAAGAAGTGATCCACAATCTACTCTTCACAATGGGATTCAACGCCTACGGTGGGTTCACTCTCTTCCTCCCGGTTCTCCTCGGCCGGATACTCAGCGACAAAACCGGATTACAACAGAGAATCATCGAGGAAGTCAGGGCGAAATCCGGGTCGGGTCTGACGTTCGAGTCGGTGAAGGAGATGGAGCTGGTTTACTCCGTGGTGTACGAGACGCTCCGGCTGGACCCGCCGGTTCCGTCGCAGTACGCGAGGGCGAGGAAAGATTTCAAGCTGAGTTCGCACGATTCGATGTTCAACGTGAAGAAGGGGGAGCTGCTTTGTGGGTACCAGCCGCTTGTGATGAGGGACCCGAGGGTGTTCGAGGAACCGGAGGCGTTTAAGCCGGAGCGGTTCAGAGGGGAGAAAGGGGCGGAGCTGCTGGACTATTTGTTCTGGTCGAACGGGCCGCAGACGGGGACGGCGGGCGACAAGAACAAGCAGTGCGCCGGGAAGGATTTGGTGGTGCTGACGGCGGTGGTGTTTGTGGCTTACATGTTTCGAAGGTATGATTTGATTGCGGCGGAGGGAGAATCGATTACAGCGCTTCAAAGGGCTAATTGA 1533 54.27 MPLHNSTGKIQATSPICKFPVKSRRNLMALRVTMTSGGMPSIPSSISPPPVTLPVRDIPGGYGWPLFGSIGDRLDYFWFQGPEKFFRTRMEKNRSTVFRTNVPPSFPFIFADPKVIAVLDCKSFAHLFDMEIVEKKNVLVGDFMPSTSFTGNMRVCAYLDPSESQHSKVKNFIIDVLRRSSKIWIPELESNLSTLWDSIESEIAKNAKPSYRIPLQQALFNFFSKTLAGADTAKSPEVANSGYIDIIIWLALQLSPTVHLGVLQPLEEIFLHSFRYPFFPVAGRYRRLYDFIEKQGEEVVQRGVSDFGLKKEEVIHNLLFTMGFNAYGGFTLFLPVLLGRILSDKTGLQQRIIEEVRAKSGSGLTFESVKEMELVYSVVYETLRLDPPVPSQYARARKDFKLSSHDSMFNVKKGELLCGYQPLVMRDPRVFEEPEAFKPERFRGEKGAELLDYLFWSNGPQTGTAGDKNKQCAGKDLVVLTAVVFVAYMFRRYDLIAAEGESITALQRAN 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6503127 6507638 + Maker00008068 Lcy4g0541 630067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0541 510 PANTHER CYTOCHROME P450 26 59 493 - GO:0016125(PANTHER)|GO:0016491(PANTHER)
Lcy4g0541 510 Pfam Cytochrome P450 346 501 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g0541 510 CDD CYP74 87 502 - -
Lcy4g0541 510 PRINTS E-class P450 group IV signature 372 388 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g0541 510 PRINTS E-class P450 group IV signature 425 443 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g0541 510 PRINTS E-class P450 group IV signature 409 423 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g0541 510 PRINTS E-class P450 group IV signature 472 490 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g0541 510 FunFam Allene oxide synthase, chloroplastic 53 509 - -
Lcy4g0541 510 Gene3D Cytochrome P450 53 509 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g0541 510 SUPERFAMILY Cytochrome P450 53 501 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1080 Lcy-Chr3:35547422 Lcy4g0541 Lcy-Chr4:6503127 2.80E-130 dispersed
Lcy3g1081 Lcy-Chr3:35565141 Lcy4g0541 Lcy-Chr4:6503127 9.70E-123 dispersed
Lcy4g0541 Lcy-Chr4:6503127 Lcy12g0469 Lcy-Chr12:5680285 6.12E-08 dispersed
Lcy4g0541 Lcy-Chr4:6503127 Lcy8g0966 Lcy-Chr8:34203358 5.76E-08 transposed
Lcy4g0541 Lcy-Chr4:6503127 Lcy3g1930 Lcy-Chr3:46486595 6.12E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0541 K10528 - csv:101223126 796.578