Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0547 ATGGACGCCGCCCCTTCCCCTCCGCCGCCCACCCGCCACTTCCCGGTCAACCTCAATTCCACCCTCCACGACTCTGATCCTCCTCCTCCTCCCCCTCCTCCGCCTCCTCCCCCCTCCTCCTACGAGATGAACTTCTTCGCCGCCGACGATAAATCCCGCGTTCTTCTCGCCAAACTCCCTGCCTCCGACAACCTCGACTTCAACGTTAACACGGGGTTGAATCTCTTGACGACGAATTCGAGTAGCGATCAATCGATGGTGGACGATGGAGTTTCTCCCAACCAAGAAGATAAAAGAGCCAAGAACGAGCGAGCAGTTCTTCAAGCTGAATTGGAGAGAATCAACGCGGAGAATCAACGGTTGAAGGAAATGTTAAATCAAGTGACGAGCAATTACCAAGCGCTGCAGATGCACTTCACGACGCTGATTCAGAACCAGAAGGCGGGCGACGCCGGCGACCCAATGGACGAAAAGGCCGGCGGCGGCGGCGGCGGAGGTCAAGAAAAGGTCCGGCACGGCGGCGGCGGAGGGAATAACAACAGTAATAAGCTGGTGCCGAGGCAGTTTATGGATCTTGGATTGGCGACGAATACGGACACGGATGAGCCGTCGATGTCGTCGTCGGAAGGGAGGAGCGGCGAGCGGTCGCGGTCGCCGGGAACCACCGGAGAAGTGGCGTCGTCGAAACGGCATAGCCCAGATCAGGGCTCGAATTGGGGTTCGAGTAAAGTCCCTAAATTCAGTTCTTCGTCTTCTTCTTCGGGTAAAGATGTGGATCAAACTGAAGCTACTATGAGAAAGGCCAGAGTCTCCGTTCGAGCCAGATCCGAAGCACCCATGATCACAGATGGATGCCAATGGAGAAAATACGGACAAAAAATGGCGAAGGGAAACCCTTGTCCTCGAGCTTACTACCGCTGCACCATGGCCGCCGGCTGCCCAGTTCGAAAACAAGTACAAAGATGTGCAGAAGACAAAACAATTCTGATAACAACCTACGAAGGCAACCACAACCACCCATTGCCGCCGGCCGCCATGGCAATGGCATCAACAACATCATCAGCGGCAAGAATGCTTCTATCAGGATCCATGTCAAGTGCCGATGGTTTAATGAACTCCAACTTTCTAGCAAGAACCCTACTGCCTTGCTCTTCAAGCATGGCCACAATCTCAGCCTCCGCCCCATTTCCAACCGTCACATTAGACCTAACACAAACCCCCAATCCCTTGTTCCAACGGCCCGCCGCCGGACACTTCCCGATCCCGTTCGCGGCCGGTCCGCCCCAAAGCTTTCCACAGATCTTCGGACATGCGTTGTACAATCAATCGAAATTCTCCGGCCTCCAAATGTCAAAGGACATGGAAGTACCGCCTCCTCCGCCGCAGAATCCATTGGCCGACACGTTGAGCGCGGCAAGTGCGGCGATCGCTTCCGACCCGAATTTCATAGCGGCGTTGGCAACGGCGATGACGTCGCTGATCGGCGGGTCTCATCATCAGAAGGAGAATAGTAATGGCAATAATAATGTGGATAACAATACAACTAGCAACTCCCAACAGTAA 1563 54.57 MDAAPSPPPPTRHFPVNLNSTLHDSDPPPPPPPPPPPPSSYEMNFFAADDKSRVLLAKLPASDNLDFNVNTGLNLLTTNSSSDQSMVDDGVSPNQEDKRAKNERAVLQAELERINAENQRLKEMLNQVTSNYQALQMHFTTLIQNQKAGDAGDPMDEKAGGGGGGGQEKVRHGGGGGNNNSNKLVPRQFMDLGLATNTDTDEPSMSSSEGRSGERSRSPGTTGEVASSKRHSPDQGSNWGSSKVPKFSSSSSSSGKDVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMSSADGLMNSNFLARTLLPCSSSMATISASAPFPTVTLDLTQTPNPLFQRPAAGHFPIPFAAGPPQSFPQIFGHALYNQSKFSGLQMSKDMEVPPPPPQNPLADTLSAASAAIASDPNFIAALATAMTSLIGGSHHQKENSNGNNNVDNNTTSNSQQ 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6562441 6565516 + Maker00008090 Lcy4g0547 630073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0547 520 MobiDBLite consensus disorder prediction 193 259 - -
Lcy4g0547 520 SMART WRKY_cls 281 341 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0547 520 MobiDBLite consensus disorder prediction 24 41 - -
Lcy4g0547 520 Gene3D WRKY domain 266 343 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0547 520 FunFam probable WRKY transcription factor 31 266 343 - -
Lcy4g0547 520 Pfam WRKY DNA -binding domain 283 340 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0547 520 Coils Coil 97 138 - -
Lcy4g0547 520 MobiDBLite consensus disorder prediction 77 100 - -
Lcy4g0547 520 MobiDBLite consensus disorder prediction 1 44 - -
Lcy4g0547 520 MobiDBLite consensus disorder prediction 496 520 - -
Lcy4g0547 520 MobiDBLite consensus disorder prediction 146 276 - -
Lcy4g0547 520 SUPERFAMILY Formin homology 2 domain (FH2 domain) 28 37 - -
Lcy4g0547 520 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 87 501 IPR044810 GO:0003700(InterPro)
Lcy4g0547 520 ProSiteProfiles WRKY domain profile. 276 342 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0547 520 MobiDBLite consensus disorder prediction 77 91 - -
Lcy4g0547 520 SUPERFAMILY WRKY DNA-binding domain 274 342 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0589 Lcy-Chr2:5035337 Lcy4g0547 Lcy-Chr4:6562441 7.39E-46 dispersed
Lcy4g0547 Lcy-Chr4:6562441 Lcy6g0540 Lcy-Chr6:5106307 5.28E-46 dispersed
Lcy1g0459 Lcy-Chr1:4019253 Lcy4g0547 Lcy-Chr4:6562441 4.40E-34 transposed
Lcy1g0458 Lcy-Chr1:4018317 Lcy4g0547 Lcy-Chr4:6562441 5.08E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19945 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0547 - - - 0.0