Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy4g0547 | ATGGACGCCGCCCCTTCCCCTCCGCCGCCCACCCGCCACTTCCCGGTCAACCTCAATTCCACCCTCCACGACTCTGATCCTCCTCCTCCTCCCCCTCCTCCGCCTCCTCCCCCCTCCTCCTACGAGATGAACTTCTTCGCCGCCGACGATAAATCCCGCGTTCTTCTCGCCAAACTCCCTGCCTCCGACAACCTCGACTTCAACGTTAACACGGGGTTGAATCTCTTGACGACGAATTCGAGTAGCGATCAATCGATGGTGGACGATGGAGTTTCTCCCAACCAAGAAGATAAAAGAGCCAAGAACGAGCGAGCAGTTCTTCAAGCTGAATTGGAGAGAATCAACGCGGAGAATCAACGGTTGAAGGAAATGTTAAATCAAGTGACGAGCAATTACCAAGCGCTGCAGATGCACTTCACGACGCTGATTCAGAACCAGAAGGCGGGCGACGCCGGCGACCCAATGGACGAAAAGGCCGGCGGCGGCGGCGGCGGAGGTCAAGAAAAGGTCCGGCACGGCGGCGGCGGAGGGAATAACAACAGTAATAAGCTGGTGCCGAGGCAGTTTATGGATCTTGGATTGGCGACGAATACGGACACGGATGAGCCGTCGATGTCGTCGTCGGAAGGGAGGAGCGGCGAGCGGTCGCGGTCGCCGGGAACCACCGGAGAAGTGGCGTCGTCGAAACGGCATAGCCCAGATCAGGGCTCGAATTGGGGTTCGAGTAAAGTCCCTAAATTCAGTTCTTCGTCTTCTTCTTCGGGTAAAGATGTGGATCAAACTGAAGCTACTATGAGAAAGGCCAGAGTCTCCGTTCGAGCCAGATCCGAAGCACCCATGATCACAGATGGATGCCAATGGAGAAAATACGGACAAAAAATGGCGAAGGGAAACCCTTGTCCTCGAGCTTACTACCGCTGCACCATGGCCGCCGGCTGCCCAGTTCGAAAACAAGTACAAAGATGTGCAGAAGACAAAACAATTCTGATAACAACCTACGAAGGCAACCACAACCACCCATTGCCGCCGGCCGCCATGGCAATGGCATCAACAACATCATCAGCGGCAAGAATGCTTCTATCAGGATCCATGTCAAGTGCCGATGGTTTAATGAACTCCAACTTTCTAGCAAGAACCCTACTGCCTTGCTCTTCAAGCATGGCCACAATCTCAGCCTCCGCCCCATTTCCAACCGTCACATTAGACCTAACACAAACCCCCAATCCCTTGTTCCAACGGCCCGCCGCCGGACACTTCCCGATCCCGTTCGCGGCCGGTCCGCCCCAAAGCTTTCCACAGATCTTCGGACATGCGTTGTACAATCAATCGAAATTCTCCGGCCTCCAAATGTCAAAGGACATGGAAGTACCGCCTCCTCCGCCGCAGAATCCATTGGCCGACACGTTGAGCGCGGCAAGTGCGGCGATCGCTTCCGACCCGAATTTCATAGCGGCGTTGGCAACGGCGATGACGTCGCTGATCGGCGGGTCTCATCATCAGAAGGAGAATAGTAATGGCAATAATAATGTGGATAACAATACAACTAGCAACTCCCAACAGTAA | 1563 | 54.57 | MDAAPSPPPPTRHFPVNLNSTLHDSDPPPPPPPPPPPPSSYEMNFFAADDKSRVLLAKLPASDNLDFNVNTGLNLLTTNSSSDQSMVDDGVSPNQEDKRAKNERAVLQAELERINAENQRLKEMLNQVTSNYQALQMHFTTLIQNQKAGDAGDPMDEKAGGGGGGGQEKVRHGGGGGNNNSNKLVPRQFMDLGLATNTDTDEPSMSSSEGRSGERSRSPGTTGEVASSKRHSPDQGSNWGSSKVPKFSSSSSSSGKDVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMSSADGLMNSNFLARTLLPCSSSMATISASAPFPTVTLDLTQTPNPLFQRPAAGHFPIPFAAGPPQSFPQIFGHALYNQSKFSGLQMSKDMEVPPPPPQNPLADTLSAASAAIASDPNFIAALATAMTSLIGGSHHQKENSNGNNNVDNNTTSNSQQ | 520 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 6562441 | 6565516 | + | Maker00008090 | Lcy4g0547 | 630073 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy4g0547 | 520 | MobiDBLite | consensus disorder prediction | 193 | 259 | - | - | |
Lcy4g0547 | 520 | SMART | WRKY_cls | 281 | 341 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy4g0547 | 520 | MobiDBLite | consensus disorder prediction | 24 | 41 | - | - | |
Lcy4g0547 | 520 | Gene3D | WRKY domain | 266 | 343 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy4g0547 | 520 | FunFam | probable WRKY transcription factor 31 | 266 | 343 | - | - | |
Lcy4g0547 | 520 | Pfam | WRKY DNA -binding domain | 283 | 340 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy4g0547 | 520 | Coils | Coil | 97 | 138 | - | - | |
Lcy4g0547 | 520 | MobiDBLite | consensus disorder prediction | 77 | 100 | - | - | |
Lcy4g0547 | 520 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Lcy4g0547 | 520 | MobiDBLite | consensus disorder prediction | 496 | 520 | - | - | |
Lcy4g0547 | 520 | MobiDBLite | consensus disorder prediction | 146 | 276 | - | - | |
Lcy4g0547 | 520 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 28 | 37 | - | - | |
Lcy4g0547 | 520 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 87 | 501 | IPR044810 | GO:0003700(InterPro) | |
Lcy4g0547 | 520 | ProSiteProfiles | WRKY domain profile. | 276 | 342 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy4g0547 | 520 | MobiDBLite | consensus disorder prediction | 77 | 91 | - | - | |
Lcy4g0547 | 520 | SUPERFAMILY | WRKY DNA-binding domain | 274 | 342 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g0589 | Lcy-Chr2:5035337 | Lcy4g0547 | Lcy-Chr4:6562441 | 7.39E-46 | dispersed | |
Lcy4g0547 | Lcy-Chr4:6562441 | Lcy6g0540 | Lcy-Chr6:5106307 | 5.28E-46 | dispersed | |
Lcy1g0459 | Lcy-Chr1:4019253 | Lcy4g0547 | Lcy-Chr4:6562441 | 4.40E-34 | transposed | |
Lcy1g0458 | Lcy-Chr1:4018317 | Lcy4g0547 | Lcy-Chr4:6562441 | 5.08E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19945 | None | None | None | None | Lcy | TF |
Pathway information
