Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0559 ATGAGAAACTTTGCTGCTCTGCTGCTGCTGCGTAGTTCGATATGGCTGTTCGTCACTGGTCCGATCTGGTGCCAGAAGCCTGCTGTCGTAAATATTGGTGCGGTTTTTACTTTCGATTCGGTTATCGGTAGAGCAGCAAAGTCCGCGATGCAAGCAGCAATCTCCGACATCAACGCCGACCCCAACATCTTGAATGGGATAAAGCTCAAATTCCTCATGGAGGACTCTAATTGCAGCGGCTTCTTGGGCTCCGTTAGAGAATTAAGATTGCATTGTGATTACCAGGTACTTGAAAAAGAAATTGTGGCCATCATTGGCCCACAATCCTCAGTGGTGGCTCATGTGATTTCTCAGATCGTTAATGGTCTACAAGTTCCTCAAGTTTCATACGGTGCCACCGACCCAACACTGTCGACTCTCCAGCTTCCATTTTTCGTCCGAACCACTTTAAGTGACTCGTACCAAATGGCCGCCATGGCTAACTTGATTGATTATTATGGCTGGAAAGAGGCCATCGCTATATTTTTGGATGATGACTATGGGAGAAATGGGATATCTTCTTTGGCTGATGAACTTGAGAAGAAAATGTGTCGTATTTCTCATGAATTCCCCTTGCCTTCTCTGCTTAATCTTACTAAGATCACTGAGATACTCAATAACTCTAAATTGCTTGGACCTCGTGTTTATGTCGTTCACGTAGGCCCTGATCCCCAATTAAGAATCTTCACCATCGCCCATAAACTTGGCATGCTTACCAGCAATTACGTTTGGTTCGCTACTGATTGGCTTGCTGCAACTCTAGATTCTTTCTCACCAATCAATCGTTCTTCACTTGATATACTTAATGGGGTAGTGGGGCTACGCCCTCATACTCCAGAGTCTAAAGGAAAGAGAAACTTGTGGGATCGGTTGAGCAAAATGCAGCCAACAGGTTTGGCCAATTCTGCGTTGAATGTTTATGGACTCTACGCTTATGATTCAGTATGGGTTGTGGCCAGGGCAGTCGATAAATTTCTCAAAGAAAATGGTAATATCACGTTTTCATCCTCAGGTAAAGTATTTGGCTCTAATGCAAGTGGAATTCAACTGGGAAGGCTCAAAGTGTTTGATGGCGGAAATGATCTGCTTAGAATTATAATGCAAACGAACTACACTGGTTTAAGTGGGCGAATTCAGTTTGGTGAAGATAGAAACATTATCAACGGTAGCTATGATGTGATTAACATTGACCAAAAGGGGATTCGTACAGTGGGTTATTGGTCTAATTCCACAGGATTCTCGGTTTCACCACCAGAAGATTTGACCTTGAAACAAGAGGATTACCCTTTAGATCAGAAACTTGGCAATGTAATTTGGCCTGGTGGAAGGTCGTCAGAACGACCGCGGGGTTGGGTGATTGCAGACGCTGGAAAACCCCTCAGAATCGCGTACCCGAAAAGAGCAAGCTTTGTTGATTTTGTTACTCAAGTGAACAACACCGATACGGTTCGAGGATACGTTATCGATATTTTCAAAGAAGCACTCAAGCTTATTCCATATGAGGTTCCTTACAGATTTGTGCCTTTTGGAGATGGCCGAGTCAATCCCAGTTATGATGAACTTGTTCAGTCGGTTGCAAACAATGTGTTTGATGCAGCGGTTGGGGACATTGCTATTGTCACCAACCGTACAAAGATTGTTGATTTTTCTCAACCATATACCACCACTGGGCTCATCATAGTTGCCCCGGTTAAAGATTCAAAATCAAGTGCTTGGGTGTTTCTCAGACCATTTACAGTGGAGATGTGGTGTGTAGTAGCAGCTTCCTTTGTGATCATTGGGGTCGTTATTTGGATGCTCGAGCACCGAATCAACGACCATTTTCGAGGTCCTCCAAAGAGGCAGATTATCACAATGTGTCTGTTCAGCATGTCAACTCTATTCAAGGCAAATCAAGAAGCAACAGTCAGCCCACTTTCACGACTGGTGATGTTGGTGTGGCTGTTCTTATTGTTGGTAATAACGTCAAGCTACACAGCAAGTTTGACATCAATCCTTACAATTCAGCAACTTTGGTCGCCAATAAGTGGAATGGATGACTTGGTTGCGAGTAATTTGCCGATAGGATATCAGGTAGGATCCTTTGCTTACGACTATCTGACACAGAGCCTTTTCGTACCACGTTCCAGACTGGTTGAGCTCGACTCGCCTGAAGATTACGAGAAGGCACTTCGGCTCGGTCCTAAAGGAGGAGGTGTGGCGGCCATCGTTGATGAACTTCCATATTTGGAGTTGTTTCTGTCTAAGACAAAGGAATTTGGAATCATTGGCCAACCTTTTACCAGAAGCGGATGGGGATTTGCTTTTCAGCGAGGATCTCGACTCGCAGTTGATATGTCAACTGCAATTTTGAGACTTTCTGAGGGCGGAAAGCTTCAAGAGATACACGACTTGTGGTTCTGTAAGTTGGGTTGTCCCGGGCAGCGAGGAGGAAAATCATCGCCAGACGAACTTCACTTGATCAGTTTCTGGGGTTTGTATTTACTTTGTGGGATCATTTCCTTGGCTGCACTTTTCGTGTTTCTTCTAAGACTAATTCGCCAGTATATCCGGTATCAACGACATCATCGTCGTTCGGAGGCAGTAACACCGTCCCCCATTTCAACCAACACCAGCTGTACTCAGACCATTCAAAGCTTTATACATTTTATTGACGAGAAGGAAGAAGCCATCAAAAGCTTCTTTCGAGCGTCACATTCACATGGTGCTCAAAATGGGGACCAAAACCAGAAACATTCACAAGCGGCAAAGGAGAAGACTGATTCAGAGGTACAGATGGGGAGCTCGGGTATGAATCGAGGATAG 2844 44.62 MRNFAALLLLRSSIWLFVTGPIWCQKPAVVNIGAVFTFDSVIGRAAKSAMQAAISDINADPNILNGIKLKFLMEDSNCSGFLGSVRELRLHCDYQVLEKEIVAIIGPQSSVVAHVISQIVNGLQVPQVSYGATDPTLSTLQLPFFVRTTLSDSYQMAAMANLIDYYGWKEAIAIFLDDDYGRNGISSLADELEKKMCRISHEFPLPSLLNLTKITEILNNSKLLGPRVYVVHVGPDPQLRIFTIAHKLGMLTSNYVWFATDWLAATLDSFSPINRSSLDILNGVVGLRPHTPESKGKRNLWDRLSKMQPTGLANSALNVYGLYAYDSVWVVARAVDKFLKENGNITFSSSGKVFGSNASGIQLGRLKVFDGGNDLLRIIMQTNYTGLSGRIQFGEDRNIINGSYDVINIDQKGIRTVGYWSNSTGFSVSPPEDLTLKQEDYPLDQKLGNVIWPGGRSSERPRGWVIADAGKPLRIAYPKRASFVDFVTQVNNTDTVRGYVIDIFKEALKLIPYEVPYRFVPFGDGRVNPSYDELVQSVANNVFDAAVGDIAIVTNRTKIVDFSQPYTTTGLIIVAPVKDSKSSAWVFLRPFTVEMWCVVAASFVIIGVVIWMLEHRINDHFRGPPKRQIITMCLFSMSTLFKANQEATVSPLSRLVMLVWLFLLLVITSSYTASLTSILTIQQLWSPISGMDDLVASNLPIGYQVGSFAYDYLTQSLFVPRSRLVELDSPEDYEKALRLGPKGGGVAAIVDELPYLELFLSKTKEFGIIGQPFTRSGWGFAFQRGSRLAVDMSTAILRLSEGGKLQEIHDLWFCKLGCPGQRGGKSSPDELHLISFWGLYLLCGIISLAALFVFLLRLIRQYIRYQRHHRRSEAVTPSPISTNTSCTQTIQSFIHFIDEKEEAIKSFFRASHSHGAQNGDQNQKHSQAAKEKTDSEVQMGSSGMNRG 947
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6845991 6870607 - Maker00007978 Lcy4g0559 630085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0559 947 FunFam Glutamate receptor 468 584 - -
Lcy4g0559 947 FunFam Glutamate receptor 710 817 - -
Lcy4g0559 947 Pfam Ligand-gated ion channel 814 845 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy4g0559 947 Gene3D - 762 820 - -
Lcy4g0559 947 Pfam Receptor family ligand binding region 46 410 IPR001828 -
Lcy4g0559 947 MobiDBLite consensus disorder prediction 913 947 - -
Lcy4g0559 947 SUPERFAMILY Periplasmic binding protein-like II 461 813 - -
Lcy4g0559 947 CDD PBP1_GABAb_receptor_plant 31 430 IPR044440 -
Lcy4g0559 947 Gene3D - 48 401 - -
Lcy4g0559 947 MobiDBLite consensus disorder prediction 933 947 - -
Lcy4g0559 947 Pfam Bacterial extracellular solute-binding proteins, family 3 486 592 IPR001638 -
Lcy4g0559 947 Gene3D - 466 583 - -
Lcy4g0559 947 Gene3D - 584 716 - -
Lcy4g0559 947 FunFam Glutamate receptor 151 308 - -
Lcy4g0559 947 PRINTS Metabotropic glutamate GPCR signature 136 155 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Lcy4g0559 947 PRINTS Metabotropic glutamate GPCR signature 155 171 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Lcy4g0559 947 PRINTS Metabotropic glutamate GPCR signature 43 58 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Lcy4g0559 947 PRINTS Metabotropic glutamate GPCR signature 58 77 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Lcy4g0559 947 PRINTS Metabotropic glutamate GPCR signature 171 188 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Lcy4g0559 947 SMART GluR_14 474 815 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy4g0559 947 PIRSF IGluLR_plant 1 942 IPR017103 -
Lcy4g0559 947 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 916 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Lcy4g0559 947 FunFam Glutamate receptor 584 714 - -
Lcy4g0559 947 Gene3D - 151 426 - -
Lcy4g0559 947 CDD GluR_Plant 471 813 - -
Lcy4g0559 947 SUPERFAMILY Periplasmic binding protein-like I 24 464 IPR028082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0559 Lcy-Chr4:6845991 Lcy8g1444 Lcy-Chr8:41101731 6.31e-310 dispersed
Lcy4g0559 Lcy-Chr4:6845991 Lcy8g1443 Lcy-Chr8:41083633 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0559 K05387 - csv:101203158 1519.6