Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy4g0559 | ATGAGAAACTTTGCTGCTCTGCTGCTGCTGCGTAGTTCGATATGGCTGTTCGTCACTGGTCCGATCTGGTGCCAGAAGCCTGCTGTCGTAAATATTGGTGCGGTTTTTACTTTCGATTCGGTTATCGGTAGAGCAGCAAAGTCCGCGATGCAAGCAGCAATCTCCGACATCAACGCCGACCCCAACATCTTGAATGGGATAAAGCTCAAATTCCTCATGGAGGACTCTAATTGCAGCGGCTTCTTGGGCTCCGTTAGAGAATTAAGATTGCATTGTGATTACCAGGTACTTGAAAAAGAAATTGTGGCCATCATTGGCCCACAATCCTCAGTGGTGGCTCATGTGATTTCTCAGATCGTTAATGGTCTACAAGTTCCTCAAGTTTCATACGGTGCCACCGACCCAACACTGTCGACTCTCCAGCTTCCATTTTTCGTCCGAACCACTTTAAGTGACTCGTACCAAATGGCCGCCATGGCTAACTTGATTGATTATTATGGCTGGAAAGAGGCCATCGCTATATTTTTGGATGATGACTATGGGAGAAATGGGATATCTTCTTTGGCTGATGAACTTGAGAAGAAAATGTGTCGTATTTCTCATGAATTCCCCTTGCCTTCTCTGCTTAATCTTACTAAGATCACTGAGATACTCAATAACTCTAAATTGCTTGGACCTCGTGTTTATGTCGTTCACGTAGGCCCTGATCCCCAATTAAGAATCTTCACCATCGCCCATAAACTTGGCATGCTTACCAGCAATTACGTTTGGTTCGCTACTGATTGGCTTGCTGCAACTCTAGATTCTTTCTCACCAATCAATCGTTCTTCACTTGATATACTTAATGGGGTAGTGGGGCTACGCCCTCATACTCCAGAGTCTAAAGGAAAGAGAAACTTGTGGGATCGGTTGAGCAAAATGCAGCCAACAGGTTTGGCCAATTCTGCGTTGAATGTTTATGGACTCTACGCTTATGATTCAGTATGGGTTGTGGCCAGGGCAGTCGATAAATTTCTCAAAGAAAATGGTAATATCACGTTTTCATCCTCAGGTAAAGTATTTGGCTCTAATGCAAGTGGAATTCAACTGGGAAGGCTCAAAGTGTTTGATGGCGGAAATGATCTGCTTAGAATTATAATGCAAACGAACTACACTGGTTTAAGTGGGCGAATTCAGTTTGGTGAAGATAGAAACATTATCAACGGTAGCTATGATGTGATTAACATTGACCAAAAGGGGATTCGTACAGTGGGTTATTGGTCTAATTCCACAGGATTCTCGGTTTCACCACCAGAAGATTTGACCTTGAAACAAGAGGATTACCCTTTAGATCAGAAACTTGGCAATGTAATTTGGCCTGGTGGAAGGTCGTCAGAACGACCGCGGGGTTGGGTGATTGCAGACGCTGGAAAACCCCTCAGAATCGCGTACCCGAAAAGAGCAAGCTTTGTTGATTTTGTTACTCAAGTGAACAACACCGATACGGTTCGAGGATACGTTATCGATATTTTCAAAGAAGCACTCAAGCTTATTCCATATGAGGTTCCTTACAGATTTGTGCCTTTTGGAGATGGCCGAGTCAATCCCAGTTATGATGAACTTGTTCAGTCGGTTGCAAACAATGTGTTTGATGCAGCGGTTGGGGACATTGCTATTGTCACCAACCGTACAAAGATTGTTGATTTTTCTCAACCATATACCACCACTGGGCTCATCATAGTTGCCCCGGTTAAAGATTCAAAATCAAGTGCTTGGGTGTTTCTCAGACCATTTACAGTGGAGATGTGGTGTGTAGTAGCAGCTTCCTTTGTGATCATTGGGGTCGTTATTTGGATGCTCGAGCACCGAATCAACGACCATTTTCGAGGTCCTCCAAAGAGGCAGATTATCACAATGTGTCTGTTCAGCATGTCAACTCTATTCAAGGCAAATCAAGAAGCAACAGTCAGCCCACTTTCACGACTGGTGATGTTGGTGTGGCTGTTCTTATTGTTGGTAATAACGTCAAGCTACACAGCAAGTTTGACATCAATCCTTACAATTCAGCAACTTTGGTCGCCAATAAGTGGAATGGATGACTTGGTTGCGAGTAATTTGCCGATAGGATATCAGGTAGGATCCTTTGCTTACGACTATCTGACACAGAGCCTTTTCGTACCACGTTCCAGACTGGTTGAGCTCGACTCGCCTGAAGATTACGAGAAGGCACTTCGGCTCGGTCCTAAAGGAGGAGGTGTGGCGGCCATCGTTGATGAACTTCCATATTTGGAGTTGTTTCTGTCTAAGACAAAGGAATTTGGAATCATTGGCCAACCTTTTACCAGAAGCGGATGGGGATTTGCTTTTCAGCGAGGATCTCGACTCGCAGTTGATATGTCAACTGCAATTTTGAGACTTTCTGAGGGCGGAAAGCTTCAAGAGATACACGACTTGTGGTTCTGTAAGTTGGGTTGTCCCGGGCAGCGAGGAGGAAAATCATCGCCAGACGAACTTCACTTGATCAGTTTCTGGGGTTTGTATTTACTTTGTGGGATCATTTCCTTGGCTGCACTTTTCGTGTTTCTTCTAAGACTAATTCGCCAGTATATCCGGTATCAACGACATCATCGTCGTTCGGAGGCAGTAACACCGTCCCCCATTTCAACCAACACCAGCTGTACTCAGACCATTCAAAGCTTTATACATTTTATTGACGAGAAGGAAGAAGCCATCAAAAGCTTCTTTCGAGCGTCACATTCACATGGTGCTCAAAATGGGGACCAAAACCAGAAACATTCACAAGCGGCAAAGGAGAAGACTGATTCAGAGGTACAGATGGGGAGCTCGGGTATGAATCGAGGATAG | 2844 | 44.62 | MRNFAALLLLRSSIWLFVTGPIWCQKPAVVNIGAVFTFDSVIGRAAKSAMQAAISDINADPNILNGIKLKFLMEDSNCSGFLGSVRELRLHCDYQVLEKEIVAIIGPQSSVVAHVISQIVNGLQVPQVSYGATDPTLSTLQLPFFVRTTLSDSYQMAAMANLIDYYGWKEAIAIFLDDDYGRNGISSLADELEKKMCRISHEFPLPSLLNLTKITEILNNSKLLGPRVYVVHVGPDPQLRIFTIAHKLGMLTSNYVWFATDWLAATLDSFSPINRSSLDILNGVVGLRPHTPESKGKRNLWDRLSKMQPTGLANSALNVYGLYAYDSVWVVARAVDKFLKENGNITFSSSGKVFGSNASGIQLGRLKVFDGGNDLLRIIMQTNYTGLSGRIQFGEDRNIINGSYDVINIDQKGIRTVGYWSNSTGFSVSPPEDLTLKQEDYPLDQKLGNVIWPGGRSSERPRGWVIADAGKPLRIAYPKRASFVDFVTQVNNTDTVRGYVIDIFKEALKLIPYEVPYRFVPFGDGRVNPSYDELVQSVANNVFDAAVGDIAIVTNRTKIVDFSQPYTTTGLIIVAPVKDSKSSAWVFLRPFTVEMWCVVAASFVIIGVVIWMLEHRINDHFRGPPKRQIITMCLFSMSTLFKANQEATVSPLSRLVMLVWLFLLLVITSSYTASLTSILTIQQLWSPISGMDDLVASNLPIGYQVGSFAYDYLTQSLFVPRSRLVELDSPEDYEKALRLGPKGGGVAAIVDELPYLELFLSKTKEFGIIGQPFTRSGWGFAFQRGSRLAVDMSTAILRLSEGGKLQEIHDLWFCKLGCPGQRGGKSSPDELHLISFWGLYLLCGIISLAALFVFLLRLIRQYIRYQRHHRRSEAVTPSPISTNTSCTQTIQSFIHFIDEKEEAIKSFFRASHSHGAQNGDQNQKHSQAAKEKTDSEVQMGSSGMNRG | 947 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 6845991 | 6870607 | - | Maker00007978 | Lcy4g0559 | 630085 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy4g0559 | 947 | FunFam | Glutamate receptor | 468 | 584 | - | - | |
Lcy4g0559 | 947 | FunFam | Glutamate receptor | 710 | 817 | - | - | |
Lcy4g0559 | 947 | Pfam | Ligand-gated ion channel | 814 | 845 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Lcy4g0559 | 947 | Gene3D | - | 762 | 820 | - | - | |
Lcy4g0559 | 947 | Pfam | Receptor family ligand binding region | 46 | 410 | IPR001828 | - | |
Lcy4g0559 | 947 | MobiDBLite | consensus disorder prediction | 913 | 947 | - | - | |
Lcy4g0559 | 947 | SUPERFAMILY | Periplasmic binding protein-like II | 461 | 813 | - | - | |
Lcy4g0559 | 947 | CDD | PBP1_GABAb_receptor_plant | 31 | 430 | IPR044440 | - | |
Lcy4g0559 | 947 | Gene3D | - | 48 | 401 | - | - | |
Lcy4g0559 | 947 | MobiDBLite | consensus disorder prediction | 933 | 947 | - | - | |
Lcy4g0559 | 947 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 486 | 592 | IPR001638 | - | |
Lcy4g0559 | 947 | Gene3D | - | 466 | 583 | - | - | |
Lcy4g0559 | 947 | Gene3D | - | 584 | 716 | - | - | |
Lcy4g0559 | 947 | FunFam | Glutamate receptor | 151 | 308 | - | - | |
Lcy4g0559 | 947 | PRINTS | Metabotropic glutamate GPCR signature | 136 | 155 | IPR000337 | GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro) | |
Lcy4g0559 | 947 | PRINTS | Metabotropic glutamate GPCR signature | 155 | 171 | IPR000337 | GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro) | |
Lcy4g0559 | 947 | PRINTS | Metabotropic glutamate GPCR signature | 43 | 58 | IPR000337 | GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro) | |
Lcy4g0559 | 947 | PRINTS | Metabotropic glutamate GPCR signature | 58 | 77 | IPR000337 | GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro) | |
Lcy4g0559 | 947 | PRINTS | Metabotropic glutamate GPCR signature | 171 | 188 | IPR000337 | GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro) | |
Lcy4g0559 | 947 | SMART | GluR_14 | 474 | 815 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Lcy4g0559 | 947 | PIRSF | IGluLR_plant | 1 | 942 | IPR017103 | - | |
Lcy4g0559 | 947 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 30 | 916 | IPR015683 | GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER) | |
Lcy4g0559 | 947 | FunFam | Glutamate receptor | 584 | 714 | - | - | |
Lcy4g0559 | 947 | Gene3D | - | 151 | 426 | - | - | |
Lcy4g0559 | 947 | CDD | GluR_Plant | 471 | 813 | - | - | |
Lcy4g0559 | 947 | SUPERFAMILY | Periplasmic binding protein-like I | 24 | 464 | IPR028082 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy4g0559 | Lcy-Chr4:6845991 | Lcy8g1444 | Lcy-Chr8:41101731 | 6.31e-310 | dispersed | |
Lcy4g0559 | Lcy-Chr4:6845991 | Lcy8g1443 | Lcy-Chr8:41083633 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy4g0559 | K05387 | - | csv:101203158 | 1519.6 |