Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0564 ATGCCAGCCGGAATGATGATTCCAGCCAGAAACACGCCGCCGATGATCGGAAGGAATGGAAATGTCGGCATCTTTGGCTCTCCGGCCAGCCTCGTTCTTGGTCAGGGAAATATGATGGAAGGGGGGCAGCTACATGCATTAGAAATGGCACAAAACGCTTTGCCAGAAAGCGATTATGGACGAATGAGAGAAGCAGAAGACTTTGACAGTGCAACAAAATCAAGCAGCGAGAACCACGAGGTTGCTTCTGGTGACGACCAAGACCTTCAACGCCCCAAAAAGAAGCGTTACCACCGCCACACTCAGCACCAGATCCAACAAATGGAAGCGTTCTTCAAGGAATGTCCTCACCCAGATGACAAGCAAAGGAAGGAGCTGAGCAGGGAGTTGGGATTAGAGCCATTGCAAGTCAAATTTTGGTTCCAAAACAAGCGAACTCAGATGAAGACTCATCACGAGCGACATGAAAACACCCAGCTGAGAACAGAAAATGAGAAGCTTCGAGCCGATAATATGAGGTACAGAGAAGCTCTCAGTAATGCCACGTGTCCCAATTGTGGAGGTCCGACCGCCATTGGAGAGATGTCCTTTGATGAACATCATCTCAGGCTTGAAAATGCCCGCTTGAGAGAAGAGATCGATCGCATTTCAGCCATAGCAGCAAAATACGTAGGAAAGCCAGTTTCAAACTACCCTCTTCTTTCCCCGCCAATTCCTTCACGTCCTCTAGAGCTCGGAATGGGCAGCTATGGAGGCCACGAGCCAGGCCTCGGGTCAGGCGGGGACATGTACGGGGCGGCGGACCTTCTCAGGACGATAAGCGCGCCATCAGAGGCCGACAAGCCCGTAATCATCGAGCTTGCGGTTGCAGCCATGGAGGAACTGGTCCGAATGGCTCAGATGGGCGAGCCATTGTGGATGACGGCCCTTGATGGCTCAACGGCTGTGCTGAATGAAGATGAATACGTTAGAACCTTTCCTAGAGGAATTGGACCTAAGCCCTCTGGGTTTAGCTGTGAAGCTTCTCGTGCTACTGCCGTTGTTATTATGAACCATATTAGCCTCGTTGAGATGCTGATGGATGTGAATCAGTGGTCAACCATATTCACTGGGATTGTCTCAAGAGCTATGACATTAGAAGTTTTGTCAACGGGCGTTGCTGGAAACTACAACGGAGCATTACAAGTGATGACATCCGAATTGCAAGTGCCTTCGCCCCTCGTTCCGACAAGGGAGAGCTATTTCGTAAGGTACTGTAAACAACATGGAGAGGGAACTTGGGCTGTGGTCGACGTGTCGTTGGATAATTTACGCCCTGCTCCTGCACTTAGATGCAGAAGAAGGCCTTCCGGCTGTTTAATCCAAGAAATGCCTAATGGCTATTCTAAGGTTACGTGGGTTGAGCATGTTGAGGTGGATGATCGCGGGGTCCACAGTTTGTACAATCAGCTTGTTAGCTCTGGTCAAGCGTTCGGCGCAAAGCGTTGGATTGCCACGTTGGATCGTCAGTGTGAACGGCTCGCCAGCGCCATGGCCACAAGTATTCCGACCGGCGATGCTGGTGTGATAACGAATCAAGAAGGAAGAAAGAGCATGTTGAAGCTGGCAGAGAGAATGGTGATGAGCTTTTGCGGCGGCGTGAGCGCGTCGACCACACACACGTGGACAACACTGTCGGGAACGGGAGCTGATGACGTCAGAGTTATGACACGTAAGAGCGTTGACGACCCTGGCAGACCACCTGGCATTGTCCTCAGCGCCGCCACTTCCTTCTGGCTTCCTGTTCCTCCTAACAGAGTCTTCCATTTCCTCAGAGATGAAAATTCTCGTAATGAGTGGGATATTCTTTCCAATGGTGGAGTTGTTCAAGAAATGGCTCACATTGCCAATGGCCGCGACACTGGCAACTCTGTCTCATTGCTACGAGTAAACAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGCAGCACAGATCAAACAGCCTCGTTTGTGATCTACGCGCCGGTGGATATTGTGGCCATCAACGTGGTTCTTAACGGCGGAGATCCCGATTATGTCGCCCTTCTCCCCTCTGGATTCGCCATTCTTCCCGACGGAACCGCCGCACCCGGCGGCGGCGCTAATGGCGTGGGCGAACATGGCTCCGGCGGGTCGCTTTTAACGGTTGCATTTCAGATTTTGGTTGACTCGGTTCCCACAGCAAAGCTTTCTCTTGGGTCAGTTGCAACGGTCAACAATCTCATTGCCTGTACTGTCGAGAGGATCAAAGCCTCCTTGTCGTGTGAGAATCCATGA 2307 51.19 MPAGMMIPARNTPPMIGRNGNVGIFGSPASLVLGQGNMMEGGQLHALEMAQNALPESDYGRMREAEDFDSATKSSSENHEVASGDDQDLQRPKKKRYHRHTQHQIQQMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTHHERHENTQLRTENEKLRADNMRYREALSNATCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVSNYPLLSPPIPSRPLELGMGSYGGHEPGLGSGGDMYGAADLLRTISAPSEADKPVIIELAVAAMEELVRMAQMGEPLWMTALDGSTAVLNEDEYVRTFPRGIGPKPSGFSCEASRATAVVIMNHISLVEMLMDVNQWSTIFTGIVSRAMTLEVLSTGVAGNYNGALQVMTSELQVPSPLVPTRESYFVRYCKQHGEGTWAVVDVSLDNLRPAPALRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHSLYNQLVSSGQAFGAKRWIATLDRQCERLASAMATSIPTGDAGVITNQEGRKSMLKLAERMVMSFCGGVSASTTHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPNRVFHFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNSVSLLRVNSANSSQSNMLILQESSTDQTASFVIYAPVDIVAINVVLNGGDPDYVALLPSGFAILPDGTAAPGGGANGVGEHGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCENP 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6910018 6917861 + Maker00008047 Lcy4g0564 630090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0564 768 ProSiteProfiles 'Homeobox' domain profile. 91 151 IPR001356 GO:0003677(InterPro)
Lcy4g0564 768 MobiDBLite consensus disorder prediction 64 103 - -
Lcy4g0564 768 SUPERFAMILY Homeodomain-like 81 150 IPR009057 -
Lcy4g0564 768 SMART START_1 286 506 IPR002913 GO:0008289(InterPro)
Lcy4g0564 768 ProSiteProfiles START domain profile. 277 509 IPR002913 GO:0008289(InterPro)
Lcy4g0564 768 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 77 766 IPR042160 -
Lcy4g0564 768 CDD START_ArGLABRA2_like 281 505 - -
Lcy4g0564 768 FunFam Homeobox-leucine zipper protein HDG1 80 167 - -
Lcy4g0564 768 Pfam Homeodomain 94 149 IPR001356 GO:0003677(InterPro)
Lcy4g0564 768 SMART HOX_1 92 155 IPR001356 GO:0003677(InterPro)
Lcy4g0564 768 Gene3D - 317 504 IPR023393 -
Lcy4g0564 768 ProSitePatterns 'Homeobox' domain signature. 126 149 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy4g0564 768 MobiDBLite consensus disorder prediction 64 92 - -
Lcy4g0564 768 Coils Coil 157 177 - -
Lcy4g0564 768 Gene3D - 67 150 - -
Lcy4g0564 768 SUPERFAMILY Bet v1-like 525 760 - -
Lcy4g0564 768 SUPERFAMILY Bet v1-like 279 508 - -
Lcy4g0564 768 Pfam START domain 287 506 IPR002913 GO:0008289(InterPro)
Lcy4g0564 768 CDD homeodomain 94 152 IPR001356 GO:0003677(InterPro)
Lcy4g0564 768 FunFam Homeobox-leucine zipper protein GLABRA 2 286 505 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2124 Lcy-Chr3:48181984 Lcy4g0564 Lcy-Chr4:6910018 1.32E-151 dispersed
Lcy4g0564 Lcy-Chr4:6910018 Lcy6g0182 Lcy-Chr6:1654579 1.39E-233 dispersed
Lcy12g0264 Lcy-Chr12:3214956 Lcy4g0564 Lcy-Chr4:6910018 7.18E-181 transposed
Lcy12g1968 Lcy-Chr12:41033142 Lcy4g0564 Lcy-Chr4:6910018 3.10E-207 transposed
Lcy5g2591 Lcy-Chr5:48565640 Lcy4g0564 Lcy-Chr4:6910018 4.19E-151 transposed
Lcy1g0431 Lcy-Chr1:3811227 Lcy4g0564 Lcy-Chr4:6910018 0 wgd
Lcy4g0564 Lcy-Chr4:6910018 Lcy5g2008 Lcy-Chr5:43070878 5.99E-299 wgd
Lcy4g0564 Lcy-Chr4:6910018 Lcy8g1446 Lcy-Chr8:41124241 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19947 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0564 K09338 - csv:101219415 1385.16