Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy4g0566 | ATGCTTGTGTGCGGAGAGAGGTCTATTTTTCTGTGTTTTTGTCGAGTTTTGAGCAGCTTAATTGAGAGCGCACAATATATTTGCTGGTTACCTGTGTTCTACTCCGGACAGCTAAGTTTCATGTCTGAATTCAACGTGCAGATTCCATCTGCTTTTGACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCCGGGGCAAAAGAGTATGTTCATGTGCGCATACAGCAACGTAACGGGAGAAAAAGTCTGACAACTGTCCAAGGATTGAAAAAAGAATTTAGTTATAACAAGATACTTAAGGATCTGAAGAAGGAATTCTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCTACCTTCCTTGTGCAGGTAACGATTGAGTATATAGTTGAGATGAGAGCTGGCATTGTGAAGAAGGAAAATATCAAGATTCACGGTTTCTAA | 492 | 41.87 | MLVCGERSIFLCFCRVLSSLIESAQYICWLPVFYSGQLSFMSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQVTIEYIVEMRAGIVKKENIKIHGF | 163 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 6935324 | 6937415 | - | Maker00007980 | Lcy4g0566 | 630092 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy4g0566 | 163 | FunFam | Eukaryotic translation initiation factor SUI1 | 42 | 163 | - | - | |
| Lcy4g0566 | 163 | NCBIfam | translation initiation factor SUI1 | 46 | 163 | IPR005874 | GO:0003743(InterPro) | |
| Lcy4g0566 | 163 | SUPERFAMILY | eIF1-like | 38 | 142 | IPR036877 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
| Lcy4g0566 | 163 | CDD | eIF1_SUI1 | 69 | 162 | IPR005874 | GO:0003743(InterPro) | |
| Lcy4g0566 | 163 | ProSiteProfiles | Translation initiation factor SUI1 family profile. | 71 | 141 | IPR001950 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
| Lcy4g0566 | 163 | Gene3D | - | 35 | 163 | - | - | |
| Lcy4g0566 | 163 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 | 41 | 163 | - | GO:0003723(PANTHER) | |
| Lcy4g0566 | 163 | Pfam | Translation initiation factor SUI1 | 68 | 140 | IPR001950 | GO:0003743(InterPro)|GO:0006413(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy4g0566 | Lcy-Chr4:6935324 | Lcy9g1188 | Lcy-Chr9:36284207 | 6.59E-57 | dispersed | |
| Lcy4g0566 | Lcy-Chr4:6935324 | Lcy4g0567 | Lcy-Chr4:6939844 | 1.65E-83 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy4g0566 | K03113 | - | csv:101219651 | 220.32 |