Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0567 ATGCCAATAATTTCTCTCTGCCTTATAAACTTCATTGACTTGAAACCTTGCCGTTTCAGGTCTCTTCGTCTCCGGATTCACAGCTTTTTCTCCCGAGCAAATATCTTATTTGCTGGTTGGTTACCTGTGTTCTACTCCGGACAGCCAAGTTTCATGTCTGAATTCAACGTGCAGATTCCATCTGCTTTTGACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCCGGGGCAAAAGAGTATGTTCATGTGCGCATACAGCAACGTAACGGGAGAAAAAGCCTGACAACTGTCCAAGGATTGAAGAAGGAATTTAGTTATAACAAGATACTCAAGGATCTGAAGAAGGAATTCTGCTGTAATGGCACTGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCTACCTTCCTTGTGCAGGCTGGCATTGTGAAGAAGGAGAACATCAAGATTCACGGTTTCTGA 495 44.04 MPIISLCLINFIDLKPCRFRSLRLRIHSFFSRANILFAGWLPVFYSGQPSFMSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6939844 6942557 - Maker00008073 Lcy4g0567 630093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0567 164 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 52 164 - GO:0003723(PANTHER)
Lcy4g0567 164 SUPERFAMILY eIF1-like 49 164 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy4g0567 164 ProSiteProfiles Translation initiation factor SUI1 family profile. 82 152 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy4g0567 164 Gene3D - 46 164 - -
Lcy4g0567 164 NCBIfam translation initiation factor SUI1 57 164 IPR005874 GO:0003743(InterPro)
Lcy4g0567 164 Pfam Translation initiation factor SUI1 79 153 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy4g0567 164 CDD eIF1_SUI1 80 163 IPR005874 GO:0003743(InterPro)
Lcy4g0567 164 FunFam Eukaryotic translation initiation factor SUI1 53 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0567 Lcy-Chr4:6939844 Lcy9g1188 Lcy-Chr9:36284207 5.98E-58 dispersed
Lcy4g0566 Lcy-Chr4:6935324 Lcy4g0567 Lcy-Chr4:6939844 1.65E-83 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0567 K03113 - csv:101219651 228.409