Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0571 ATGGAGGACCTCGCTCTGCTGATCGAGACCCTTGGCACCCAGAGTAACAGGCCCGGGCTGCCTATGGTGGCTCAGGCTATTTTATCTAGCCAACCTCGGCAATGGGTCGAGGCCGAGGAGGTCTCTAGGTTTAGTTGTTGGAAATTAAAAACAATGGAGCTCTCTCGTTGTTGTCTTGTCTTTCTAATCCTATGTCTTCTAGGAATTGCTAGCTCAAGCCAAGCTCAGCTCGAGCTTGGCTTCTATGCAAAGAGCTGCCCTCGCGCCGAGAAAATCATCCACGACTACGTCTACGACAAGATTCCCAAAGTTCCAACGCTGGCCGCTGCCTTCATTAGAATGCATTTCCATGATTGCTTCGTTCGGGGTTGTGACGCGTCTCTGCTTCTGAATTCGACTACCGGCAACCCAAGCGAGAAGGCATCTCCGCCAAATCTAACACTGAGAGGCTTCGACTTCCTCGATAAAATCAAGAAACTTTTGGAAGCTGAGTGCCCTGGAATCGTCTCTTGCGCCGACATTCTTTCGCTGGTTGCAAGAGACTCCATCGTTGCCATTGGCGGTCCATTCTGGAGAGTTCCAACTGGAAGAAGAGACGGTCTGATCTCAAGATCCTCCGAAGCTTTGGCCAACATTCCTCCACCGTTCGGCAACTTGTCCACTCTCCAACGACTTTTCGCCAACCAAGGCCTTGATCTCAAAGACTTGGTTTTGCTATCCGGAGCTCACACGATCGGAATCTCCCACTGCTCCTCGTTCAGAAATCGTCTATACAACTTCACTGGAAAGGGAGACCAAGACCCATCACTCGACAGCGAATACGCCGCTAATCTGAAGGCAAGGAAATGCAAAAGCATAAGCGCCAATGGGATCGTGGAAATGGACCCTGGCAGTTTCAGGACCTTCGATCTCAGCTACTACTCTCTTCTCCTCAAGCGACGAGGTCTCTTCCAGTCCGACGCGGCTCTGACCACCAGCCCAGTCACCAAGGCCTTCGTCACTGACCTGCTCACTGGCTCGGTCAAGAATTTCTTTGCCGAGTTCGGGTTGGCCATGGAGAAGATGGGTCGGATCGGAGTCAAGACTGGCGCTGAGGGCGAGATTCGCAAGCATTGTGCTGTTGTCAATGGCTGA 1134 52.03 MEDLALLIETLGTQSNRPGLPMVAQAILSSQPRQWVEAEEVSRFSCWKLKTMELSRCCLVFLILCLLGIASSSQAQLELGFYAKSCPRAEKIIHDYVYDKIPKVPTLAAAFIRMHFHDCFVRGCDASLLLNSTTGNPSEKASPPNLTLRGFDFLDKIKKLLEAECPGIVSCADILSLVARDSIVAIGGPFWRVPTGRRDGLISRSSEALANIPPPFGNLSTLQRLFANQGLDLKDLVLLSGAHTIGISHCSSFRNRLYNFTGKGDQDPSLDSEYAANLKARKCKSISANGIVEMDPGSFRTFDLSYYSLLLKRRGLFQSDAALTTSPVTKAFVTDLLTGSVKNFFAEFGLAMEKMGRIGVKTGAEGEIRKHCAVVNG 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6973599 6979873 + Maker00007983 Lcy4g0571 630097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0571 377 CDD secretory_peroxidase 76 375 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy4g0571 377 Gene3D - 80 376 - -
Lcy4g0571 377 ProSitePatterns Peroxidases active site signature. 108 119 IPR019794 GO:0004601(InterPro)
Lcy4g0571 377 PRINTS Plant peroxidase signature 187 202 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0571 377 PRINTS Plant peroxidase signature 350 363 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0571 377 PRINTS Plant peroxidase signature 234 246 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0571 377 PRINTS Plant peroxidase signature 293 308 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0571 377 PRINTS Plant peroxidase signature 110 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0571 377 PRINTS Plant peroxidase signature 86 105 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0571 377 PRINTS Plant peroxidase signature 149 162 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0571 377 PRINTS Plant peroxidase signature 168 178 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0571 377 PRINTS Plant peroxidase signature 309 326 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0571 377 ProSiteProfiles Plant heme peroxidase family profile. 76 376 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0571 377 PANTHER PEROXIDASE 25-RELATED 66 372 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Lcy4g0571 377 SUPERFAMILY Heme-dependent peroxidases 76 376 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0571 377 PRINTS Haem peroxidase superfamily signature 295 310 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0571 377 PRINTS Haem peroxidase superfamily signature 169 186 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0571 377 PRINTS Haem peroxidase superfamily signature 235 250 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0571 377 PRINTS Haem peroxidase superfamily signature 187 199 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0571 377 PRINTS Haem peroxidase superfamily signature 108 122 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0571 377 FunFam Peroxidase 80 223 - -
Lcy4g0571 377 FunFam Peroxidase 213 355 - -
Lcy4g0571 377 Gene3D Peroxidase, domain 2 213 355 - -
Lcy4g0571 377 Pfam Peroxidase 99 335 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0571 377 ProSitePatterns Peroxidases proximal heme-ligand signature. 235 245 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0212 Lcy-Chr13:2200480 Lcy4g0571 Lcy-Chr4:6973599 4.50E-100 dispersed
Lcy4g0571 Lcy-Chr4:6973599 Lcy8g1452 Lcy-Chr8:41193682 2.47E-157 dispersed
Lcy4g0570 Lcy-Chr4:6967612 Lcy4g0571 Lcy-Chr4:6973599 1.31E-122 tandem
Lcy4g0571 Lcy-Chr4:6973599 Lcy4g0572 Lcy-Chr4:6985052 9.17E-203 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0571 K00430 - csv:101213629 476.092