Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0572 ATGGAGCTCTCTCGTTGTCTTGTCTTTCTACTTGTATGTCTTTTGGGACTTGCAAGCTCAAGCCAAGCTCAGCTGGAGCTAGGGTTCTATGCAAAGAGCTGCCCTCGCGCCGAGAAAATCATCTACGATTTCGTCTACAAGAACATTCCCAAGGCTCCAACGTTGGCCGCTACCTTCATTAGAATGCATTTCCACGACTGCTTCGTTCGGGGTTGTGATGCTTCTGTACTTCTGAATTCAACCGGTAGCAAGCAAAGCGAGAAGGCATCTCCACCGAACCAATCATTGAGAGGGTTTGACTTTATTGATAAAATTAAGAAACTTTTGGAAGCTGAGTGCCCTGGAGTTGTCTCCTGTGCCGACATTATTTCTTTGGTTGCAAGAGACTCCGTCGTTGCCATTTTGCATGATTTGAACAATATTCGTGAAAATGGTGCATGGGAACAGGGCGGACCATTCTGGAAGGTTCCGACTGGAAGAAGAGATGGTCTGATCTCAAAAGCCTCCGAAGCTTCGGCGAACCTTCCGCCACCGTCGGCCAACTTGTCGAGTCTCCGAGGATTCTTCGCCAGACAAGGCCTCGATCTCAAAGACTTGGTTTTGTTATCCGGAGCTCATACAATCGGAATATCCCACTGCTCCTCATTCACAAAGCGTCTGTACAACTTCAGTGGAAAGGGAGACCAAGACCCATCACTCGACGGCGAATACGCTGCAAATCTAAAGGCAAAGAAATGCAAAAGCTTAAACGCCAGTGGCATCGTGGAAATGGACCCTGGCAGTTTCAGGACCTTCGATCTCAGCTACTACTCTCTTCTCCTCAAGCGACGAGGCCTCTTCCAGTCCGACGCGGCTCTGATCACCAGCCCAGTCACCAATGCCTTCGTCACTGGCCTGCTCACTGGCTCGGTCCAGAATTTCTTTGCCGAGTTTGGGTTGGCCATGGAGAAGATGGGTCGGATCGGAGTCAAGACCGGCGCTGAGGGTGAGATTCGCAAGCACTGTGCCGTTGTCAATGGCTGA 1023 50.34 MELSRCLVFLLVCLLGLASSSQAQLELGFYAKSCPRAEKIIYDFVYKNIPKAPTLAATFIRMHFHDCFVRGCDASVLLNSTGSKQSEKASPPNQSLRGFDFIDKIKKLLEAECPGVVSCADIISLVARDSVVAILHDLNNIRENGAWEQGGPFWKVPTGRRDGLISKASEASANLPPPSANLSSLRGFFARQGLDLKDLVLLSGAHTIGISHCSSFTKRLYNFSGKGDQDPSLDGEYAANLKAKKCKSLNASGIVEMDPGSFRTFDLSYYSLLLKRRGLFQSDAALITSPVTNAFVTGLLTGSVQNFFAEFGLAMEKMGRIGVKTGAEGEIRKHCAVVNG 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6985052 6989054 + Maker00008029 Lcy4g0572 630098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0572 340 CDD secretory_peroxidase 24 338 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy4g0572 340 ProSiteProfiles Plant heme peroxidase family profile. 24 339 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0572 340 PANTHER PEROXIDASE 25-RELATED 15 335 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Lcy4g0572 340 SUPERFAMILY Heme-dependent peroxidases 24 339 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0572 340 Pfam Peroxidase 43 297 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0572 340 Gene3D - 28 339 - -
Lcy4g0572 340 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
Lcy4g0572 340 ProSitePatterns Peroxidases proximal heme-ligand signature. 198 208 IPR019793 -
Lcy4g0572 340 Gene3D Peroxidase, domain 2 176 318 - -
Lcy4g0572 340 PRINTS Plant peroxidase signature 272 289 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0572 340 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0572 340 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0572 340 PRINTS Plant peroxidase signature 313 326 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0572 340 PRINTS Plant peroxidase signature 256 271 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0572 340 PRINTS Plant peroxidase signature 150 165 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0572 340 PRINTS Plant peroxidase signature 197 209 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0572 340 FunFam Peroxidase 176 318 - -
Lcy4g0572 340 FunFam Peroxidase 28 184 - -
Lcy4g0572 340 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0572 340 PRINTS Haem peroxidase superfamily signature 258 273 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0572 340 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0572 340 PRINTS Haem peroxidase superfamily signature 198 213 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0570 Lcy-Chr4:6967612 Lcy4g0572 Lcy-Chr4:6985052 1.54E-117 dispersed
Lcy4g0572 Lcy-Chr4:6985052 Lcy8g1452 Lcy-Chr8:41193682 7.58E-147 dispersed
Lcy4g0571 Lcy-Chr4:6973599 Lcy4g0572 Lcy-Chr4:6985052 9.17E-203 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0572 K00430 - csv:101213629 440.654