Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0596 ATGGTGGCCAAGAGAAGAGGTGTCAGGAACTTGGTCACTATCAGCTGGTCTGCGGAGGAGTTTATGTCTTTTTTCCTTTTGTACTCATTTGTGCTTTTTATTTCTGTCGTTAATTGCTTTGCTAAAGATCTCTTAGAATTGAAGAGTTGCATAAGTGATGAGAAAGGGGATACTCTTGTGTCGGCAGGGTCGAGATTCGAACTTGGATTTTTTACGCCGTATGGCAGCTTTGATAGCAGAAGATATGTGGGAATATGGTATTACAAATCAAATCCAAGTACAGTTGTCTGGGTTGCCAATAGAGACAGGCCACTTGCTGGTTCGGATGGTGTCTTTAAGATTGAGGATGATGGCAACCTCAAAGTATATGATGGAAATCGGAATCTTTATTGGTCAACAAACATTGGAAGTTCTGTACTCAATCACAGGACCCTGAAGCTAATGGATAATGGAAATCTGGTTTTGAGCTGTGAAGATCAAGAAGACTTGTCTGAGCAAATCCTCTGGCAGAGTTTTGATTACCCAACTGACACATTTCTTCCTGGCATGGTAATGGATGACAACTTAGTGCTGACCTCATGGGAGAGCTATAACGACCCAGCTCAAGGGAACTTCACTTTTCAGCTAGATCAAGATGGAGGCCAATATGTCATTTGGAAGAGATCAGTTAAATACTGGAAAAGTGGAGTTTCAGGTAAGTTTATTACCACTGATAAGATGCCTGCAGCATTGTTATACCTTCTGTCAAATTTCTCATCGAAAACTGTCCCAAACTTCTCCGTGCCACATCTCACATCATCATTGTATATTGATACAAGGCTGGTATTGAACAGCTCAGGTCAGCTTCAATATTTAAACTGGGAGGATCACAAAGTCTGGTCTCAGATTTGGGAGGAGCCAAGAGATAGGTGCAATGTGTATAATGCGTGCGGAGATTTTGCTAGCTGTAATAGTAAGGGTGGTATGGCTTGCAAATGCCTGCCTGGTTTTGAGCCTACCTCTCCTGGGAGTTGGAATATTGGAGATTATTCGGGTGGATGCATCAGAAAGTCGCCAATATGCACCGTCGACAATGAGAGTGACACATTTTTGAGTCTAAAGATGATGAAAGCTGGAAACCCGGACTTCCAATTTAATGCTAAAGATGACTTGGATTGCAAATTGGAGTGCCTCAACAACTGCCAATGTCAGGCTTACTCATATGTGGAAGCTAATATCACAAGGCAGGGTGGGATTGATAACTCTGCCTGTTGGATTTGGTCTGGAGATCTCAACAATCTTCAGGACGAGTTTGATAATGGTCGTGACCTCAACGTTCGAGTAGCAGTTCGAGATCTAGAATCGACGGTCAGAAATTGTGGAACATGTGGCACAAACCTCATTCCTTATCCGCTTAGCACAGGACCTGAATGTGGTGATCCCATGTACTTCAATTTTAATTGCAATGTGGCCACTGGCCAGGTAAACTTTGAAGCAGCAGGTGGAATGTACAAGGTTAAATTCATCGATTCAGAAGCTCGGAAATTTATCATTCAAACCAAGGAAGCCGGTGATTGCGGTGATAAAAATTGGATAAACAAAACCATTCAGCTGAACCAGTCATCTCCTTTCCATGTAACCAGCTGGTGCAACTTTAAGGAGACTAATCCAGAGATTTTTTCTCCCGGAACCAGCAATGAAGTTGAAATTGGTTGGGAGTCACCATTAGAGCCAACTTGTTCTTCAACTATGGACTGCAAAGACTGGCCTTATTCAACCTGCAACATGAGTAAAGATGGAATCAGAAGATGCCTTTGCATAACAAACTTCCATTGGAATGGCTGGAGTTTGAATTGCACTACAGATCACAACAAAGAAAAGGATGGGAGAGGCAAGACGACCTTCTCTGTGATTATTGTTGCAACAACCATATCTATAGTCTTTCTGATGATTCTTTCATGTACTGTATTTTATATATACTTCTCCAAAACTGGGCTCATCGACAGACAAGAAAGTAGGGGAAACAGCCAAAAAGACTTAATGCATCACTTGTACGACAACGAGAGACGTGTCAAAGATCTGATCGAATCAGGCCGATTCAAGGAAGATGACACGAATGGAATAGACATTCCGTTTTTTGATTTGGAAACAATTCTAAATGCCACAGGGAACTTCTCTATTGCAAATAAGCTCGGACAGGGAGGTTTTGGGCCAGTTTACAAGGGCAAGTTCCCAAGTGGGCAGGAGATTGCTGTAAAGAGGCTCTCAAGTGGTTCAGGACAAGGCTTTGAGGAGTTTAAGAATGAGGTTTTGTTAATTGCGAAACTTCAACATCGAAATCTTGTAAGACTTTTGGGCTATTGTGTTGAAGGTGATGAAAAGATGTTGCTTTATGAATATATGCCAAACAAAAGCTTGGACGCCTTTATATTCGATCAAAAGCTAAGTGTGGCATTGGATTGGGACATGCGCTTCAATGTCATCTTAGGAATTGCTCGTGGCCTTCTTTACCTACACCAAGATTCGAGGTTGAGAATCATTCATAGAGATTTGAAGACAAGCAACATTCTTCTAGATGAGGAGATGAATCCCAAAATATCAGACTTCGGCTTGGCCAGGATCTTTGGAGGGAAAGAAACTGCCACAAATACCAAAAGGGTGGTGGGGACTTATGGATACATGTCACCAGAATACGCATTGGATGGCATATTTTCTGTCAAATCTGATGTCTTTAGCTTCGGTGTAGTCGTAATCGAGATCATTAGTGGAAAAAGGAATACAGGATTCTATCACTCGGAGAAAGCTTTGAGTCTTCTAGGCTACGCTTGGGATTTATGGATGAAAGACGGAGGCTTGGATTTGATGGAGCAAACACTGGGTGAGAATTGCAAGAGAGATGAATATTTGAAGTGTTTAAATGTGGGGCTGTTGTGTGTCCAGGAAGATCCATGGGACCGACCAACCATGTCGAATGTGGTCTTCATGCTTGGTAGTGAAACTGCAACTCTTCCATCTCCAAAACCACCGGCGTTCGTTGTGCGGCGGTGCCCTTCGAGCCGAGCTTCTTCCTCCACTAAACCAGAAACCTTCTCCCATAATGAGTTGACAGTCACCTTAAAGGAAGGAAGATAG 3111 42.59 MVAKRRGVRNLVTISWSAEEFMSFFLLYSFVLFISVVNCFAKDLLELKSCISDEKGDTLVSAGSRFELGFFTPYGSFDSRRYVGIWYYKSNPSTVVWVANRDRPLAGSDGVFKIEDDGNLKVYDGNRNLYWSTNIGSSVLNHRTLKLMDNGNLVLSCEDQEDLSEQILWQSFDYPTDTFLPGMVMDDNLVLTSWESYNDPAQGNFTFQLDQDGGQYVIWKRSVKYWKSGVSGKFITTDKMPAALLYLLSNFSSKTVPNFSVPHLTSSLYIDTRLVLNSSGQLQYLNWEDHKVWSQIWEEPRDRCNVYNACGDFASCNSKGGMACKCLPGFEPTSPGSWNIGDYSGGCIRKSPICTVDNESDTFLSLKMMKAGNPDFQFNAKDDLDCKLECLNNCQCQAYSYVEANITRQGGIDNSACWIWSGDLNNLQDEFDNGRDLNVRVAVRDLESTVRNCGTCGTNLIPYPLSTGPECGDPMYFNFNCNVATGQVNFEAAGGMYKVKFIDSEARKFIIQTKEAGDCGDKNWINKTIQLNQSSPFHVTSWCNFKETNPEIFSPGTSNEVEIGWESPLEPTCSSTMDCKDWPYSTCNMSKDGIRRCLCITNFHWNGWSLNCTTDHNKEKDGRGKTTFSVIIVATTISIVFLMILSCTVFYIYFSKTGLIDRQESRGNSQKDLMHHLYDNERRVKDLIESGRFKEDDTNGIDIPFFDLETILNATGNFSIANKLGQGGFGPVYKGKFPSGQEIAVKRLSSGSGQGFEEFKNEVLLIAKLQHRNLVRLLGYCVEGDEKMLLYEYMPNKSLDAFIFDQKLSVALDWDMRFNVILGIARGLLYLHQDSRLRIIHRDLKTSNILLDEEMNPKISDFGLARIFGGKETATNTKRVVGTYGYMSPEYALDGIFSVKSDVFSFGVVVIEIISGKRNTGFYHSEKALSLLGYAWDLWMKDGGLDLMEQTLGENCKRDEYLKCLNVGLLCVQEDPWDRPTMSNVVFMLGSETATLPSPKPPAFVVRRCPSSRASSSTKPETFSHNELTVTLKEGR 1036
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7167896 7172905 - Maker00008013 Lcy4g0596 630122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0596 1036 Pfam Protein tyrosine and serine/threonine kinase 720 986 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g0596 1036 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 683 793 - -
Lcy4g0596 1036 ProSiteProfiles Protein kinase domain profile. 718 996 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0596 1036 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 37 172 - -
Lcy4g0596 1036 CDD STKc_IRAK 724 989 - -
Lcy4g0596 1036 MobiDBLite consensus disorder prediction 1012 1029 - -
Lcy4g0596 1036 Pfam D-mannose binding lectin 94 189 IPR001480 -
Lcy4g0596 1036 SUPERFAMILY alpha-D-mannose-specific plant lectins 95 200 IPR036426 -
Lcy4g0596 1036 Pfam S-locus glycoprotein domain 226 333 IPR000858 GO:0048544(InterPro)
Lcy4g0596 1036 ProSitePatterns Serine/Threonine protein kinases active-site signature. 839 851 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g0596 1036 Gene3D Transferase(Phosphotransferase) domain 1 794 996 - -
Lcy4g0596 1036 Gene3D - 43 172 IPR036426 -
Lcy4g0596 1036 MobiDBLite consensus disorder prediction 1012 1036 - -
Lcy4g0596 1036 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 47 1003 - -
Lcy4g0596 1036 ProSiteProfiles PAN/Apple domain profile. 354 442 IPR003609 -
Lcy4g0596 1036 ProSiteProfiles Bulb-type lectin domain profile. 44 168 IPR001480 -
Lcy4g0596 1036 SMART ntp_6 358 441 IPR003609 -
Lcy4g0596 1036 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 794 997 - -
Lcy4g0596 1036 CDD PAN_AP_plant 354 442 - -
Lcy4g0596 1036 Pfam Domain of unknown function (DUF3403) 991 1036 IPR021820 GO:0004674(InterPro)
Lcy4g0596 1036 SMART blect_4 52 175 IPR001480 -
Lcy4g0596 1036 SUPERFAMILY Protein kinase-like (PK-like) 703 1019 IPR011009 -
Lcy4g0596 1036 Pfam PAN-like domain 354 426 IPR003609 -
Lcy4g0596 1036 SMART serkin_6 718 962 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0596 1036 CDD B_lectin 56 175 IPR001480 -
Lcy4g0596 1036 Gene3D Phosphorylase Kinase; domain 1 682 793 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0596 Lcy-Chr4:7167896 Lcy5g1958 Lcy-Chr5:42435742 2.33E-135 dispersed
Lcy8g1494 Lcy-Chr8:41591552 Lcy4g0596 Lcy-Chr4:7167896 1.34E-78 dispersed
Lcy9g1247 Lcy-Chr9:37044292 Lcy4g0596 Lcy-Chr4:7167896 5.34E-60 dispersed
Lcy4g0596 Lcy-Chr4:7167896 Lcy4g0600 Lcy-Chr4:7200588 4.97E-67 proximal
Lcy1g0402 Lcy-Chr1:3574770 Lcy4g0596 Lcy-Chr4:7167896 1.69E-129 wgd
Lcy4g0596 Lcy-Chr4:7167896 Lcy8g1492 Lcy-Chr8:41570728 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65849 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0596 - - - 0.0