Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0618 ATGACATTTTTCTCCTTCTTCTCTAGAGCTTCAAGATCTTTTCATGGCTCCCCTGCATACTCAAAGCTTCTAGTCATCAGCACCCTCAGTAGCGGAGGTCTATTGTCATATGCAGATTCACAATCAGACGCCGGCAGTCCTATTGAGGAGTGCCCAAAACAGAGAGTATTAGTGCTTGGAACAGGATGGGCCGGTACCAGTTTCCTCAAGGATCTGGATGCTTCAAAATATGATGTTCAGGTTGTTTCGCCTCAGAATTATTTCTCATTTACTCCTTTATTGCCTAGTGTAACATGTGGATCAGTTGAAGCACGAAGCATTGTGGAACCGGTTCGAAACATCGTGAAGAAGAGAAAAGGTGAAATTAAATTCTGGGAAGCTGAATGCACAAAGATTGATGCTGCAAACAAAAAGGTTTTCTGCCGGTCTAATGCTGACAATAACTTGGTTGGAAATAGGGAGTTTGCTTTAGAATATGACTACTTGGTAATAGCAATGGGAGCACAAGTTAATACTTTTAATACTCCTGGTGTCAAGGAGAACTGTCATTTTCTCAAGGAAGTGGAAGATGCTCAAAAGATCCGCAGAAGTGTGATAGATTGCTTTGAAATGGCTGTGATTCCTAGTCTAAGTGAAGAAGAGCGAAGGAGAAATCTTCATTTTGTTATTGTTGGAGGGGGTCCCACTGGGGTTGAATTTGCTGCAGAGCTTCATGACTTTTTTGAAGAAGATTTAGTTAATTTATATCCTACGGTTAAAGATATGGTGAAAATTTCAGTGATTCAATCAGGAGATCACATCTTGAATGCGTTTGATGAAAGAATTAGTTCATTTGCCGAACAAAAATTCCAAAGAGATGGTATTGATGTGTACACAGGATGTCGAGTTGTCAGTGTATCTGATCAGGAAATTAAGATGAAGGTGAAATCAACTGGAGAAGTCTGTTCAATACCACACGGACTAATTGTGTGGTCTACGGGCATCATGACTCGTCCTGTTGTGAAGGATTTCATGGAGCAGATTGGCCAGGGTAGTAGACGCATTCTAGCCACTGATGAATGGCTTCAAGTGAAGGGCGCTCAAAATGTGTATGCCATTGGTGATTGTGCTACAATTGACCAACGCAAAATTATGGTATATGAAGCCATAACTGTTGATTATGAAGATATTGCAACCATATTTAAAGCGGCAGACAAAGATAATTCTGGAACCTTAACCGTTGCAGAATTTCAAGATGTTCTAGATGATATCCTCATAAGGTATCCTCAAGTAGAAATATATTTGAGGAGCAAACATCTACGTGATGTAAAAGATCTATTGAAAGATTCCCAGGGACATGAGAACGATATAGATATTGAAGGATTTAAGTCGGCTCTTTCTCATGCTGACTCGGAGATGAAAAGTCTTCCTGCTACTGCACAGGTTGCTGCCCAACAAGGTGCGTATCTTTGCAGGTGCTTCAACCGTAGGGACCATTGCACAGAGAATCCTGAAGGCCCTCGACGTTTTAAGAGTTCTGGACGTCATCAATTCCTTCCCTTTCGGTACAAGCACTTGGGACAGTTCGCTCCTTTAGGGGGAGAACAAGCTGCTGCAGAACTCCCTGGAGACTGGGTTTCCATGGGTCGCAGCACTCAGTGGCTTTGGTATTCTGTATATGCAAGCAAGCAAGTCAGCTGGCGCACAAGGTATTTAGTGGTATCAGATTGGACAAGAAAGTTTATATTTGGCAGAGACTCGAGCCGCATCTGA 1752 42.18 MTFFSFFSRASRSFHGSPAYSKLLVISTLSSGGLLSYADSQSDAGSPIEECPKQRVLVLGTGWAGTSFLKDLDASKYDVQVVSPQNYFSFTPLLPSVTCGSVEARSIVEPVRNIVKKRKGEIKFWEAECTKIDAANKKVFCRSNADNNLVGNREFALEYDYLVIAMGAQVNTFNTPGVKENCHFLKEVEDAQKIRRSVIDCFEMAVIPSLSEEERRRNLHFVIVGGGPTGVEFAAELHDFFEEDLVNLYPTVKDMVKISVIQSGDHILNAFDERISSFAEQKFQRDGIDVYTGCRVVSVSDQEIKMKVKSTGEVCSIPHGLIVWSTGIMTRPVVKDFMEQIGQGSRRILATDEWLQVKGAQNVYAIGDCATIDQRKIMVYEAITVDYEDIATIFKAADKDNSGTLTVAEFQDVLDDILIRYPQVEIYLRSKHLRDVKDLLKDSQGHENDIDIEGFKSALSHADSEMKSLPATAQVAAQQGAYLCRCFNRRDHCTENPEGPRRFKSSGRHQFLPFRYKHLGQFAPLGGEQAAAELPGDWVSMGRSTQWLWYSVYASKQVSWRTRYLVVSDWTRKFIFGRDSSRI 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7387671 7392674 - Maker00007991 Lcy4g0618 630144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0618 583 PRINTS FAD-dependent pyridine nucleotide reductase signature 56 75 - -
Lcy4g0618 583 PRINTS FAD-dependent pyridine nucleotide reductase signature 159 177 - -
Lcy4g0618 583 PRINTS FAD-dependent pyridine nucleotide reductase signature 220 238 - -
Lcy4g0618 583 ProSitePatterns EF-hand calcium-binding domain. 398 410 IPR018247 -
Lcy4g0618 583 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 431 582 - -
Lcy4g0618 583 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 46 414 - -
Lcy4g0618 583 PANTHER NADH DEHYDROGENASE 44 583 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Lcy4g0618 583 SUPERFAMILY FAD/NAD(P)-binding domain 54 272 IPR036188 -
Lcy4g0618 583 Gene3D - 432 582 - -
Lcy4g0618 583 Gene3D - 48 404 - -
Lcy4g0618 583 Pfam Pyridine nucleotide-disulphide oxidoreductase 55 378 IPR023753 GO:0016491(InterPro)
Lcy4g0618 583 SUPERFAMILY EF-hand 330 463 IPR011992 -
Lcy4g0618 583 SUPERFAMILY FAD/NAD(P)-binding domain 219 373 IPR036188 -
Lcy4g0618 583 ProSiteProfiles EF-hand calcium-binding domain profile. 385 420 IPR002048 GO:0005509(InterPro)
Lcy4g0618 583 Pfam NDH2 C-terminal domain 518 579 IPR054585 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0618 Lcy-Chr4:7387671 Lcy8g1736 Lcy-Chr8:43853081 9.08E-71 dispersed
Lcy1g0375 Lcy-Chr1:3340754 Lcy4g0618 Lcy-Chr4:7387671 2.28E-65 wgd
Lcy4g0618 Lcy-Chr4:7387671 Lcy5g1939 Lcy-Chr5:42207229 1.33E-239 wgd
Lcy4g0618 Lcy-Chr4:7387671 Lcy8g1504 Lcy-Chr8:41716806 3.31E-249 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0618 K03885 - csv:101203130 1083.94