Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0624 ATGTTTTCTTCGATCCAAACAATTGATTTAAGCAACAATCATATAGGGGGGAGTATTCCATCCAGTTTACCCGTTACTATTCAGAACATTTTTCTTTCAGCTAATGAGTTCACTGGAAGCATTCCGAGTTCATTATCATCCTTGATTCAATTGACAGCCATGTCGTTGAATGATAACAAATTAAGTGGACAAATACCAGATTCCTTTCAAGCCATTACTCAACTGGTCAATTTGTATGTCCCATCTCTTAGTTTTCGTATCTATGCTTTAGTCTTTGGTTTGATGACTGAAGCCAATAATCAGCTATCAGGGACCCTCGATGTTCTACAAGACCTTCCACTAAAAGACTTGAATATAGAGAACAACCTTTTTTCTGGACCCATACCTGAGAAGTTGCTGAGTATTCCTAATTTTAGGAAGGATGGAAACCCATTTAATTCTTCTGTTTCTCCGACACCTCCTCCTTCTGTATCTCCACCATCAAAGCCAGCACCAGCACCGCCAGTTTCTGGAGCACCACCATCTCCTCCTCAAAAACCTAAGAAACAGGCTGATGGACCATCTGCACCTGAGGAATCCAGTACTGGAAGAAATAAGAAAAGCACTAAAAGGGTTGTTTTGATAACAATTGCAGTGGTTTTGTCATTCATAATCCTGGTTTTGGCATGTGTGCTTTTTATGCCAAGGTGCAGAAGGAGAACAGTTGATAGTTCCAAGCGACATCATCAGATAGGTGCCTATAGGGGTGAGAGAGAAAATGTTGGAAATGAGGGATCCATGCACCATCCGATTGATCAGATACCTAAAGTTTCAAAAGAGGCAGTTGTAAGGCCGAAACAGGAAACTCAAACGGAGGCTCTGAAGGTTCCAAAAGCTCATGAAGAGAGAGAGAGAAACATGCCAAGAATGAGTGCTATTCCAAAGAAGGATCATCATGAAGTAGATATGAGCGCACTCGATGTCTATTTAATGCCTCCCCCTCCCCCACCACCTCCCCCACCCCCTCCACCACCTCCTGTTGAAGAGGTCACGGTCGTGCCCAATGTTCCAGCTGAAGTTCCTCCCTTGAAGCCTCCCACCAAACATAGAATAACCTCAACTTTTGCAAAATCTTTCACTATTGCATCCCTTCAGCAATATACAAACAGCTTTTCACAAGAGAATCTTATAGGAGAAGGAATGCTGGGGAGTGTTTATAGGGCACAGCTTCCCAGTGGGAAGCACCTGGCCGTAAAAAAACTGGATAAAAGAGCATTCAGTCAGCAAAAGGATGATGAGTTTCTTGAGTTAGTGAATAATATCGATAGAATCCGGCATGCTAATGTGGTTGAGCTCAGTGGTTACTGTGCGGAGCATGGTGAAAGGCTTCTTATCTATGAGTATTGCAGTAGTGGAACATTGCAGGATGCACTGCACTCAGACGAAGAGTTCAGAAAGAAACTTTCTTGGAATGCCCGCATTAGAATGGCTCTTGGGGCTGCAAGAGCCTTGGAGTATCTGCATGAGGTCTGTCAGCCACCTGTTATTCATAGGAATTTCAAGTCTGCAAATGTCCTACTTGATGACGATCTTTCAGTGCGTGTTTCAGATTGTGGTCTGGCTCCATTAATATCAAAAGGAGCTGTTAGTCAGCTATCAGGTCAGCTTCTAACAGCATATGGTTACGGAGCGCCAGAATTTGAATCAGGAATTTATACACTTGAGAGTGACGTTTACAGCTTTGGTGTGGTTATGCTGGAACTTCTTACTGGCCGGATGTCTTATGACAGAACAAGGACCCGAGGTGAGCAATTTTTAGTCAGATGGGCGATTCCGCAGCTTCACGACATAGAGGCATTGACAAGCATGGTTGATCCTTCACTCAATGGTCGATACCCCGCCAAATCCTTGTCATACTTTGCTGATATCATATCAAAATGTGTTCAGTCGGAGCCTGAATTCCGGCCACCAATGTCGACGGTTGTTCAGGACTTGCTCAACATGATAAGGAGAGAACCACAGGGAAGTGGTTCAAGTGAAGATTGA 2025 43.7 MFSSIQTIDLSNNHIGGSIPSSLPVTIQNIFLSANEFTGSIPSSLSSLIQLTAMSLNDNKLSGQIPDSFQAITQLVNLYVPSLSFRIYALVFGLMTEANNQLSGTLDVLQDLPLKDLNIENNLFSGPIPEKLLSIPNFRKDGNPFNSSVSPTPPPSVSPPSKPAPAPPVSGAPPSPPQKPKKQADGPSAPEESSTGRNKKSTKRVVLITIAVVLSFIILVLACVLFMPRCRRRTVDSSKRHHQIGAYRGERENVGNEGSMHHPIDQIPKVSKEAVVRPKQETQTEALKVPKAHEERERNMPRMSAIPKKDHHEVDMSALDVYLMPPPPPPPPPPPPPPPVEEVTVVPNVPAEVPPLKPPTKHRITSTFAKSFTIASLQQYTNSFSQENLIGEGMLGSVYRAQLPSGKHLAVKKLDKRAFSQQKDDEFLELVNNIDRIRHANVVELSGYCAEHGERLLIYEYCSSGTLQDALHSDEEFRKKLSWNARIRMALGAARALEYLHEVCQPPVIHRNFKSANVLLDDDLSVRVSDCGLAPLISKGAVSQLSGQLLTAYGYGAPEFESGIYTLESDVYSFGVVMLELLTGRMSYDRTRTRGEQFLVRWAIPQLHDIEALTSMVDPSLNGRYPAKSLSYFADIISKCVQSEPEFRPPMSTVVQDLLNMIRREPQGSGSSED 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7445231 7454327 - Maker00007990 Lcy4g0624 630150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0624 674 ProSiteProfiles Protein kinase domain profile. 384 662 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0624 674 SUPERFAMILY L domain-like 3 137 - -
Lcy4g0624 674 Gene3D Transferase(Phosphotransferase) domain 1 463 667 - -
Lcy4g0624 674 Pfam Protein tyrosine and serine/threonine kinase 387 658 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g0624 674 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 353 461 - -
Lcy4g0624 674 Gene3D Ribonuclease Inhibitor 1 152 IPR032675 -
Lcy4g0624 674 MobiDBLite consensus disorder prediction 148 183 - -
Lcy4g0624 674 PANTHER LEUCINE RICH REPEAT KINASE 2 3 660 IPR051420 -
Lcy4g0624 674 SUPERFAMILY Protein kinase-like (PK-like) 359 658 IPR011009 -
Lcy4g0624 674 SUPERFAMILY Formin homology 2 domain (FH2 domain) 328 337 - -
Lcy4g0624 674 MobiDBLite consensus disorder prediction 143 200 - -
Lcy4g0624 674 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 462 672 - -
Lcy4g0624 674 MobiDBLite consensus disorder prediction 275 299 - -
Lcy4g0624 674 Gene3D Phosphorylase Kinase; domain 1 356 461 - -
Lcy4g0624 674 Pfam Leucine Rich Repeat 51 70 IPR001611 GO:0005515(InterPro)
Lcy4g0624 674 Pfam Leucine Rich Repeat 4 23 IPR001611 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0624 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0624 Lcy-Chr4:7445231 Lcy5g1479 Lcy-Chr5:35449049 1.57E-122 dispersed
Lcy7g1007 Lcy-Chr7:10609952 Lcy4g0624 Lcy-Chr4:7445231 6.87E-36 dispersed
Lcy1g0371 Lcy-Chr1:3299577 Lcy4g0624 Lcy-Chr4:7445231 1.55E-136 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy4g0624 . 2 672 Strubbelig Receptor Gene Family AT4G03390 56.6 2.3e-184 643.3
Lcy3g2287 . 431 734 Strubbelig Receptor Gene Family AT4G03390 57.4 1.6e-92 338.2
Lcy5g0631 . 9 708 Strubbelig Receptor Gene Family AT5G06820 51.8 2.5e-196 682.9
Lcy10g0819 . 10 696 Strubbelig Receptor Gene Family AT1G78980 59.2 1.0e-186 651.0
Lcy13g0086 . 156 838 Strubbelig Receptor Gene Family AT1G78980 51.5 2.2e-149 526.9
Lcy3g2287 . 81 737 Strubbelig Receptor Gene Family AT1G78980 51.7 4.2e-124 443.0
Lcy10g0819 . 4 673 Strubbelig Receptor Gene Family AT3G13065 51.3 4.3e-142 502.7
Lcy3g2287 . 81 732 Strubbelig Receptor Gene Family AT3G13065 50.8 1.8e-100 364.4
Lcy5g1479 . 446 739 Strubbelig Receptor Gene Family AT1G11130 53.4 6.4e-85 312.8
Lcy5g0631 . 9 708 Strubbelig Receptor Gene Family AT5G06820 51.8 2.5e-196 682.9
Lcy4g0624 . 2 672 Strubbelig Receptor Gene Family AT4G03390 56.6 2.3e-184 643.3
Lcy3g2287 . 431 734 Strubbelig Receptor Gene Family AT4G03390 57.4 1.6e-92 338.2
Lcy10g0819 . 4 673 Strubbelig Receptor Gene Family AT3G13065 51.3 4.3e-142 502.7
Lcy3g2287 . 81 732 Strubbelig Receptor Gene Family AT3G13065 50.8 1.8e-100 364.4
Lcy10g0819 . 10 696 Strubbelig Receptor Gene Family AT1G78980 59.2 1.0e-186 651.0
Lcy13g0086 . 156 838 Strubbelig Receptor Gene Family AT1G78980 51.5 2.2e-149 526.9
Lcy3g2287 . 81 737 Strubbelig Receptor Gene Family AT1G78980 51.7 4.2e-124 443.0
Lcy13g0086 . 149 831 Strubbelig Receptor Gene Family AT1G53730 60.9 1.7e-205 713.4
Lcy3g2287 . 60 745 Strubbelig Receptor Gene Family AT1G53730 60.9 6.1e-179 625.2
Lcy10g0819 . 5 681 Strubbelig Receptor Gene Family AT1G53730 50.7 5.5e-156 548.9
Lcy13g0086 . 157 835 Strubbelig Receptor Gene Family AT3G14350 52.3 3.8e-178 622.5
Lcy3g2287 . 80 743 Strubbelig Receptor Gene Family AT3G14350 56.8 5.7e-158 555.4
Lcy5g1479 . 394 770 Strubbelig Receptor Gene Family AT4G22130 82.0 1.4e-175 613.6
Lcy13g0086 . 519 847 Strubbelig Receptor Gene Family AT4G22130 63.7 2.9e-120 429.9
Lcy3g2287 . 438 751 Strubbelig Receptor Gene Family AT4G22130 65.8 2.1e-118 423.7
Lcy4g0624 . 369 664 Strubbelig Receptor Gene Family AT4G22130 62.0 2.4e-106 383.6
Lcy10g0819 . 350 695 Strubbelig Receptor Gene Family AT4G22130 53.1 7.5e-100 362.1
Lcy5g0631 . 360 682 Strubbelig Receptor Gene Family AT4G22130 52.9 6.1e-94 342.4
Lcy1g0371 . 418 685 Strubbelig Receptor Gene Family AT4G22130 59.3 1.7e-88 324.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003611 2 1 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 0 1 1 1 1 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65851 None None None None Lcy PK