Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0624 ATGTTTTCTTCGATCCAAACAATTGATTTAAGCAACAATCATATAGGGGGGAGTATTCCATCCAGTTTACCCGTTACTATTCAGAACATTTTTCTTTCAGCTAATGAGTTCACTGGAAGCATTCCGAGTTCATTATCATCCTTGATTCAATTGACAGCCATGTCGTTGAATGATAACAAATTAAGTGGACAAATACCAGATTCCTTTCAAGCCATTACTCAACTGGTCAATTTGTATGTCCCATCTCTTAGTTTTCGTATCTATGCTTTAGTCTTTGGTTTGATGACTGAAGCCAATAATCAGCTATCAGGGACCCTCGATGTTCTACAAGACCTTCCACTAAAAGACTTGAATATAGAGAACAACCTTTTTTCTGGACCCATACCTGAGAAGTTGCTGAGTATTCCTAATTTTAGGAAGGATGGAAACCCATTTAATTCTTCTGTTTCTCCGACACCTCCTCCTTCTGTATCTCCACCATCAAAGCCAGCACCAGCACCGCCAGTTTCTGGAGCACCACCATCTCCTCCTCAAAAACCTAAGAAACAGGCTGATGGACCATCTGCACCTGAGGAATCCAGTACTGGAAGAAATAAGAAAAGCACTAAAAGGGTTGTTTTGATAACAATTGCAGTGGTTTTGTCATTCATAATCCTGGTTTTGGCATGTGTGCTTTTTATGCCAAGGTGCAGAAGGAGAACAGTTGATAGTTCCAAGCGACATCATCAGATAGGTGCCTATAGGGGTGAGAGAGAAAATGTTGGAAATGAGGGATCCATGCACCATCCGATTGATCAGATACCTAAAGTTTCAAAAGAGGCAGTTGTAAGGCCGAAACAGGAAACTCAAACGGAGGCTCTGAAGGTTCCAAAAGCTCATGAAGAGAGAGAGAGAAACATGCCAAGAATGAGTGCTATTCCAAAGAAGGATCATCATGAAGTAGATATGAGCGCACTCGATGTCTATTTAATGCCTCCCCCTCCCCCACCACCTCCCCCACCCCCTCCACCACCTCCTGTTGAAGAGGTCACGGTCGTGCCCAATGTTCCAGCTGAAGTTCCTCCCTTGAAGCCTCCCACCAAACATAGAATAACCTCAACTTTTGCAAAATCTTTCACTATTGCATCCCTTCAGCAATATACAAACAGCTTTTCACAAGAGAATCTTATAGGAGAAGGAATGCTGGGGAGTGTTTATAGGGCACAGCTTCCCAGTGGGAAGCACCTGGCCGTAAAAAAACTGGATAAAAGAGCATTCAGTCAGCAAAAGGATGATGAGTTTCTTGAGTTAGTGAATAATATCGATAGAATCCGGCATGCTAATGTGGTTGAGCTCAGTGGTTACTGTGCGGAGCATGGTGAAAGGCTTCTTATCTATGAGTATTGCAGTAGTGGAACATTGCAGGATGCACTGCACTCAGACGAAGAGTTCAGAAAGAAACTTTCTTGGAATGCCCGCATTAGAATGGCTCTTGGGGCTGCAAGAGCCTTGGAGTATCTGCATGAGGTCTGTCAGCCACCTGTTATTCATAGGAATTTCAAGTCTGCAAATGTCCTACTTGATGACGATCTTTCAGTGCGTGTTTCAGATTGTGGTCTGGCTCCATTAATATCAAAAGGAGCTGTTAGTCAGCTATCAGGTCAGCTTCTAACAGCATATGGTTACGGAGCGCCAGAATTTGAATCAGGAATTTATACACTTGAGAGTGACGTTTACAGCTTTGGTGTGGTTATGCTGGAACTTCTTACTGGCCGGATGTCTTATGACAGAACAAGGACCCGAGGTGAGCAATTTTTAGTCAGATGGGCGATTCCGCAGCTTCACGACATAGAGGCATTGACAAGCATGGTTGATCCTTCACTCAATGGTCGATACCCCGCCAAATCCTTGTCATACTTTGCTGATATCATATCAAAATGTGTTCAGTCGGAGCCTGAATTCCGGCCACCAATGTCGACGGTTGTTCAGGACTTGCTCAACATGATAAGGAGAGAACCACAGGGAAGTGGTTCAAGTGAAGATTGA 2025 43.7 MFSSIQTIDLSNNHIGGSIPSSLPVTIQNIFLSANEFTGSIPSSLSSLIQLTAMSLNDNKLSGQIPDSFQAITQLVNLYVPSLSFRIYALVFGLMTEANNQLSGTLDVLQDLPLKDLNIENNLFSGPIPEKLLSIPNFRKDGNPFNSSVSPTPPPSVSPPSKPAPAPPVSGAPPSPPQKPKKQADGPSAPEESSTGRNKKSTKRVVLITIAVVLSFIILVLACVLFMPRCRRRTVDSSKRHHQIGAYRGERENVGNEGSMHHPIDQIPKVSKEAVVRPKQETQTEALKVPKAHEERERNMPRMSAIPKKDHHEVDMSALDVYLMPPPPPPPPPPPPPPPVEEVTVVPNVPAEVPPLKPPTKHRITSTFAKSFTIASLQQYTNSFSQENLIGEGMLGSVYRAQLPSGKHLAVKKLDKRAFSQQKDDEFLELVNNIDRIRHANVVELSGYCAEHGERLLIYEYCSSGTLQDALHSDEEFRKKLSWNARIRMALGAARALEYLHEVCQPPVIHRNFKSANVLLDDDLSVRVSDCGLAPLISKGAVSQLSGQLLTAYGYGAPEFESGIYTLESDVYSFGVVMLELLTGRMSYDRTRTRGEQFLVRWAIPQLHDIEALTSMVDPSLNGRYPAKSLSYFADIISKCVQSEPEFRPPMSTVVQDLLNMIRREPQGSGSSED 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7445231 7454327 - Maker00007990 Lcy4g0624 630150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0624 674 ProSiteProfiles Protein kinase domain profile. 384 662 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0624 674 SUPERFAMILY L domain-like 3 137 - -
Lcy4g0624 674 Gene3D Transferase(Phosphotransferase) domain 1 463 667 - -
Lcy4g0624 674 Pfam Protein tyrosine and serine/threonine kinase 387 658 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g0624 674 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 353 461 - -
Lcy4g0624 674 Gene3D Ribonuclease Inhibitor 1 152 IPR032675 -
Lcy4g0624 674 MobiDBLite consensus disorder prediction 148 183 - -
Lcy4g0624 674 PANTHER LEUCINE RICH REPEAT KINASE 2 3 660 IPR051420 -
Lcy4g0624 674 SUPERFAMILY Protein kinase-like (PK-like) 359 658 IPR011009 -
Lcy4g0624 674 SUPERFAMILY Formin homology 2 domain (FH2 domain) 328 337 - -
Lcy4g0624 674 MobiDBLite consensus disorder prediction 143 200 - -
Lcy4g0624 674 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 462 672 - -
Lcy4g0624 674 MobiDBLite consensus disorder prediction 275 299 - -
Lcy4g0624 674 Gene3D Phosphorylase Kinase; domain 1 356 461 - -
Lcy4g0624 674 Pfam Leucine Rich Repeat 51 70 IPR001611 GO:0005515(InterPro)
Lcy4g0624 674 Pfam Leucine Rich Repeat 4 23 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0624 Lcy-Chr4:7445231 Lcy5g1479 Lcy-Chr5:35449049 1.57E-122 dispersed
Lcy7g1007 Lcy-Chr7:10609952 Lcy4g0624 Lcy-Chr4:7445231 6.87E-36 dispersed
Lcy1g0371 Lcy-Chr1:3299577 Lcy4g0624 Lcy-Chr4:7445231 1.55E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65851 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0624 - - - 0.0