Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0630 ATGGGTGGTTGTGTCTCTACAAGCAGCCATAGTACGTGTAGTAGCCAGAGCAATGGAGAATCAGTTTCTTCCTCATGTATGGGAATTGGATTTCGAGGTCGAAAGCGAACGAAGCGAACATTCTCCGACCATGTTTATGCTCTTCAGAATCTTCCTTCAGCTCCCAACAGGATCTTCATGAATGGAAAAAGTCGTTCTTCTTGCATTTTCACGCAACAAGGACGCAAGGGCATAAACCAGGATGCCATGGTTGTGTGGGAAGATTTCATGTCTGAGGACACGATCTTTTGTGGTGTATTTGATGGTCATGGACCTTATGGTCATCTCGTTGCTCGAAAAGTGAGGGATACATTGCCTATAAAGTTGCTGTCATCCTTCCAGTCTCCTCAGTTGAAGCAAAATGACTCTGGTAAAACCTGTTTCCAGAGGAATTTGAAGAAACCTCCGGATTGTGAAGATTCTGAGAAGGATGGTTTTGCAGAGGAATCGCAGAATTCGTTATGGAGAGACGCGTTTTTGAACTCATATAAAGCTATGGATAAGGAGTTGAGATCACATCCTAATCTGGACTGCTTTTGTAGTGGTAGTACTGCAGTCACCATAGTTAAACAGGGGTCAAATCTCTTCATGGGGTATATAGGGGACTCTCGGGCAATCCTCGCTTCAAAGGACGCCAACGATTCCACAGTCGCGGTCCAATTGACCGTGGATCTTAAGCCAGATTTGCCAAGAGAAGCTGAAAGAATTAAAAGGTGTAAAGGTAGGGTCTTTGCATTGCAAGATGAGCCTGAAGTGCCAAGGGTATGGTTACCTTTCGACGATGCGCCCGGTTTAGCAATGGCTCGAGCATTTGGCGATTTCTGTTTGAAAGAATATGGAGTTATCTCTATACCTGAATTCTCTCATTATACACTCACCGACGCTGATCAGTTCATCGTTCTTGCATCAGATGGGGTATGGGATGTGTTGAGCAATGAAGAGGTGGTTGACATAGTGTCCTCGGCCCCAACTCGCTCGTCTGCTGCGAGGTCCGTGGTTGATTCTGCTGCTCGTGAATGGAAACTCAAATACCCTACCTCAAAAATGGATGACTGCGCTGTTGTCTGCTTATTTTTGGATGGGAGGATGGACTCTGAATCCGACTGTGATGAACAAGGCTTCTCATCTGCAACATTGCGTAGTAATCATTCGGGTACCGCTATCGAATCCGATGATGGCCAGAGGTCTGAGCCATGCTTGCAAAGGAATAACACTGTCAGATCATCGGAAGAAAACAATACGTATGGGGCATTACCTGTCGACGACGGGGAGATTGGTGATGTTGTGCCTGCAGAAGATCAAAACTGGTCGGGTTTGGAAGGAGTCACTCGGGTAAACTCGCTTGTTCAGCTTCCTAGATTCTCTGAAGAAAGGCCAGTGTCATAG 1425 46.11 MGGCVSTSSHSTCSSQSNGESVSSSCMGIGFRGRKRTKRTFSDHVYALQNLPSAPNRIFMNGKSRSSCIFTQQGRKGINQDAMVVWEDFMSEDTIFCGVFDGHGPYGHLVARKVRDTLPIKLLSSFQSPQLKQNDSGKTCFQRNLKKPPDCEDSEKDGFAEESQNSLWRDAFLNSYKAMDKELRSHPNLDCFCSGSTAVTIVKQGSNLFMGYIGDSRAILASKDANDSTVAVQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHYTLTDADQFIVLASDGVWDVLSNEEVVDIVSSAPTRSSAARSVVDSAAREWKLKYPTSKMDDCAVVCLFLDGRMDSESDCDEQGFSSATLRSNHSGTAIESDDGQRSEPCLQRNNTVRSSEENNTYGALPVDDGEIGDVVPAEDQNWSGLEGVTRVNSLVQLPRFSEERPVS 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7493870 7495783 - Maker00008024 Lcy4g0630 630156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0630 474 SMART PP2C_4 55 370 IPR001932 -
Lcy4g0630 474 MobiDBLite consensus disorder prediction 383 447 - -
Lcy4g0630 474 MobiDBLite consensus disorder prediction 145 159 - -
Lcy4g0630 474 MobiDBLite consensus disorder prediction 383 428 - -
Lcy4g0630 474 Pfam Protein phosphatase 2C 163 350 IPR001932 -
Lcy4g0630 474 PANTHER PROTEIN PHOSPHATASE 67 371 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy4g0630 474 CDD PP2Cc 65 372 IPR001932 -
Lcy4g0630 474 SUPERFAMILY PP2C-like 56 374 IPR036457 -
Lcy4g0630 474 ProSiteProfiles PPM-type phosphatase domain profile. 66 372 IPR001932 -
Lcy4g0630 474 FunFam probable protein phosphatase 2C 52 57 375 - -
Lcy4g0630 474 MobiDBLite consensus disorder prediction 132 159 - -
Lcy4g0630 474 Gene3D - 57 374 IPR036457 -
Lcy4g0630 474 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0226 Lcy-Chr13:2315551 Lcy4g0630 Lcy-Chr4:7493870 2.82E-25 dispersed
Lcy3g1190 Lcy-Chr3:37222537 Lcy4g0630 Lcy-Chr4:7493870 1.26E-136 dispersed
Lcy4g0630 Lcy-Chr4:7493870 Lcy4g1251 Lcy-Chr4:28606587 1.84E-138 dispersed
Lcy10g0594 Lcy-Chr10:16313786 Lcy4g0630 Lcy-Chr4:7493870 3.03E-06 transposed
Lcy4g0630 Lcy-Chr4:7493870 Lcy8g1522 Lcy-Chr8:41844103 6.30E-229 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0630 - - - 0.0