Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0636 ATGCAGCTCCGCCGTGGCCATGCTACATTTTCGTCTTTTGGGTACTTGTGGAGTGTGACAATGTTGGTTAATGTGGTGGTGATGGGGAAGTTTCTTCTGGTTGAATCAACTCCGCTCCGAAACCGGACGTCAGCTTCACATTGGCTCCCCGCTACTGCCACCTGGTACGGCAGCCCCGAAGGCGACGGCAGCGACGGTGGGGCATGTGGGTATGGTAATTTGGTGGACGTGAGGCCATTTAAGGCTAGAGTTGGGGCAGTGAGCCCAGTCCTATTCAAGGACGGCGAAGGGTGTGGCGCATGCTACAAAGTTCGCTGCTTGGATCGAACTATATGCTCCAAACGAGCCGTTACCATAATAGTTACCGACGAGTGTCCCGGTGGCTATTGTGCCAATGGCCGCACCCACTTCGACCTCAGTGGTGCCGCCTTTGGCCGCATGGCCGTTGCTGGCGCTCACAGTCGTCTTCGAGATCGTGGCGAACTCTCTGTCGTCTACAGACGGACTCCGTGTATGTATCGAGGGAAGAACATAGCATTTCATGTGAATGAAGGTTCTACGGATCATTGGCTATCTCTTTTGGTGGAGTTCGAGGATGGAGATGGAGATATTGGGTCTATGCAAATCAAACAAGCAAGTTCGAGCGAGTGGATGGAAATGGCACACGTGTGGGGCGCAACATGGTGCATAAATGGAGGGCCTTTACAGGGCCCATTTTCAGTGAAGCTTACAACATTATCCACAGCCAAAACTCTCTCAGCCAGAGATGTTATTCCAAAGAATTGGTCTCCAAAGGCTACTTATACTTCTCGCTTGAACTTTTTGTGA 828 51.69 MQLRRGHATFSSFGYLWSVTMLVNVVVMGKFLLVESTPLRNRTSASHWLPATATWYGSPEGDGSDGGACGYGNLVDVRPFKARVGAVSPVLFKDGEGCGACYKVRCLDRTICSKRAVTIIVTDECPGGYCANGRTHFDLSGAAFGRMAVAGAHSRLRDRGELSVVYRRTPCMYRGKNIAFHVNEGSTDHWLSLLVEFEDGDGDIGSMQIKQASSSEWMEMAHVWGATWCINGGPLQGPFSVKLTTLSTAKTLSARDVIPKNWSPKATYTSRLNFL 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7569037 7572495 - Maker00008065 Lcy4g0636 630162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0636 275 Gene3D - 33 171 IPR036908 -
Lcy4g0636 275 CDD DPBB_EXPB_N 48 171 - -
Lcy4g0636 275 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 189 270 IPR007117 -
Lcy4g0636 275 FunFam Expansin B3 34 172 - -
Lcy4g0636 275 PANTHER EXPANSIN-B3 27 274 - GO:0006949(PANTHER)|GO:0009506(PANTHER)
Lcy4g0636 275 SMART dpbb_1 84 166 IPR007112 -
Lcy4g0636 275 Pfam Lytic transglycolase 86 150 IPR009009 -
Lcy4g0636 275 FunFam Beta-expansin 3 173 275 - -
Lcy4g0636 275 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 176 IPR007112 -
Lcy4g0636 275 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576(InterPro)
Lcy4g0636 275 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Lcy4g0636 275 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576(InterPro)
Lcy4g0636 275 PRINTS Expansin/Lol pI family signature 217 231 IPR007118 GO:0005576(InterPro)
Lcy4g0636 275 PRINTS Expansin/Lol pI family signature 159 175 IPR007118 GO:0005576(InterPro)
Lcy4g0636 275 PRINTS Expansin/Lol pI family signature 256 270 IPR007118 GO:0005576(InterPro)
Lcy4g0636 275 SUPERFAMILY PHL pollen allergen 176 270 IPR036749 -
Lcy4g0636 275 Gene3D - 172 275 IPR036749 -
Lcy4g0636 275 Pfam Expansin C-terminal domain 178 259 IPR007117 -
Lcy4g0636 275 PRINTS Major pollen allergen Lol pI signature 148 163 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy4g0636 275 PRINTS Major pollen allergen Lol pI signature 196 211 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy4g0636 275 PRINTS Major pollen allergen Lol pI signature 246 263 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy4g0636 275 PRINTS Major pollen allergen Lol pI signature 126 141 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy4g0636 275 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy4g0636 275 PRINTS Major pollen allergen Lol pI signature 180 195 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy4g0636 275 SUPERFAMILY Barwin-like endoglucanases 41 175 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2114 Lcy-Chr11:44600080 Lcy4g0636 Lcy-Chr4:7569037 6.43E-79 transposed
Lcy4g0636 Lcy-Chr4:7569037 Lcy8g1533 Lcy-Chr8:41943956 2.18E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0636 K20628 - csv:101205324 474.937