Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy4g0649 | ATGGAGGAATCTCTGCTGGCAGGAGGAAGTAGCAGTAGCTCCAGCTCTCGACGTCAGATTCCTCACGTGAGGTTCAAGCGCCGCTCCGACGCCATCGCTTATGGCTCTGCGTACCAAAGAGCTGCTGCTCTCGTGGATCTGGCTGAAGATGGCATTGGTATACCCGAGAAAATTCTTGATCAGTCAAACTTTCAGAGTGCTGCAAGGCTCTACTTCATTTTTATTAAATTTGATATTATTTGGTCCTTAAATTTCTTTGCGCTGATAGTTCTAAATTTCTTTGAGAAACCCTTATGGTGCTCCAAATACGAGACACATTCTTGTAATGATAGGGAGTATTTCTTTCTTGGGCAGTTGCCATACTTAACAGCTGTTGAATCTCTAATATATGAGGCTGTGACTCTCTTAATACTCGTGATACACACTTTTTTTCCAATTTCGTATGAAGGTGCCCAGCTTTATTGGAAAAATCCGTTGAACCAGTTGAAGGTCATTTGCATAATTATTTTGGCTGCTGATTTTCTCATTTATGCTCTATATTTGTCGCCGGTGGCCTTTGATTATCTTCCATTCAGAGTTGCACCATATATAAGAGTTGTCTTTTTCATCATGAATATCAGGCATCTACGGGAGAGCATCATCATCCTGGCTGGAATGCTTGGAACATACTTGAATGTCTTGGCTCTAGGGCTTTTGTTTCTTCTGTTTTCCAGCTGGTTGGCATATGTTATTTTTGAGGATACACAGCAGGGGAAAATAATATTTACTTCTTTTGGAGCCACATTATATCAAATGTTTATTTTGTTCACAACATCCAATAATCCAGATGTTTGGATACCTGCCTACAAGGCATCTCGTTGGTATTGCCTCTTTTTTGTTCTTTATGTGTTGTTGGGAGTTTACTTCGTCACAAACTTGATTCTTGCTGTTGTATACGATAGCTTTAAAAGTCAGCTTGCTAAACAAATTTCTGAGATGGACCGCTTGAGGAAAAATATATTGGCCAAAGCTTTTAGTCTTATGGATACTAATAACGTTGGATTTATCAATAAAGAGCAGTGCCTTATACTTCTTGAAGAACTTAACAGATACAGGACTTTGCCGAAAATATCAAAGGATGATTATGAGTTAATATTTGATGAGCTGGATGACAGTCATGATTTTAAGATTAATATGAATGAGTTTGCTGATCTTTGCAATGCTATAGCCTTGAAGTTCCAGAAGGAGGACATTCCTTCATGGTTTGAAGGGTATCCTTCGATCTACCATTCAGATTTTTCAAAAAAGTTGAAAGTATTTGTGCGGAGCCCCAAATTTGGATATGCTGTATCCTTTATCCTCATACTGAACCTGGTTGCTGTTATTATTGAAACAACTCTTGATATAGAAAACAATGTTGGTCAGAAAGCATGGCAAGAACTTGAGTTTGTATTTGGTTGGATATATGTAGTTGAAATGGGTCTAAAAATCTACGCGTTTGGGTTTATGAATTATTGGAGAGATGGGCAAAATCAGTTTGATTTCATTGTCACGTGGATTATAGTGATTGGAGAAACTATAACTTTTGTGGCACCTAGTGGACTAACTTTTCTTTCAAATGGAGAATGGATTCGCTACCTTCTGATAGCAAGAATGTTACGCCTGATAAGGCTCCTAATGCATGTCCAGCAATATCGAGCATTTCTTGCTACCTTTTTAACTCTCATCCCTAGTTTGATGCCATATCTAGGAACTATTTTCTGTGTCCTCTGTCTTTATTGCACTCTTGGTGTGCAGGTCTTTGGAGGAATTGTTAATGCTGGAAATGTCAATTTGCCTAAGACTGATCTGGATGATGATGACTACCTACTTTTCAATTTCAACGACTATCCTAATGGCATGGTGACTCTCTTTAATTTGCTAGTTATGGGAAACTGGCAAGTCTGGATGCAGGTTGTAGCTTTTGTCTTGGAGGCATTCTTTGCTGAATTGGATATTGAATCTTCAGAAAATGGTGAAGAACAGGATCAGGACGGAGATAGTAGAAAGGATCGTCGACGTTTCGTTGGCACAAAAACTCGGAGCCGCAAAGTTGACATTCTTCTCCATCATATGTTGAGTGCAGAGTTGGATAACAAGGATTCCGATTAG | 2130 | 39.06 | MEESLLAGGSSSSSSSRRQIPHVRFKRRSDAIAYGSAYQRAAALVDLAEDGIGIPEKILDQSNFQSAARLYFIFIKFDIIWSLNFFALIVLNFFEKPLWCSKYETHSCNDREYFFLGQLPYLTAVESLIYEAVTLLILVIHTFFPISYEGAQLYWKNPLNQLKVICIIILAADFLIYALYLSPVAFDYLPFRVAPYIRVVFFIMNIRHLRESIIILAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTQQGKIIFTSFGATLYQMFILFTTSNNPDVWIPAYKASRWYCLFFVLYVLLGVYFVTNLILAVVYDSFKSQLAKQISEMDRLRKNILAKAFSLMDTNNVGFINKEQCLILLEELNRYRTLPKISKDDYELIFDELDDSHDFKINMNEFADLCNAIALKFQKEDIPSWFEGYPSIYHSDFSKKLKVFVRSPKFGYAVSFILILNLVAVIIETTLDIENNVGQKAWQELEFVFGWIYVVEMGLKIYAFGFMNYWRDGQNQFDFIVTWIIVIGETITFVAPSGLTFLSNGEWIRYLLIARMLRLIRLLMHVQQYRAFLATFLTLIPSLMPYLGTIFCVLCLYCTLGVQVFGGIVNAGNVNLPKTDLDDDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQVVAFVLEAFFAELDIESSENGEEQDQDGDSRKDRRRFVGTKTRSRKVDILLHHMLSAELDNKDSD | 709 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 7785958 | 7814859 | + | Maker00007944 | Lcy4g0649 | 630175 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy4g0649 | 709 | Gene3D | - | 560 | 656 | - | - | |
| Lcy4g0649 | 709 | Gene3D | - | 208 | 316 | - | - | |
| Lcy4g0649 | 709 | Coils | Coil | 312 | 332 | - | - | |
| Lcy4g0649 | 709 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 370 | 405 | IPR002048 | GO:0005509(InterPro) | |
| Lcy4g0649 | 709 | SUPERFAMILY | EF-hand | 325 | 417 | IPR011992 | - | |
| Lcy4g0649 | 709 | Gene3D | - | 317 | 400 | - | - | |
| Lcy4g0649 | 709 | SMART | efh_1 | 374 | 402 | IPR002048 | GO:0005509(InterPro) | |
| Lcy4g0649 | 709 | SMART | efh_1 | 333 | 361 | IPR002048 | GO:0005509(InterPro) | |
| Lcy4g0649 | 709 | SUPERFAMILY | Voltage-gated potassium channels | 436 | 633 | - | - | |
| Lcy4g0649 | 709 | FunFam | Two pore calcium channel protein 1 | 208 | 319 | - | - | |
| Lcy4g0649 | 709 | PANTHER | TWO PORE CALCIUM CHANNEL PROTEIN 1 | 645 | 707 | IPR044581 | GO:0000325(PANTHER)|GO:0005245(PANTHER)|GO:0005245(InterPro)|GO:0005774(PANTHER)|GO:0006816(PANTHER) | |
| Lcy4g0649 | 709 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
| Lcy4g0649 | 709 | FunFam | Two pore calcium channel protein 1 | 562 | 645 | - | - | |
| Lcy4g0649 | 709 | CDD | EFh | 334 | 398 | IPR002048 | GO:0005509(InterPro) | |
| Lcy4g0649 | 709 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Lcy4g0649 | 709 | Gene3D | - | 428 | 559 | IPR027359 | - | |
| Lcy4g0649 | 709 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 329 | 364 | IPR002048 | GO:0005509(InterPro) | |
| Lcy4g0649 | 709 | FunFam | Two pore calcium channel protein 1 | 429 | 561 | - | - | |
| Lcy4g0649 | 709 | Pfam | Ion transport protein | 439 | 645 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy4g0649 | 709 | Pfam | Ion transport protein | 129 | 318 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy4g0649 | 709 | Pfam | EF-hand domain pair | 334 | 398 | IPR002048 | GO:0005509(InterPro) |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy4g0649 | K16900 | - | csv:101206980 | 1255.35 |