Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0668 ATGGCTCCGTTCCCGTTCCCGTTTCCATTCTCGTCCTCGTCCTTCAAAGCCTTCATCTTGTTACTTCAGTTATCTTCTCTGTTTAACAGTCTAACCGCAAAACACGGAGGCATCACCACCCATAATGACCACCACCACCACCACCACCGTGTCCAATCACCGAACCCGAACCCAAACCCGAGACTCCACCAAGCATTCCTTGCCCTCCGAGCATGGAAAAAAGTCATTTACTCTGACCCAAAAAACCACACTACCAATTGGGTGGGGCCTTCAGTTTGCAACTACTTTGGAGTGTACTGTGCCCCAGCTCTCGATGACCCAAAACTCCAAGTCGTCGCCGGAATCGACTTAAACCACGGCGACATCGCCGGATTCCTCCCAAACGAATTGGGCCTTTTAACAGACCTTGCTCTGCTCCATCTCAACAGCAACCGTTTCTGCGGCATTTTGCCTCAATCTTTAGCCAATTTATCTCTTCTCTTCGAACTTGATTTGAGCAACAACAGATTCGTTGGCCCTTTTCCTTCTGTCATTCTCCACCTTCCCAAATTAACGTATCTCGACCTTCGATTCAACGAATTCGAAGGACCAATTCCGCCGGAACTCTTCAACAAAAGCCTGGACGCCATTTTCATCAACAGCAACCGTTTCACCAACATTATCCCTCGAAACATCGGCGGAAAATCAGCCTCTGTGATCGTCTTTGCCAACAACAATTTCAACGGCTGTCTCCCACCGACGATTGCAAGCTTTGCGAACAGTTTAGAAGAGCTTTTGTTGATCAACACTAGCTTATCGGGCTGTTTGCCTCAAGAAATTGGGTTTTTGTACAAATTGAAGGTTTTGGATGTGAGTTTTAACGAACTGGTGGGTCCTTTGCCTTACAGTTTAGCTGGGTTGGCTCAATTGGAGCAATTGAATTTGGCCCACAATTTGTTTACTGGGAATTTGTATGAAGGGATCTGTAACCTTCCAAATTTGGAGAATGTGACGGTTTCTTACAATTATTTCTGTGAGGAAGAGGGGATTTGCCGGAATTTGACGGCGAAAGGGATTGCTTTTGATGATCGTCGGAATTGTTTGCCGGAGAAGCCGTTGCAGAGGAGTAAGAAGGAGTGTAGTGCGGTGGTTGAGCATCCCGTTGACTGTTTTGAGCATCCGTGCGGCGGCGGCGGCGGTTATGGTTCTAATATTGCGGCGGTTCCGGCTTCTATGCCCATTTCTTCACCTTCTTCCGTTGTTGCCCCTACCCACTTGTGA 1260 47.78 MAPFPFPFPFSSSSFKAFILLLQLSSLFNSLTAKHGGITTHNDHHHHHHRVQSPNPNPNPRLHQAFLALRAWKKVIYSDPKNHTTNWVGPSVCNYFGVYCAPALDDPKLQVVAGIDLNHGDIAGFLPNELGLLTDLALLHLNSNRFCGILPQSLANLSLLFELDLSNNRFVGPFPSVILHLPKLTYLDLRFNEFEGPIPPELFNKSLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNFNGCLPPTIASFANSLEELLLINTSLSGCLPQEIGFLYKLKVLDVSFNELVGPLPYSLAGLAQLEQLNLAHNLFTGNLYEGICNLPNLENVTVSYNYFCEEEGICRNLTAKGIAFDDRRNCLPEKPLQRSKKECSAVVEHPVDCFEHPCGGGGGYGSNIAAVPASMPISSPSSVVAPTHL 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8106355 8107614 - Maker00007775 Lcy4g0668 630194

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0668 419 FunFam Leucine-rich repeat extensin-like protein 1 66 227 - -
Lcy4g0668 419 Pfam Leucine rich repeat 136 193 IPR001611 GO:0005515(InterPro)
Lcy4g0668 419 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 26 398 IPR051582 -
Lcy4g0668 419 Gene3D Ribonuclease Inhibitor 230 352 IPR032675 -
Lcy4g0668 419 Gene3D Ribonuclease Inhibitor 64 229 IPR032675 -
Lcy4g0668 419 Pfam Leucine Rich Repeat 278 300 IPR001611 GO:0005515(InterPro)
Lcy4g0668 419 Pfam Leucine Rich Repeat 302 324 IPR001611 GO:0005515(InterPro)
Lcy4g0668 419 SUPERFAMILY L domain-like 65 339 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0668 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1575 Lcy-Chr11:39566670 Lcy4g0668 Lcy-Chr4:8106355 5.70E-45 dispersed
Lcy4g0668 Lcy-Chr4:8106355 Lcy9g2147 Lcy-Chr9:46089140 1.23E-39 dispersed
Lcy4g0668 Lcy-Chr4:8106355 Lcy13g0725 Lcy-Chr13:10798525 4.26E-34 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy4g2157 . 73 242 Leucine-rich Repeat extension Gene Families AT1G62440 70.0 5.8e-42 170.2
Lcy2g0804 . 56 228 Leucine-rich Repeat extension Gene Families AT1G62440 68.8 7.6e-42 169.9
Lcy9g2147 . 61 400 Leucine-rich Repeat extension Gene Families AT1G62440 56.5 7.6e-42 169.9
Lcy9g2149 . 61 400 Leucine-rich Repeat extension Gene Families AT1G62440 56.5 7.6e-42 169.9
Lcy2g0804 . 1 400 Leucine-rich Repeat extension Gene Families AT4G13340 71.6 5.6e-66 250.0
Lcy4g2157 . 15 420 Leucine-rich Repeat extension Gene Families AT4G13340 71.3 5.2e-64 243.4
Lcy9g2147 . 22 218 Leucine-rich Repeat extension Gene Families AT4G13340 63.5 7.4e-42 169.9
Lcy9g2149 . 22 218 Leucine-rich Repeat extension Gene Families AT4G13340 63.5 7.4e-42 169.9
Lcy4g2157 . 48 420 Leucine-rich Repeat extension Gene Families AT3G24480 73.9 2.4e-70 263.8
Lcy2g0804 . 19 395 Leucine-rich Repeat extension Gene Families AT3G24480 72.8 4.2e-70 263.1
Lcy9g2147 . 22 218 Leucine-rich Repeat extension Gene Families AT3G24480 67.7 5.0e-47 186.4
Lcy9g2149 . 22 218 Leucine-rich Repeat extension Gene Families AT3G24480 67.7 5.0e-47 186.4
Lcy11g1575 . 15 372 Leucine-rich Repeat extension Gene Families AT3G22800 65.5 3.5e-58 223.4
Lcy2g0804 . 68 396 Leucine-rich Repeat extension Gene Families AT3G22800 62.2 8.9e-38 155.6
Lcy4g0668 . 61 388 Leucine-rich Repeat extension Gene Families AT3G22800 60.5 1.5e-37 154.8
Lcy11g1575 . 11 372 Leucine-rich Repeat extension Gene Families AT5G25550 61.6 7.9e-41 165.6
Lcy4g2157 . 59 418 Leucine-rich Repeat extension Gene Families AT5G25550 63.0 7.4e-39 159.1
Lcy2g0804 . 42 400 Leucine-rich Repeat extension Gene Families AT5G25550 61.5 9.7e-39 158.7
Lcy9g2147 . 50 397 Leucine-rich Repeat extension Gene Families AT5G25550 58.0 1.4e-37 154.8
Lcy9g2149 . 50 397 Leucine-rich Repeat extension Gene Families AT5G25550 58.0 1.4e-37 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012968 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 28