Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0673 ATGACCACCGGCAGAGAAATTCTCCACAAAATGAAGGTGAAGGCAGGGTTTCGTTCGTCTGCGGCGGATGCAGGGAAAGGCAAAGGCAAAGTGACGAAGAATAATAATAATAATAATATAAGCCATGGAAGCCATTTGGTGAAGGGCAAAACCAACCATCCCATGGAAGATTATTTGGTCTCCGATTTCAAGCGAGTCAACGAACATGATTTGGGTTTATTTGCAATTTTCGATGGCCATTTGGGACATGATGTTGCAAATTTCTTGCAAAATAATCTCTTTCATAACATCCTTAAAGAGGCTGATTTCTGGAGCGAAACAAGAAAGGCCATAAAAAGAGCTTACAAAAAAACAGACGAAGAAATATTGGATAAAGTGAAGCAACTGGGAAGAGGAGGATCGACGGCTGTAACCGCCATATTGATCGACGGCCAGAAACTCATCGTTGCCAACGTCGGAGATTCCAGAGCCGTTTTGTGCAAAAACGGCGTCGCCGAGCAACTTTCCGTTGACCACGAACCCAGTAAAGAAAAACGTGAAATCGAAAGCCGTGGTGGCTTTGTATCAAATCTTCCAGGGGATGTTCCACGTGTCGACGGTCAATTGGCTGTGGCTAGGGCGTTTGGAGATAAGAGCTTAAAACTCCACCTCAGCTCAGAACCTGACGTGGAAGTCAAAACCGTGGATGAAACTACAGAGTTCATGATTTTGGCTAGTGATGGCATATGGAAGGTAATGACAAACAAAGAGGCAGTAGAATCTATTAGACACATAAAGGACGCGAACTTAGCGGCCAAACGACTTATCGACGAAGCAGTATCTAGAAATAGCAAGGACGACATATCGTGCATTGTTGTTAGGTTTCATTAA 870 43.91 MTTGREILHKMKVKAGFRSSAADAGKGKGKVTKNNNNNNISHGSHLVKGKTNHPMEDYLVSDFKRVNEHDLGLFAIFDGHLGHDVANFLQNNLFHNILKEADFWSETRKAIKRAYKKTDEEILDKVKQLGRGGSTAVTAILIDGQKLIVANVGDSRAVLCKNGVAEQLSVDHEPSKEKREIESRGGFVSNLPGDVPRVDGQLAVARAFGDKSLKLHLSSEPDVEVKTVDETTEFMILASDGIWKVMTNKEAVESIRHIKDANLAAKRLIDEAVSRNSKDDISCIVVRFH 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8138087 8141440 + Maker00007828 Lcy4g0673 630199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0673 289 ProSiteProfiles PPM-type phosphatase domain profile. 41 288 IPR001932 -
Lcy4g0673 289 Gene3D - 23 289 IPR036457 -
Lcy4g0673 289 SMART PP2C_SIG_2 46 288 IPR001932 -
Lcy4g0673 289 Pfam Protein phosphatase 2C 52 281 IPR001932 -
Lcy4g0673 289 MobiDBLite consensus disorder prediction 19 49 - -
Lcy4g0673 289 CDD PP2Cc 40 288 IPR001932 -
Lcy4g0673 289 SMART PP2C_4 31 286 IPR001932 -
Lcy4g0673 289 FunFam Probable protein phosphatase 2C 39 31 289 - -
Lcy4g0673 289 PANTHER PROTEIN PHOSPHATASE 35 286 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy4g0673 289 MobiDBLite consensus disorder prediction 30 46 - -
Lcy4g0673 289 SUPERFAMILY PP2C-like 33 289 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0673 Lcy-Chr4:8138087 Lcy6g0090 Lcy-Chr6:846158 8.90E-56 dispersed
Lcy10g1302 Lcy-Chr10:35901246 Lcy4g0673 Lcy-Chr4:8138087 5.59E-43 transposed
Lcy10g2367 Lcy-Chr10:47252013 Lcy4g0673 Lcy-Chr4:8138087 1.40E-35 transposed
Lcy13g0387 Lcy-Chr13:4414263 Lcy4g0673 Lcy-Chr4:8138087 1.13E-35 transposed
Lcy13g1745 Lcy-Chr13:36385780 Lcy4g0673 Lcy-Chr4:8138087 5.45E-33 transposed
Lcy1g0114 Lcy-Chr1:986786 Lcy4g0673 Lcy-Chr4:8138087 8.88E-110 transposed
Lcy6g0368 Lcy-Chr6:3404120 Lcy4g0673 Lcy-Chr4:8138087 4.04E-48 transposed
Lcy6g0369 Lcy-Chr6:3407661 Lcy4g0673 Lcy-Chr4:8138087 1.03E-33 transposed
Lcy9g1733 Lcy-Chr9:42519459 Lcy4g0673 Lcy-Chr4:8138087 7.51E-63 transposed
Lcy9g1917 Lcy-Chr9:44161374 Lcy4g0673 Lcy-Chr4:8138087 2.29E-44 transposed
Lcy4g0673 Lcy-Chr4:8138087 Lcy9g1311 Lcy-Chr9:37855499 6.56E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0673 K17506 - csv:101211399 492.656