Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0674 ATGGGCAGCGTTTGTGCTGACAACCAGAAATTTCACTTTCACTTTCAATTTCCTTCTTCTTCTTCTGATTCTTGTTCTTCTGATTTTGTTTCTGAGAGGACTCCTATTCTCAAGGACATCAACGTTCCGCCGAGGAAGCTTCTCGCGGCGCGACGTGACAACGGCGAAATGTGTTCTGATTCGCCTCGATTTTCGTTTGCTGTTGAATCGCTTTTGCAGAAGTTTTTGCCGTTCAACGGCGAGGATGAGGCGGACGAGGACGGCGATCCTTATTCGTCCGATCATTTTCGGATGTATGAGTTTAAGGTGAGGCGGTGTACTCGTAGTCGGAGCCATGATTGGACGGATTGTCCGTTTGCTCATCCTGGAGAGAAGGCGCGGCGCCGGGATCCTCGCCGGTTTCATTACTCCGGCACGATGTGTCCGGAGTTCCGGCGCGGCGGTTGCGGCCGTGGTGATGGATGTGAGTTCGCTCATGGAGTTTTTGAGTGCTGGCTTCATCCGGCGAGGTATCGGACTGAGGCTTGTAAAGATGGAAAGAACTGTAAGAGGAAGGTTTGTTTCTTTGCTCATTCGCCTCGTGAGCTTCGTCTTTTACCGCCAGTAGGTAATTTTCAAGGCGGCGGCGGTGGCTCTTGTTCTTCGCCGAATAAGAAGAGTTCTAATCTCAGATCGGCCGCTGGTACTAATCACTGCTGTCTGTTTTGTCATTGCGGCGGAGCCGCCACCTCCTCGCCGACGTCAACGCTTTTCGGAATGTCTCATCTCTCTCCGCCGCACTCGCCGCCTCTCTCGCCGGGAAAACCTCGCTCAATGAATGGATTTTCGCCGATTTCGAGGTATAATCCTGATCAGTCTAAATTAAATGGAGTTTTGAGCTATAAAGATGCACTGACCGAGCTCATGAGCTCTATTGAATCCATGAATATCGACGACGCTAATGCCACTCTAGCCGCCGCTGCCGCCATCTCCGCCCCTAGACCAACGCCGCCTTGGATCGATGTTTCATCCCTCAACGCCGAAGATCAACTGCAGTTTATTCTCTCACCTTCCACTCCAAATCTCTCCGCCGCGCCAGCGAACTTTTCCGGCGAGAACAAAGGTACCGGCAACAATGGATGGGCCTCCGCCTCCGGTCCCGATCTCGGATGGGTTAACGATCTGCTGATGTAA 1173 52.26 MGSVCADNQKFHFHFQFPSSSSDSCSSDFVSERTPILKDINVPPRKLLAARRDNGEMCSDSPRFSFAVESLLQKFLPFNGEDEADEDGDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVGNFQGGGGGSCSSPNKKSSNLRSAAGTNHCCLFCHCGGAATSSPTSTLFGMSHLSPPHSPPLSPGKPRSMNGFSPISRYNPDQSKLNGVLSYKDALTELMSSIESMNIDDANATLAAAAAISAPRPTPPWIDVSSLNAEDQLQFILSPSTPNLSAAPANFSGENKGTGNNGWASASGPDLGWVNDLLM 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8149102 8150274 + Maker00007851 Lcy4g0674 630200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0674 390 ProSiteProfiles Zinc finger C3H1-type profile. 136 162 IPR000571 GO:0046872(InterPro)
Lcy4g0674 390 PANTHER UNKEMPT FAMILY MEMBER 60 329 IPR045234 -
Lcy4g0674 390 Gene3D - 135 198 - -
Lcy4g0674 390 SMART c3hfinal6 135 161 IPR000571 GO:0046872(InterPro)
Lcy4g0674 390 SMART c3hfinal6 170 193 IPR000571 GO:0046872(InterPro)
Lcy4g0674 390 MobiDBLite consensus disorder prediction 252 271 - -
Lcy4g0674 390 FunFam Zinc finger CCCH domain-containing protein 66 93 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0461 Lcy-Chr11:9861668 Lcy4g0674 Lcy-Chr4:8149102 9.81E-126 dispersed
Lcy4g0674 Lcy-Chr4:8149102 Lcy9g1994 Lcy-Chr9:44798174 1.76E-65 dispersed
Lcy4g0674 Lcy-Chr4:8149102 Lcy2g0889 Lcy-Chr2:8141815 8.70E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19961 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0674 K23047 - csv:101211149 587.03