Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0675 ATGATGAAGCGTTATGTTTACATCAATGATGATGAAGCATCAAATGATCTTTATTGCGATAACCGCATTTCAAACAGGAAATACACATTATTGAACTTTCTCCCAAAAAATTTATGGGAACAGTTCAGCCGCTTCATGAACCAATACTTTTTGTTAATTGCATGCCTACAGTTATGGCCGCTTATAACTCCAGTAAATCCCGCCAGTACATGGGGTCCACTCATCTTCATTTTTGCTGTATCTGCAACAAAAGAGGCATGGGATGATTACAATAGATATTTGTCAGACAAAAAAGCAAATGAGAAAGAAGTTTGGGTTGTGAAGCAGGGTACTAGAAAAATTATTCAAGCACAAGATATTCATGTTGGTAATTTAGTATGGCTCAGGGAGAATGATGAAGTGCCTTCTGATCTTGTTTTGATTGGTACCTCTGATCCTCAAGGAATTTGCTATATAGAGACATCTGCCCTTGATGGAGAAACTGACTTGAAGACAAGGGTCATACCCTCAGCCTGCATGGGAATAGATTTTGATCTATTAAACAAGATCAAGGGAGTTATAGAGTGCCCTAAACCAGATAAGGATATTAGAAGATTTGATGCAAACATTCGGCTATTTCCTCCTTTCATTGATAATGATGTGTGCCCCTTGACTGTAAAAAACACAATTCTTCAGTCGTGTTACGTGCGGAACACAGAGTGGGTCTGTGGAGTCGCCGTCTACACAGGCAAGTTCCTTTGCATGAGAGATTCCAAAATAGCATACGTGTATGAGCCAAACTTTTTAACATATAGCTCTATTCAATTCTCTTTGGTTTGCTTCGCATGTTTGATCTTTTCAGGCAATGAAACCAAGCTTGGAATGAGCAGGGGTGTCCCAGAACCAAAACTTACAGCTATGGATGCAATGATTGACAAGTTAACTGGTGCTATATTTGTTTTTCAACTTGTGGTGGTTGTTGTTCTCGGTATAGCTGGTAATGTGTGGAAGGATTCTGAAGCCAGAAAGCTATGGTATGTGCAACATCCAGACGAAGGTCCATGGTATGAGCTCCTGGTCATCCCTCTTCGGTTTGAGCTTCTTTGTTCAATCATGATACCCATTTCAATTAAGGTGTCTCTGGATCTTGTAAAGAGCTTATATGCAAAATTTATTGATTGGGACTATGATATGGTTGACCGTGAGACTGGTATTCCTTCCCATGCTACGAATACAGCAATAAGTGAGGACCTCGGACAAGTCGAATACATTTTGACGGATAAAACCGGTACCCTCACTGAAAATAAGATGATCTTCAGGAGATGTTGTATCAGTGGCATTTTTTATGGAAATGAAAATGGAGATGCCCTGAAAGATAAAAAGTTGCTCAATGCTATTGCAAGCAGCTCTCCAGATGTTATTAGATTTCTCACAATTATGGCAATATGCAATACAGTGGTGCCTACAAAAAGCAAAAGTGGAACTATTTTGTACAAGGCACAGTCACAGGATGAGGATGCTCTCGTGAATGCTGCTGCTTTTTTGCATATGGTATTTGTCAATAAGAATGCTAATATTCTTGAAATTCAGTTTAATGGAATGCTTAATAGATATGAGCTCCTAGATACTCTGGAGTTCACATCTGAACGAAAAAGAATGTCTGTGGTCGTTAAAGATTGTCAGAATGGGAAGATTGTCCTCCTGTCAAAAGGAGCAGATGAAGCTATACTTCCTCATGCTTATGCCGGCCAGCAAACAAGAACATTTATTGAAGCCGTGGATCAATATGCACAACTGGGGCTCCGCACATTATGTCTGGCTTGGCGTGAATTAGAGGAAGATGAGTATCGAGAATGGGCTTTCATGTTTAAGGAGGCTAATAGCACATTGGTTGATAGGGAGTGGAGGTTAGCTGAAGTTTGCCAAAGATTAGAGCGCAATTTTGAAGTCCTTGGAGTTACTGCTATAGAAGATAGGCTACAGGATGGAGTCCCTGAAACAATTGAAACATTAAGAAGAGCAGGAATAAATTTCTGGATGTTGACCGGAGACAAGCAGAATACTGCCATTCAAATAGCTCTTCTATGCAACTTTATTTCACCAGAGCCCAAAGGACAGTTATTATTAATTGATGGAAAAACAGAGGATGAAGTTTGTAGAAGTTTGGAGAGAGTTGTTCTAACTATGAAGACCACGACCTCAGAACCCAAGGATGTTGCTTTCGTTGTTGATGGCTGGGCTCTTGAAATTGCTCTCAAGAATTATCGTAGGGCATTCACTGAATTAGCAATACTATCAAGAACTGCAATATGTTGTCGTGTGACTCCATCACAGAAGGCTCAGCTTGTGGAACTCTTAAAATCATGTGATTATAGAACACTGGCAATTGGAGATGGTGGGAATGATGTGAGGATGATACAACAAGCTGACATTGGAGTTGGCATTAGTGGAAGAGAAGGACTGCAAGCAGCTAGGGCAGCTGATTATAGTATTGGAAGTGTCTCTGGGACCAGTCTATTTAATTCTGTTAGCTTAATGGCTTACAATGTTTTCTACACCAGCATTCCTGTATTAGTTAGTGTCCTCGACAAAGATCTCAGCGAAGAAACAGTAATGCAACATCCTCAGATTTTATTCTACTGCCAAGCTGGGAGGCTTTTAAATCCCAGCACATTTGCTGGATGGTTTGGTCGATCTCTATTTCATGCTGTTGTGGTGTTTGTAATTAGCATACATGCCTACGCTAATGAAAAGAGTGAAATGGTGGAGGTTTCAATGGTGGCTCTATCTGGGTGCATTTGGTTACAGGCTTTTGTAGTGACTTTGGAGACCAATTCATTTACAATGTTGCAACATATGGCCATATGGGGGAATTTAGCTGCTTTCTACGTTATCAATTGGATCTTCAGTGCCATTCCTACATCTGGGATGTATACAATAATGTTCCGCTTATGCGGACAACCATCTTACTGGATAACCATATTTCTGATAGTAGGCGTGGGAATGGGGCCACTTCTAGCTATCAAGTACTTCAGATACACATACAGACCAAGCAAAATCAACACTCTTCAGCAGGCAGAACGTTTGGGTGGGCCGATCATGTCGCTGAAAAACATCGAGCACCAGCCTCGGCCCATTGAGAAAGAAATATCTCCACTGTCAATAACTACAACAACTACTCAGCCCAAGAACAGAAATACAGTTTACGAACCTCTTCTGTCAGACTCTCCTCCAAATGCCACTAGAAGATCTCTGACATCAGGACCATCTTTTGATTTCTTTCAGACACCGCCCAGTTATTCAAGAAATAAGGATAACTGA 3300 40.7 MMKRYVYINDDEASNDLYCDNRISNRKYTLLNFLPKNLWEQFSRFMNQYFLLIACLQLWPLITPVNPASTWGPLIFIFAVSATKEAWDDYNRYLSDKKANEKEVWVVKQGTRKIIQAQDIHVGNLVWLRENDEVPSDLVLIGTSDPQGICYIETSALDGETDLKTRVIPSACMGIDFDLLNKIKGVIECPKPDKDIRRFDANIRLFPPFIDNDVCPLTVKNTILQSCYVRNTEWVCGVAVYTGKFLCMRDSKIAYVYEPNFLTYSSIQFSLVCFACLIFSGNETKLGMSRGVPEPKLTAMDAMIDKLTGAIFVFQLVVVVVLGIAGNVWKDSEARKLWYVQHPDEGPWYELLVIPLRFELLCSIMIPISIKVSLDLVKSLYAKFIDWDYDMVDRETGIPSHATNTAISEDLGQVEYILTDKTGTLTENKMIFRRCCISGIFYGNENGDALKDKKLLNAIASSSPDVIRFLTIMAICNTVVPTKSKSGTILYKAQSQDEDALVNAAAFLHMVFVNKNANILEIQFNGMLNRYELLDTLEFTSERKRMSVVVKDCQNGKIVLLSKGADEAILPHAYAGQQTRTFIEAVDQYAQLGLRTLCLAWRELEEDEYREWAFMFKEANSTLVDREWRLAEVCQRLERNFEVLGVTAIEDRLQDGVPETIETLRRAGINFWMLTGDKQNTAIQIALLCNFISPEPKGQLLLIDGKTEDEVCRSLERVVLTMKTTTSEPKDVAFVVDGWALEIALKNYRRAFTELAILSRTAICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGSVSGTSLFNSVSLMAYNVFYTSIPVLVSVLDKDLSEETVMQHPQILFYCQAGRLLNPSTFAGWFGRSLFHAVVVFVISIHAYANEKSEMVEVSMVALSGCIWLQAFVVTLETNSFTMLQHMAIWGNLAAFYVINWIFSAIPTSGMYTIMFRLCGQPSYWITIFLIVGVGMGPLLAIKYFRYTYRPSKINTLQQAERLGGPIMSLKNIEHQPRPIEKEISPLSITTTTTQPKNRNTVYEPLLSDSPPNATRRSLTSGPSFDFFQTPPSYSRNKDN 1099
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8154723 8166839 - Maker00007815 Lcy4g0675 630201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0675 1099 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 1010 IPR023298 -
Lcy4g0675 1099 SFLD p-type atpase 401 826 IPR044492 -
Lcy4g0675 1099 ProSitePatterns E1-E2 ATPases phosphorylation site. 420 426 IPR018303 -
Lcy4g0675 1099 Gene3D - 485 621 IPR023299 GO:0000166(InterPro)
Lcy4g0675 1099 FunFam Phospholipid-transporting ATPase 641 828 - -
Lcy4g0675 1099 Gene3D - 641 826 IPR023214 -
Lcy4g0675 1099 NCBIfam HAD-IC family P-type ATPase 756 820 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy4g0675 1099 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 425 612 IPR023299 GO:0000166(InterPro)
Lcy4g0675 1099 PRINTS P-type cation-transporting ATPase superfamily signature 667 677 - -
Lcy4g0675 1099 PRINTS P-type cation-transporting ATPase superfamily signature 153 167 - -
Lcy4g0675 1099 PRINTS P-type cation-transporting ATPase superfamily signature 789 808 - -
Lcy4g0675 1099 PRINTS P-type cation-transporting ATPase superfamily signature 418 432 - -
Lcy4g0675 1099 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 3 825 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Lcy4g0675 1099 Pfam haloacid dehalogenase-like hydrolase 625 803 - -
Lcy4g0675 1099 Pfam Phospholipid-translocating P-type ATPase C-terminal 825 1011 IPR032630 -
Lcy4g0675 1099 Gene3D - 76 249 - -
Lcy4g0675 1099 SUPERFAMILY Calcium ATPase, transduction domain A 101 244 IPR008250 -
Lcy4g0675 1099 SUPERFAMILY HAD-like 407 827 IPR036412 -
Lcy4g0675 1099 SFLD C1.7: P-type atpase like 401 826 - -
Lcy4g0675 1099 FunFam Phospholipid-transporting ATPase 488 631 - -
Lcy4g0675 1099 Pfam Phospholipid-translocating ATPase N-terminal 6 71 IPR032631 -
Lcy4g0675 1099 MobiDBLite consensus disorder prediction 1046 1099 - -
Lcy4g0675 1099 FunFam Phospholipid-transporting ATPase 76 254 - -
Lcy4g0675 1099 Pfam Cation transport ATPase (P-type) 474 572 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0675 Lcy-Chr4:8154723 Lcy7g0397 Lcy-Chr7:3379038 1.69E-137 dispersed
Lcy4g0675 Lcy-Chr4:8154723 Lcy5g2449 Lcy-Chr5:47270391 5.44E-145 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0675 K01530 - csv:101210900 1993.39