Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0676 ATGGTTGCCAAAGACAAATCCACCACCGCCAAGAAGCTTCCCTCTCTCTGCAACGCCGACAGCAATGGCAAGGAACTCCATTTCCGCGGCGTTCGAAAGAGGCCCTGGGGCCGGTACGCCGCCGAGATCCGAGATCCTGGCAAGAAAAGCCGCGTTTGGCTCGGCACCTTCGATACGGCGGAGGAGGCGGCGCGTGCTTACGACACCGCCGCGCGCCAGTTCCGCGGCGCTAAGGCCAAGACCAATTTCCCTCTGCCGGAAGAGCTGATCGACGTTTCTCCTCACAAGATCAACCAAAGCCCTAGCCCTAGCAGCACCGTCGAGTCCTCTTCCTCCTCCAGCCAAGAAAAAACTCCCTCGCCGGAGATCGTCCGCAGCTACGGCGTCGCACGAACTTTCCCGTTCATTCAGCCGCAATTTTTGCATCAGGTCGGTTCCGCCGCCGCGGCCGGCGGCGGCGTTCGTCCAGTTTTGTTTATGGATGCTTTCGGTAGACCGGAGTTCGTGGCTCATGGCTATCCCATACGGTTCGATCCGGCGACGGTGGATTTGACGGCGAGGCTCGCCGGCGGGATCCAGAGCGATTCGGACTCATCGTCGGTGGTTGACTGCCGGCCGGCGAAGGAAATTCTGAATCTCGATCTTAATCTCGCTCCGCCGGTGGACGCTTGA 672 60.42 MVAKDKSTTAKKLPSLCNADSNGKELHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDTAARQFRGAKAKTNFPLPEELIDVSPHKINQSPSPSSTVESSSSSSQEKTPSPEIVRSYGVARTFPFIQPQFLHQVGSAAAAGGGVRPVLFMDAFGRPEFVAHGYPIRFDPATVDLTARLAGGIQSDSDSSSVVDCRPAKEILNLDLNLAPPVDA 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8192776 8193447 - Maker00007799 Lcy4g0676 630202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0676 223 MobiDBLite consensus disorder prediction 95 121 - -
Lcy4g0676 223 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g0676 223 MobiDBLite consensus disorder prediction 1 22 - -
Lcy4g0676 223 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g0676 223 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g0676 223 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 144 - -
Lcy4g0676 223 SMART rav1_2 27 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g0676 223 Gene3D AP2/ERF domain 27 85 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g0676 223 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677(InterPro)
Lcy4g0676 223 CDD AP2 27 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g0676 223 MobiDBLite consensus disorder prediction 92 122 - -
Lcy4g0676 223 FunFam Ethylene-responsive transcription factor 2 27 85 - -
Lcy4g0676 223 Pfam AP2 domain 27 76 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0676 Lcy-Chr4:8192776 Lcy8g1597 Lcy-Chr8:42591582 2.01E-32 dispersed
Lcy4g0676 Lcy-Chr4:8192776 Lcy5g1860 Lcy-Chr5:41458720 2.68E-47 wgd
Lcy4g0676 Lcy-Chr4:8192776 Lcy9g1319 Lcy-Chr9:37952784 6.36E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19962 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0676 K09286 - csv:101210659 300.441