Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0684 ATGATTTCGAGATCGTACACAAATCTTTTAGATTTGGCTTCTGGAAATTTTCCAGCAATGGAAATGAAAAGGAAGCGGTTTCCTCGGGTCATGACTGTTCCGGGTAATGTGGCTGAGCTTGATGACGATCAAGCCTACAGTGTGACATCTGAAAACCCATCATCAATTTCCTCAGATCGGATGATAATTGTAGCAAACCAGCTTCCTTTAAGAGCAAAGCGAAGGGAAGATGATAATTCTTGGAGTTTCAGTTGGAACGAAGATTCTTTGCTTTTGCAGCTTAAAGATGGTTTACCAGAAGATATGGAGGTTCTTTATGTTGGTTCGCTGAAAGTTGATATCCAATCAGACGAGCAAGATGAGGTCTCCCAGATTTTGCTGGAGAAATTTAAGTGTATTCCTACATTTTTGCCTCCTCATATTTTGGAAAAGTTTTATGATGGTTTCTGCAAGAGGCATTTGTGGCCTCTTTTTCATTATATGCTGCCATATTCTGCTGATCAGAAGGGTCGATTTGATCGCTCCATGTGGGAAGCCTATGTATCAGCAAATAAGTTATTTTTCCAGAAAGTAGTTGAGGTCATCAACCCAGATGATGACTATATCTGGATCCATGATTACCATTTGATGGTATTGCCCACTTTCTTGAGGAGACGCTTTAACAGAGTTAAAATGGGATTTTTCCTTCATAGTCCATTTCCTTCATCTGAGATCTACCGCACCCTTCCTGTCAGAGAAGAGATTCTCAAGGCATTACTTAACTCTGACATCATTGGATTTCACACTTTTGATTATGCTCGTCATTTCCTTTCTTGTTGCAGCCGAATGTTGGGTTTGGAATACCAGTCTAAGAGAGGCTATCTTGGATTGGAATACTATGGCAGGACGATTGGGATAAAGATAATGCCTGTTGGTATTCATATGAGTCGGATTGAATCCGTGATGAAACTGGCAGACGAGGATGCTAAGACGAGGGAACTCACCCAGCAATTTGCAGGGAAGACGGTATTGCTTGGTGTTGATGATTTGGACATTTTCAAAGGTATCAACTTGAAGTTGTTAGCTATGGAACAGGTACTAAAGCAACATCCAAAATGGCAGGGAAAGGCTGTACTGATCCAAATTGTAAATCCTGCCAGAGGCAAGGGCAGAGATTTACAAGAAATAGAAGATGAAATAAAAGAAAGCTGCGCAAGGATCAACAAGGAATATGGGCATCCTGGCTATGAGCCAATAGTACTTCTCGATAGGCATGTGCCGATTACTGAAAGGGTTGCTTATTATAGCATTGCTGAGTGCGTAGTTGTCACTGCTGTTAGAGATGGAATGAATCTAACTCCTTATGAGTACGTTGTCTGTAGACAGGGAATATCCACCTCTCAAGAATGTTTAAACTTCAGCGGGCCAAAAAAGAGCATGCTTGTCATATCCGAATTTATTGGATGTTCTCCATCACTAAGTGGAGCATTTCGTATCAACCCATGGAATGTTGAAAGGACAGCGGAGGCTTTGAATGAAGCAATCTCAATGGCTGATACGGAGAAACAATTGCGACATGAGAAGCATTACCGTTATGTTGCTACCCACGATGTGGCTTATTGGTCTCGTAGTTTCTTGCAAGATATGGAGAGAACTTGCTCAGATCATTTCAGGAGACGATGTTGGGGAATTGGTTTTAGTTTCGGTTTCAGGGTTGTAGCTCTTGATCCCAATTTCAGAAAACTTTCAGTTGATGCCATTGTATCGACTTACAGTAGGGCTGAAAGTCGGGCCATTCTTTTGGACTATGATGGCACTGTGATGCCTCAAAACTCCATAAATAAGTCACCGAGTGCACAGGTTATCTCTATCCTTAACACGCTTTGTGCTGATGCAAAAAATGTAGTTTTCATTGTGAGTGGACGAGGGAGGGACAGCTTAAGCAAGTGGTTTCGCCCGTGCAAGAAGCTTGGAATTGCAGCAGAACATGGATACTTTTTGAGGCAGTCACAAAATGAGGAGTGGAAGATCTGCGGCCAAAGTTCTGATTTTGGATGGATGCAGATTGCCGAACCTGTGATGAAATTATATACCGAGGCGACTGATGGTTCTTCTATTGAAAGAAAGGAAAGTGCTTTGGTCTGGCAGTATCGAGATGCAGATCCTGGTTTTGGATCTTCCCAGGCAAAGGAGATGTTGGATCATTTAGAGAGTGTTTTGGCAAACGAACCTGTTGCAGTCAAGAGCGGCCAATTCATCGTAGAAGTGAAACCGCAGGGTGTTACCAAAGGCCTAGTGGCTGAAAAGATCTTTTCATCAATGGCGGAGGATGGAAAACTTGCCGACTTTGTGTTGTGTATTGGCGATGACAGATCTGATGAGGACATGTTTGAAATAATTGGCAATGCATTGTCCAGTAATATTCTTTCTCCAACGGCATCAGTTTTTGCCTGCACTGTCGGACAAAAGCCAAGCAAAGCCAAATATTATTTAGATGATACAGCTGAAGTGATAAGCATGCTAGAATACCTGGCTGAAGCTTCTAGCCCATTGCCATCCTCCGACGATGAAAAAGGTGAAGCCGAAGGTTGA 2571 42.43 MISRSYTNLLDLASGNFPAMEMKRKRFPRVMTVPGNVAELDDDQAYSVTSENPSSISSDRMIIVANQLPLRAKRREDDNSWSFSWNEDSLLLQLKDGLPEDMEVLYVGSLKVDIQSDEQDEVSQILLEKFKCIPTFLPPHILEKFYDGFCKRHLWPLFHYMLPYSADQKGRFDRSMWEAYVSANKLFFQKVVEVINPDDDYIWIHDYHLMVLPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTIGIKIMPVGIHMSRIESVMKLADEDAKTRELTQQFAGKTVLLGVDDLDIFKGINLKLLAMEQVLKQHPKWQGKAVLIQIVNPARGKGRDLQEIEDEIKESCARINKEYGHPGYEPIVLLDRHVPITERVAYYSIAECVVVTAVRDGMNLTPYEYVVCRQGISTSQECLNFSGPKKSMLVISEFIGCSPSLSGAFRINPWNVERTAEALNEAISMADTEKQLRHEKHYRYVATHDVAYWSRSFLQDMERTCSDHFRRRCWGIGFSFGFRVVALDPNFRKLSVDAIVSTYSRAESRAILLDYDGTVMPQNSINKSPSAQVISILNTLCADAKNVVFIVSGRGRDSLSKWFRPCKKLGIAAEHGYFLRQSQNEEWKICGQSSDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADPGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGVTKGLVAEKIFSSMAEDGKLADFVLCIGDDRSDEDMFEIIGNALSSNILSPTASVFACTVGQKPSKAKYYLDDTAEVISMLEYLAEASSPLPSSDDEKGEAEG 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8257974 8265426 - Maker00007803 Lcy4g0684 630210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0684 856 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 719 850 - -
Lcy4g0684 856 CDD HAD_TPP 591 830 - -
Lcy4g0684 856 CDD GT20_TPS 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lcy4g0684 856 FunFam Alpha,alpha-trehalose-phosphate synthase 314 527 - -
Lcy4g0684 856 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 546 - -
Lcy4g0684 856 Gene3D Glycogen Phosphorylase B; 53 313 - -
Lcy4g0684 856 SUPERFAMILY HAD-like 590 838 IPR036412 -
Lcy4g0684 856 Gene3D - 718 850 IPR023214 -
Lcy4g0684 856 Gene3D - 589 690 IPR023214 -
Lcy4g0684 856 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 22 840 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Lcy4g0684 856 Gene3D Glycogen Phosphorylase B; 314 527 - -
Lcy4g0684 856 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 312 - -
Lcy4g0684 856 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 589 706 - -
Lcy4g0684 856 NCBIfam HAD-IIB family hydrolase 592 796 IPR006379 -
Lcy4g0684 856 NCBIfam trehalose-phosphatase 588 838 IPR003337 GO:0005992(InterPro)
Lcy4g0684 856 FunFam Trehalose-6-phosphate synthase 2 673 752 - -
Lcy4g0684 856 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lcy4g0684 856 Pfam Trehalose-phosphatase 593 827 IPR003337 GO:0005992(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0684 Lcy-Chr4:8257974 Lcy6g2240 Lcy-Chr6:46976806 0 dispersed
Lcy1g0253 Lcy-Chr1:2266078 Lcy4g0684 Lcy-Chr4:8257974 0 wgd
Lcy4g0684 Lcy-Chr4:8257974 Lcy5g1792 Lcy-Chr5:40640939 1.66E-129 wgd
Lcy4g0684 Lcy-Chr4:8257974 Lcy8g1559 Lcy-Chr8:42226385 1.28E-284 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0684 K16055 - csv:101209914 1694.09