Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0686 ATGGACCGCCGTGTTCGTACAAACCCATTTCTCTCCGAGCAAGAAGATCCTGAAGCCACGTCGGACGACGGCCTGCCGGAGTCCCCCTCCGACGGCAATGACTCTAAACCCGCCGCCGGCCCGCCGCCCAAAAAGAGTAGACGGGGAGTGCAGAAAAGAGTGGTGTCAGTACCGATCGGCGACGTGGAGGGATCTAAGAGCAAAGGGGAAGCATATCCACCGTCCGATTCGTGGGCATGGAGAAAATACGGCCAAAAGCCAATCAAGGGCTCTCCTTATCCCAGGGGATATTACCGATGTAGTAGCTCCAAGGGCTGCCCAGCAAGAAAGCAAGTAGAGAGAAGCCGTGTGGACCCCACCAAGCTCGTTATTACCTACGCTTTCGACCACAACCACCAACTCCCGGCCACCAAATCTCACCACCACCACCACCACAATTCCTCGCCGTCCTCCGCCTCGATCGCCGCCGCAGTCGCCGTCCCCGACGACTCGTCACCGGGGAGCACTACGACGTCGTCCTCCACTTCCTCCGGCGACAACACGAACGCCACCCCGACGTCGCCGACGGCGGCGAAGTTCGAGGAGGCAGCGGCGGTTTTCGCGAGTCAGCCGGAGCTGGAACTCGGCGGCGATTCGCTGATGATAAAACCGTGCATCGGGGATTTTGGATGGTTTGCTGACGTGGCGTACGATAGAATCCTGGAGGGCCCGATTTGCGGGGGAGGCGACATATTCGACGACGCCGATGTAATGGTTTTGTCGACAAGAGGAGATGACGAGGAGGAGTCGTTGTTTGCGGATCTTGGGGAATTACCCGAAGGCTCGGTGGTTTTCGGCCGGCGGCGAGCGGTCGAACCGGACGGACCGAACCGGACGTGTGGCAGAGTTTTAGACTGCTAG 900 59.56 MDRRVRTNPFLSEQEDPEATSDDGLPESPSDGNDSKPAAGPPPKKSRRGVQKRVVSVPIGDVEGSKSKGEAYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLVITYAFDHNHQLPATKSHHHHHHNSSPSSASIAAAVAVPDDSSPGSTTTSSSTSSGDNTNATPTSPTAAKFEEAAAVFASQPELELGGDSLMIKPCIGDFGWFADVAYDRILEGPICGGGDIFDDADVMVLSTRGDDEEESLFADLGELPEGSVVFGRRRAVEPDGPNRTCGRVLDC 299
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 8272962 8275986 - Maker00007786 Lcy4g0686 630212
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0686 299 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 28 199 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
Lcy4g0686 299 FunFam WRKY transcription factor 65 61 135 - -
Lcy4g0686 299 Pfam WRKY DNA -binding domain 76 133 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0686 299 MobiDBLite consensus disorder prediction 163 187 - -
Lcy4g0686 299 SMART WRKY_cls 74 134 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0686 299 SUPERFAMILY WRKY DNA-binding domain 70 135 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0686 299 Gene3D WRKY domain 62 136 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0686 299 MobiDBLite consensus disorder prediction 1 114 - -
Lcy4g0686 299 MobiDBLite consensus disorder prediction 160 187 - -
Lcy4g0686 299 ProSiteProfiles WRKY domain profile. 75 135 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0686 Lcy-Chr4:8272962 Lcy5g1593 Lcy-Chr5:37537883 1.00E-33 dispersed
Lcy4g0686 Lcy-Chr4:8272962 Lcy5g1807 Lcy-Chr5:40852560 9.85E-54 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19963 None None None None Lcy TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0686 - - - 0.0