Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy4g0686 | ATGGACCGCCGTGTTCGTACAAACCCATTTCTCTCCGAGCAAGAAGATCCTGAAGCCACGTCGGACGACGGCCTGCCGGAGTCCCCCTCCGACGGCAATGACTCTAAACCCGCCGCCGGCCCGCCGCCCAAAAAGAGTAGACGGGGAGTGCAGAAAAGAGTGGTGTCAGTACCGATCGGCGACGTGGAGGGATCTAAGAGCAAAGGGGAAGCATATCCACCGTCCGATTCGTGGGCATGGAGAAAATACGGCCAAAAGCCAATCAAGGGCTCTCCTTATCCCAGGGGATATTACCGATGTAGTAGCTCCAAGGGCTGCCCAGCAAGAAAGCAAGTAGAGAGAAGCCGTGTGGACCCCACCAAGCTCGTTATTACCTACGCTTTCGACCACAACCACCAACTCCCGGCCACCAAATCTCACCACCACCACCACCACAATTCCTCGCCGTCCTCCGCCTCGATCGCCGCCGCAGTCGCCGTCCCCGACGACTCGTCACCGGGGAGCACTACGACGTCGTCCTCCACTTCCTCCGGCGACAACACGAACGCCACCCCGACGTCGCCGACGGCGGCGAAGTTCGAGGAGGCAGCGGCGGTTTTCGCGAGTCAGCCGGAGCTGGAACTCGGCGGCGATTCGCTGATGATAAAACCGTGCATCGGGGATTTTGGATGGTTTGCTGACGTGGCGTACGATAGAATCCTGGAGGGCCCGATTTGCGGGGGAGGCGACATATTCGACGACGCCGATGTAATGGTTTTGTCGACAAGAGGAGATGACGAGGAGGAGTCGTTGTTTGCGGATCTTGGGGAATTACCCGAAGGCTCGGTGGTTTTCGGCCGGCGGCGAGCGGTCGAACCGGACGGACCGAACCGGACGTGTGGCAGAGTTTTAGACTGCTAG | 900 | 59.56 | MDRRVRTNPFLSEQEDPEATSDDGLPESPSDGNDSKPAAGPPPKKSRRGVQKRVVSVPIGDVEGSKSKGEAYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLVITYAFDHNHQLPATKSHHHHHHNSSPSSASIAAAVAVPDDSSPGSTTTSSSTSSGDNTNATPTSPTAAKFEEAAAVFASQPELELGGDSLMIKPCIGDFGWFADVAYDRILEGPICGGGDIFDDADVMVLSTRGDDEEESLFADLGELPEGSVVFGRRRAVEPDGPNRTCGRVLDC | 299 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 8272962 | 8275986 | - | Maker00007786 | Lcy4g0686 | 630212 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy4g0686 | 299 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 28 | 199 | IPR044810 | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER) | |
| Lcy4g0686 | 299 | FunFam | WRKY transcription factor 65 | 61 | 135 | - | - | |
| Lcy4g0686 | 299 | Pfam | WRKY DNA -binding domain | 76 | 133 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy4g0686 | 299 | MobiDBLite | consensus disorder prediction | 163 | 187 | - | - | |
| Lcy4g0686 | 299 | SMART | WRKY_cls | 74 | 134 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy4g0686 | 299 | SUPERFAMILY | WRKY DNA-binding domain | 70 | 135 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy4g0686 | 299 | Gene3D | WRKY domain | 62 | 136 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy4g0686 | 299 | MobiDBLite | consensus disorder prediction | 1 | 114 | - | - | |
| Lcy4g0686 | 299 | MobiDBLite | consensus disorder prediction | 160 | 187 | - | - | |
| Lcy4g0686 | 299 | ProSiteProfiles | WRKY domain profile. | 75 | 135 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy4g0686 | Lcy-Chr4:8272962 | Lcy5g1593 | Lcy-Chr5:37537883 | 1.00E-33 | dispersed | |
| Lcy4g0686 | Lcy-Chr4:8272962 | Lcy5g1807 | Lcy-Chr5:40852560 | 9.85E-54 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 19963 | None | None | None | None | Lcy | TF |
Pathway information