Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0720 ATGAAGTCCGGCGCCGGCGGCGAGATTGTTCCGGTCCAAGGCGGCCATATCCTCCGCTCCACCGGCCGGAAAGACCGTCACAGCAAGGTTTTCACGGCGAAAGGCCCTCGGGACCGCCGTGTGAGATTATCGGCTCACACCGCCATCCGGTTCTACGATGTGCAGGACCGGTTGGGCTACGATCGGCCGAGTAAAGCCGTCGATTGGCTAATCAAGAAGGCGAAATTCGCCATTGATAAGCTTCAAGAACTTCCCCCTTATTTCCCCATCGCCAATGGCTTCACTGACCCGAATCGGAAAACAGGGGAAACGGAAACAGAGGCGTCCGAGTTCGATTCCCAGTTGCAGTTGCAATCCGCAGCCGGAAACTTCGCTCCGCCGCTGGAATCGTTCTTTCCGACGAGCTCTGCTACTACTTCCATCAACTTTCAGGGATATCCGGTGGATTTGATTCTGAGACCCTCTGACCCGGCTCGAGATCTTGCCTTATCTCTCCATAACTTTCATGATTCTCGTCTAATTCCGTCGGAGCAAGATGCGAGCCCTTCGCCGGAAAATCCCCAACGGATCATCGCCGATTCGATTCCGTCTGGGTACGAAGGATGCGACGCCGGGCTATGGCTGCAGCAGCCATTGTTGGGGCAAAATTCGGCGGTGGCGTTTTCCCAGAGAGAAGCACTTCAAGTGCCGACTCGTGGTTGGAGTAATCAGAATCGACAGTCGGCGGTGCTCGGGGGCCGATTTGATGGGTCGTCGGAGTTCCGTACACCGGCACGGATTCCAGGTGAAGGTGGGGAAGACGGCGTCGTTTCGGGGAGTCACTCGTCGTCTCCGAATTATCGTCGGTAG 849 56.54 MKSGAGGEIVPVQGGHILRSTGRKDRHSKVFTAKGPRDRRVRLSAHTAIRFYDVQDRLGYDRPSKAVDWLIKKAKFAIDKLQELPPYFPIANGFTDPNRKTGETETEASEFDSQLQLQSAAGNFAPPLESFFPTSSATTSINFQGYPVDLILRPSDPARDLALSLHNFHDSRLIPSEQDASPSPENPQRIIADSIPSGYEGCDAGLWLQQPLLGQNSAVAFSQREALQVPTRGWSNQNRQSAVLGGRFDGSSEFRTPARIPGEGGEDGVVSGSHSSSPNYRR 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8713543 8714391 + Maker00007777 Lcy4g0720 630246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0720 282 MobiDBLite consensus disorder prediction 174 190 - -
Lcy4g0720 282 ProSiteProfiles TCP domain profile. 23 81 IPR017887 -
Lcy4g0720 282 MobiDBLite consensus disorder prediction 174 195 - -
Lcy4g0720 282 MobiDBLite consensus disorder prediction 1 27 - -
Lcy4g0720 282 Pfam TCP family transcription factor 22 112 IPR017887 -
Lcy4g0720 282 MobiDBLite consensus disorder prediction 231 245 - -
Lcy4g0720 282 MobiDBLite consensus disorder prediction 231 282 - -
Lcy4g0720 282 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 7 228 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0720 Lcy-Chr4:8713543 Lcy6g0628 Lcy-Chr6:5980419 4.85E-42 dispersed
Lcy4g0720 Lcy-Chr4:8713543 Lcy5g1844 Lcy-Chr5:41279962 2.63E-20 wgd
Lcy4g0720 Lcy-Chr4:8713543 Lcy5g2438 Lcy-Chr5:47146351 4.55E-12 wgd
Lcy4g0720 Lcy-Chr4:8713543 Lcy8g1586 Lcy-Chr8:42461686 6.69E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19966 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0720 - - - 0.0