Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0720 ATGAAGTCCGGCGCCGGCGGCGAGATTGTTCCGGTCCAAGGCGGCCATATCCTCCGCTCCACCGGCCGGAAAGACCGTCACAGCAAGGTTTTCACGGCGAAAGGCCCTCGGGACCGCCGTGTGAGATTATCGGCTCACACCGCCATCCGGTTCTACGATGTGCAGGACCGGTTGGGCTACGATCGGCCGAGTAAAGCCGTCGATTGGCTAATCAAGAAGGCGAAATTCGCCATTGATAAGCTTCAAGAACTTCCCCCTTATTTCCCCATCGCCAATGGCTTCACTGACCCGAATCGGAAAACAGGGGAAACGGAAACAGAGGCGTCCGAGTTCGATTCCCAGTTGCAGTTGCAATCCGCAGCCGGAAACTTCGCTCCGCCGCTGGAATCGTTCTTTCCGACGAGCTCTGCTACTACTTCCATCAACTTTCAGGGATATCCGGTGGATTTGATTCTGAGACCCTCTGACCCGGCTCGAGATCTTGCCTTATCTCTCCATAACTTTCATGATTCTCGTCTAATTCCGTCGGAGCAAGATGCGAGCCCTTCGCCGGAAAATCCCCAACGGATCATCGCCGATTCGATTCCGTCTGGGTACGAAGGATGCGACGCCGGGCTATGGCTGCAGCAGCCATTGTTGGGGCAAAATTCGGCGGTGGCGTTTTCCCAGAGAGAAGCACTTCAAGTGCCGACTCGTGGTTGGAGTAATCAGAATCGACAGTCGGCGGTGCTCGGGGGCCGATTTGATGGGTCGTCGGAGTTCCGTACACCGGCACGGATTCCAGGTGAAGGTGGGGAAGACGGCGTCGTTTCGGGGAGTCACTCGTCGTCTCCGAATTATCGTCGGTAG 849 56.54 MKSGAGGEIVPVQGGHILRSTGRKDRHSKVFTAKGPRDRRVRLSAHTAIRFYDVQDRLGYDRPSKAVDWLIKKAKFAIDKLQELPPYFPIANGFTDPNRKTGETETEASEFDSQLQLQSAAGNFAPPLESFFPTSSATTSINFQGYPVDLILRPSDPARDLALSLHNFHDSRLIPSEQDASPSPENPQRIIADSIPSGYEGCDAGLWLQQPLLGQNSAVAFSQREALQVPTRGWSNQNRQSAVLGGRFDGSSEFRTPARIPGEGGEDGVVSGSHSSSPNYRR 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8713543 8714391 + Maker00007777 Lcy4g0720 630246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0720 282 MobiDBLite consensus disorder prediction 174 190 - -
Lcy4g0720 282 ProSiteProfiles TCP domain profile. 23 81 IPR017887 -
Lcy4g0720 282 MobiDBLite consensus disorder prediction 174 195 - -
Lcy4g0720 282 MobiDBLite consensus disorder prediction 1 27 - -
Lcy4g0720 282 Pfam TCP family transcription factor 22 112 IPR017887 -
Lcy4g0720 282 MobiDBLite consensus disorder prediction 231 245 - -
Lcy4g0720 282 MobiDBLite consensus disorder prediction 231 282 - -
Lcy4g0720 282 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 7 228 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0720 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0720 Lcy-Chr4:8713543 Lcy6g0628 Lcy-Chr6:5980419 4.85E-42 dispersed
Lcy4g0720 Lcy-Chr4:8713543 Lcy5g1844 Lcy-Chr5:41279962 2.63E-20 wgd
Lcy4g0720 Lcy-Chr4:8713543 Lcy5g2438 Lcy-Chr5:47146351 4.55E-12 wgd
Lcy4g0720 Lcy-Chr4:8713543 Lcy8g1586 Lcy-Chr8:42461686 6.69E-44 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g1073 . 43 264 TCP Transcription Factor Family AT5G23280 62.9 2.3e-64 243.0
Lcy7g0833 . 36 261 TCP Transcription Factor Family AT5G23280 59.1 2.2e-59 226.5
Lcy13g0617 . 3 344 TCP Transcription Factor Family AT2G45680 51.2 6.0e-71 265.4
Lcy5g2557 . 59 158 TCP Transcription Factor Family AT3G47620 75.7 7.8e-37 152.5
Lcy10g0080 . 115 380 TCP Transcription Factor Family AT3G27010 59.2 1.9e-60 230.3
Lcy3g1497 . 1 180 TCP Transcription Factor Family AT3G27010 51.0 4.6e-38 156.0
Lcy10g1073 . 1 262 TCP Transcription Factor Family AT5G08330 57.7 1.4e-66 250.4
Lcy7g0833 . 8 258 TCP Transcription Factor Family AT5G08330 54.8 2.5e-60 229.6
Lcy3g0222 . 30 141 TCP Transcription Factor Family AT3G02150 68.1 3.3e-37 153.3
Lcy4g0720 . 6 168 TCP Transcription Factor Family AT2G31070 53.6 6.2e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010967 3 0 2 3 2 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 0 0 1 1 1 1 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19966 None None None None Lcy TF