Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy4g0720 | ATGAAGTCCGGCGCCGGCGGCGAGATTGTTCCGGTCCAAGGCGGCCATATCCTCCGCTCCACCGGCCGGAAAGACCGTCACAGCAAGGTTTTCACGGCGAAAGGCCCTCGGGACCGCCGTGTGAGATTATCGGCTCACACCGCCATCCGGTTCTACGATGTGCAGGACCGGTTGGGCTACGATCGGCCGAGTAAAGCCGTCGATTGGCTAATCAAGAAGGCGAAATTCGCCATTGATAAGCTTCAAGAACTTCCCCCTTATTTCCCCATCGCCAATGGCTTCACTGACCCGAATCGGAAAACAGGGGAAACGGAAACAGAGGCGTCCGAGTTCGATTCCCAGTTGCAGTTGCAATCCGCAGCCGGAAACTTCGCTCCGCCGCTGGAATCGTTCTTTCCGACGAGCTCTGCTACTACTTCCATCAACTTTCAGGGATATCCGGTGGATTTGATTCTGAGACCCTCTGACCCGGCTCGAGATCTTGCCTTATCTCTCCATAACTTTCATGATTCTCGTCTAATTCCGTCGGAGCAAGATGCGAGCCCTTCGCCGGAAAATCCCCAACGGATCATCGCCGATTCGATTCCGTCTGGGTACGAAGGATGCGACGCCGGGCTATGGCTGCAGCAGCCATTGTTGGGGCAAAATTCGGCGGTGGCGTTTTCCCAGAGAGAAGCACTTCAAGTGCCGACTCGTGGTTGGAGTAATCAGAATCGACAGTCGGCGGTGCTCGGGGGCCGATTTGATGGGTCGTCGGAGTTCCGTACACCGGCACGGATTCCAGGTGAAGGTGGGGAAGACGGCGTCGTTTCGGGGAGTCACTCGTCGTCTCCGAATTATCGTCGGTAG | 849 | 56.54 | MKSGAGGEIVPVQGGHILRSTGRKDRHSKVFTAKGPRDRRVRLSAHTAIRFYDVQDRLGYDRPSKAVDWLIKKAKFAIDKLQELPPYFPIANGFTDPNRKTGETETEASEFDSQLQLQSAAGNFAPPLESFFPTSSATTSINFQGYPVDLILRPSDPARDLALSLHNFHDSRLIPSEQDASPSPENPQRIIADSIPSGYEGCDAGLWLQQPLLGQNSAVAFSQREALQVPTRGWSNQNRQSAVLGGRFDGSSEFRTPARIPGEGGEDGVVSGSHSSSPNYRR | 282 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 8713543 | 8714391 | + | Maker00007777 | Lcy4g0720 | 630246 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy4g0720 | 282 | MobiDBLite | consensus disorder prediction | 174 | 190 | - | - | |
Lcy4g0720 | 282 | ProSiteProfiles | TCP domain profile. | 23 | 81 | IPR017887 | - | |
Lcy4g0720 | 282 | MobiDBLite | consensus disorder prediction | 174 | 195 | - | - | |
Lcy4g0720 | 282 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Lcy4g0720 | 282 | Pfam | TCP family transcription factor | 22 | 112 | IPR017887 | - | |
Lcy4g0720 | 282 | MobiDBLite | consensus disorder prediction | 231 | 245 | - | - | |
Lcy4g0720 | 282 | MobiDBLite | consensus disorder prediction | 231 | 282 | - | - | |
Lcy4g0720 | 282 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 7 | 228 | IPR005333 | GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy4g0720 | Lcy-Chr4:8713543 | Lcy6g0628 | Lcy-Chr6:5980419 | 4.85E-42 | dispersed | |
Lcy4g0720 | Lcy-Chr4:8713543 | Lcy5g1844 | Lcy-Chr5:41279962 | 2.63E-20 | wgd | |
Lcy4g0720 | Lcy-Chr4:8713543 | Lcy5g2438 | Lcy-Chr5:47146351 | 4.55E-12 | wgd | |
Lcy4g0720 | Lcy-Chr4:8713543 | Lcy8g1586 | Lcy-Chr8:42461686 | 6.69E-44 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19966 | None | None | None | None | Lcy | TF |
Pathway information
