Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0731 ATGATGCTCGATCACCACTCCCAACACTCCGACCAAACTCGCAGTTCCGTCGAAGCCGATGATGATTCCGACCCTCTCCTTCCTACTCTCTCTACGCCTGTTGTCGTCAATGGAGCCGACTGCGAGAATGCCGGAGATGACCTCTTCGTCCCTCCCCTGAACTTCGCCGTCGTTGACAATGGCATTTTCCGCTCCGGCTTCCCCGACTCTTCCAACTTCTCCTTCTTGCAGACCTTAGGCCTTCGTTCGATTATATGTCTTTGTCCCGAGCCATATCCTGAGGCGAGCGTGGATTTCCTCAAGTCGAATGGGATCCGATTGTTTCAATTCGGGATTGAAGGTACTAAGGCCGGTTCAGACAAGGTTGATGCATATGTAAACTTGATTTTCGAGTGTATGAGGAATTTGGATATGAGCGCTGATCAAATGTATTATTTGGAGCCTTTTGTGAACATTCCAGACGATACAATTCGTGAAGCACTTAAAGTTATCCTTGATGTGAGGAACCGCCCGGTTTTAATCCATTGCAAACGAGGAAAGCACCGAACTGGTTGTGTTGTGGGATGCTTTAGAAAGTTGCAGAAATGGTGCCTATCCTCAGTCTTTGATGAGTACCAGCGGTTTGCCGCTGCCAAGGCAAGAGTTTCAGATCAGAGGTTCATCGAACTATTCGACATTTCTGGCTTGAAGCATCTGCCATCTTCATTTTCATGTTCCAAAAGGTAA 726 47.66 MMLDHHSQHSDQTRSSVEADDDSDPLLPTLSTPVVVNGADCENAGDDLFVPPLNFAVVDNGIFRSGFPDSSNFSFLQTLGLRSIICLCPEPYPEASVDFLKSNGIRLFQFGIEGTKAGSDKVDAYVNLIFECMRNLDMSADQMYYLEPFVNIPDDTIREALKVILDVRNRPVLIHCKRGKHRTGCVVGCFRKLQKWCLSSVFDEYQRFAAAKARVSDQRFIELFDISGLKHLPSSFSCSKR 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8831749 8834719 - Maker00007780 Lcy4g0731 630257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0731 241 ProSitePatterns Tyrosine specific protein phosphatases active site. 174 184 IPR016130 GO:0016311(InterPro)
Lcy4g0731 241 MobiDBLite consensus disorder prediction 1 21 - -
Lcy4g0731 241 Gene3D Protein tyrosine phosphatase superfamily 48 228 IPR029021 -
Lcy4g0731 241 PRINTS Plant and fungal dual specificity phosphatase signature 105 119 IPR020428 GO:0016791(InterPro)
Lcy4g0731 241 PRINTS Plant and fungal dual specificity phosphatase signature 49 66 IPR020428 GO:0016791(InterPro)
Lcy4g0731 241 PRINTS Plant and fungal dual specificity phosphatase signature 86 99 IPR020428 GO:0016791(InterPro)
Lcy4g0731 241 PRINTS Plant and fungal dual specificity phosphatase signature 152 166 IPR020428 GO:0016791(InterPro)
Lcy4g0731 241 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 226 IPR029021 -
Lcy4g0731 241 PANTHER TYROSINE-PROTEIN PHOSPHATASE 22 235 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Lcy4g0731 241 Pfam Tyrosine phosphatase family 50 231 IPR004861 -
Lcy4g0731 241 CDD PFA-DSP_Siw14 48 225 - -
Lcy4g0731 241 ProSiteProfiles Dual specificity protein phosphatase domain profile. 54 238 IPR020422 GO:0006470(InterPro)
Lcy4g0731 241 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1461 Lcy-Chr2:18223133 Lcy4g0731 Lcy-Chr4:8831749 1.62E-60 transposed
Lcy4g0731 Lcy-Chr4:8831749 Lcy8g1593 Lcy-Chr8:42521546 3.72E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0731 K18045 - csv:101209768 333.954