Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0748 ATGGCTCCGACGATTTATTCTAGCTCCTCTCTCTCTTCAGTCAGTTCCTTGGACTACTTTATTTCGGTGTATTTGCAAATTTGCAACCTAATTTGGTTTCACCACTTCCTCAGAGCACTGAAGTCCCAGAATCTATCTGGCATTGTGCCCCCAGAGTTTTCCAAGCTTCGCTTCCTCAAACAGCTAGACCTCAGTCGTAACTGTCTCACTGGTTCTATTCCTCCTCAATGGGCTACCATGCGATTGGTAGAACTCTCTTTCATGGGAAACAAATTGTCCGGCCCATTCCCGAAAGTTCTTACTAATATCACCACCCTCAGAAACCTGAGCATTGAAGGAAATCAATTTTCCGGTCGAATTCCACCTGAGGTCGGAAAACTAGTCAATTTGGAAAAATTTGTTTTGGAATCAAATGGCTTCACCGGAGAATTGCCTAAAGCACTAGCGAAGCTGTCGAACTTAATTGATATGAGAATATCTGACTTAAAAGGTGGGAGGTCTCCTTTTCCACCGTTGAGCAAATTGGAATCCTTGAAGACGCTGATACTGAGGAAGTGCTTAATTGTTGGAGAAATCCCCAAATACATTGGGGACATGAAAAAATTGAAAAACTTAGACCTCAGCTACAATGACTTGACTGGAGAAGTTCCTGCATCATTCGAACGACTGGAAAAGATAGATTACATGTTCTCCTGCCTCATATTTGCTCACATTAATACGCCTCCTAAAGCATTCTCCTCAAGGAAGAACCTCCACCACCACTTTCAGAGGAGTAACATTTCTATTTCTCATATTTTCCACTTCAACACTGACCAAAGAGAGTGGGAAAAGGTTGCACAGTTCCTATATTTGACAGGAAACAAGCTCGATGGAATTATTCCTGGTTGGGTTTTAGGAAGCAACAAGAATGTGTACGTCCTTTCGTCTGGAATAATTTTTCGGATCTTTCTAACAACAACTTCACCTGGGAAAGCTCGAGCCCAGCTGAGTGTCCTCGAGGGAGTGTGTGAGTATTATGAAGTTATTGTTTACTTTCTATATTCAGAGCTCATCCTGGACTATAACAAAAAGAAAAAACTCTCATTTTTACAGAAATTTAGTAGAGACTTACTCACCGTCTGCAGAAAAATTGTAAGGATTCTGTGCCAAACTAGAATCCATCCCTGCCTAAAAAGGAACTTCCCGTGTTCTGCACCAAAGGAACAGCATCACTACTCTTTGCACATTAACTGTGGCGGTAAAGAAGCATTTGTAAGGGGTGAAAGGTATGAAGCGGATAGAGAAGGGGCTTCAATGTTTTATACTGGTCAGAATTGGGCTTTTAGCAGCACGGGAAGCTTTATGGACAATGATGTTGATGCTGATAACTACATTATAACAAATACATCTGCTCTTTCAAATGTCTCTGTCACTGATTCAGAACTGTACACAAAAGCGAGAAATTCTCCTCAATCTCTTACATACTATGGGCTCTGTCTCATAAACGGGAATTATACCGTTAAACTCCACTTTGCAGAGATTGTATTTATAAATGACAGTTCATTCAATAGCCTTGGGAAGCGAATTTTTGATGTGTACGTACAGGAAAAGTTGGTCCTGAAAGATTTTGATATAGAAAATGAAGCAGGGGGTACAGGCAAGCCTGTTATAAAAACAGTTACTGCAGAAGTCACAAGTCATACATTGAAGATCCATTTCTACTGGGCTGGAAGAGGAACAACAGGAATCCCTGTTAGAGGAAATTATGGTCCTCTGATATCAGCTATTTCCGTAGATCCGAATTTTACACCTCCTGAGTACCATGTGAAGAAGAATCACACCATCATAATTATTGGGACAACAGCAGCAGCTCTTGTTCTCCTTCTTCTGGTGTTATGTATTATGTGGAGGAAGGGATGGCTGGGAGGCAAGGCATCTGTATATAAAGAGCTTAGAGGTATAGACCTGCAAACAGGATTATTTACAATAAGACAGATCAAAGCAGCCACTAAAAATTTTGATTCTGCGAACAAAGTGGGGGAAGGTGGTTTTGGTGCAGTTTACAAGGGTCTCTTGTCAGATGGTACTATAATTGCAGTCAAGCAGCTGTCGTCAAAATCAAAGCAAGGAAATCGAGAATTTGTTAATGAAATAGGCATGATATCTGCATTGCAACACCCAAATCTTGTCAAGCTTTATGGATGTTGTGTTGATGGGAACCAACTAATGTTGATTTATGAATACATGGAAAATAATTGCTTATCACGTGCTCTTTTTAGAAAAGACCCAGCATCTAAATTGAGATTGGATTGGCCCACCAGGCAGAAAATTTGTCTGGGAATAGCTAGAGGTTTGGCCTATCTGCATGAGGAGTCAAGATTAAAAATCGTACATAGGGATATCAAGACAAGTAATGTGTTGCTTGATAAGGATTTCAATGCTAAAATTTCTGATTTTGGTTTGGCTAAACTTTATGAAGATGACAATACCCATATCAGCACCCGAGTTGCTGGAACCATTGGTTATATGGCACCAGAATATGCAATGCGTGGATGCTTGACCAGCAAAGCTGATGTTTATAGCTTTGGAGTAGTTGCCCTGGAAATTGTCAGCGGCAAAAGCAATACCAACTACAGGCCTAAGGAGGATTTTGTTTACCTTCTTGATTGGGCATCTGTTCTTCAAGAAAAAGGAAGCTTATTGGAGTTGGTGGACCCAGCTTTGGGCTCAGATTATTCATCAGAAGAAGCAATGGTGATGCTAAATGTGGCTCTCCTCTGCACCAACGCATCCCCAACTCTGCGGCCTCTAATGTCCCAAGTGGTCAGCATGCTCGAAGGTCGAACTCCAGTGCAAGCACTTCTTTCTGATCCAGGATTTTCAGCCATTAATTCCAAACTGAAAGCTCTCAGAAATCACTTCTGGCAACAATTGAGCCCCACACGCAGTTTGTCATTGGACGATTTCCCAAGTGATTCCTTGAGTTCAAATGTTGAGGCAGAAGAGACTTACAATCTTGTAAGAGCCAATTCTGTTAAATCTGATACGTGA 3030 41.25 MAPTIYSSSSLSSVSSLDYFISVYLQICNLIWFHHFLRALKSQNLSGIVPPEFSKLRFLKQLDLSRNCLTGSIPPQWATMRLVELSFMGNKLSGPFPKVLTNITTLRNLSIEGNQFSGRIPPEVGKLVNLEKFVLESNGFTGELPKALAKLSNLIDMRISDLKGGRSPFPPLSKLESLKTLILRKCLIVGEIPKYIGDMKKLKNLDLSYNDLTGEVPASFERLEKIDYMFSCLIFAHINTPPKAFSSRKNLHHHFQRSNISISHIFHFNTDQREWEKVAQFLYLTGNKLDGIIPGWVLGSNKNVYVLSSGIIFRIFLTTTSPGKARAQLSVLEGVCEYYEVIVYFLYSELILDYNKKKKLSFLQKFSRDLLTVCRKIVRILCQTRIHPCLKRNFPCSAPKEQHHYSLHINCGGKEAFVRGERYEADREGASMFYTGQNWAFSSTGSFMDNDVDADNYIITNTSALSNVSVTDSELYTKARNSPQSLTYYGLCLINGNYTVKLHFAEIVFINDSSFNSLGKRIFDVYVQEKLVLKDFDIENEAGGTGKPVIKTVTAEVTSHTLKIHFYWAGRGTTGIPVRGNYGPLISAISVDPNFTPPEYHVKKNHTIIIIGTTAAALVLLLLVLCIMWRKGWLGGKASVYKELRGIDLQTGLFTIRQIKAATKNFDSANKVGEGGFGAVYKGLLSDGTIIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCVDGNQLMLIYEYMENNCLSRALFRKDPASKLRLDWPTRQKICLGIARGLAYLHEESRLKIVHRDIKTSNVLLDKDFNAKISDFGLAKLYEDDNTHISTRVAGTIGYMAPEYAMRGCLTSKADVYSFGVVALEIVSGKSNTNYRPKEDFVYLLDWASVLQEKGSLLELVDPALGSDYSSEEAMVMLNVALLCTNASPTLRPLMSQVVSMLEGRTPVQALLSDPGFSAINSKLKALRNHFWQQLSPTRSLSLDDFPSDSLSSNVEAEETYNLVRANSVKSDT 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8992338 9002340 + Maker00007825 Lcy4g0748 630274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0748 1009 Gene3D - 402 593 - -
Lcy4g0748 1009 CDD STKc_IRAK 672 940 - -
Lcy4g0748 1009 ProSitePatterns Protein kinases ATP-binding region signature. 672 694 IPR017441 GO:0005524(InterPro)
Lcy4g0748 1009 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 635 741 - -
Lcy4g0748 1009 Gene3D Phosphorylase Kinase; domain 1 637 741 - -
Lcy4g0748 1009 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 31 953 IPR051824 -
Lcy4g0748 1009 ProSiteProfiles Protein kinase domain profile. 666 948 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0748 1009 Gene3D Transferase(Phosphotransferase) domain 1 742 947 - -
Lcy4g0748 1009 Pfam Malectin domain 406 589 IPR021720 -
Lcy4g0748 1009 Pfam Leucine Rich Repeat 106 127 IPR001611 GO:0005515(InterPro)
Lcy4g0748 1009 Pfam Leucine Rich Repeat 201 223 IPR001611 GO:0005515(InterPro)
Lcy4g0748 1009 Pfam Leucine Rich Repeat 59 78 IPR001611 GO:0005515(InterPro)
Lcy4g0748 1009 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 77 164 - -
Lcy4g0748 1009 Pfam Protein tyrosine and serine/threonine kinase 669 883 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g0748 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g0748 1009 SMART serkin_6 666 936 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0748 1009 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 594 - -
Lcy4g0748 1009 SUPERFAMILY L domain-like 42 226 - -
Lcy4g0748 1009 Gene3D Ribonuclease Inhibitor 7 310 IPR032675 -
Lcy4g0748 1009 FunFam Putative LRR receptor-like serine/threonine-protein kinase 742 950 - -
Lcy4g0748 1009 SUPERFAMILY Protein kinase-like (PK-like) 651 939 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0748 Lcy-Chr4:8992338 Lcy9g1375 Lcy-Chr9:38622455 2.77E-244 dispersed
Lcy6g2049 Lcy-Chr6:43528885 Lcy4g0748 Lcy-Chr4:8992338 1.57E-40 dispersed
Lcy9g0626 Lcy-Chr9:20737737 Lcy4g0748 Lcy-Chr4:8992338 2.38E-72 dispersed
Lcy9g1383 Lcy-Chr9:38764957 Lcy4g0748 Lcy-Chr4:8992338 8.94E-12 dispersed
Lcy5g1900 Lcy-Chr5:41812680 Lcy4g0748 Lcy-Chr4:8992338 3.98E-28 transposed
Lcy4g0748 Lcy-Chr4:8992338 Lcy5g2419 Lcy-Chr5:46964286 4.37E-68 wgd
Lcy4g0748 Lcy-Chr4:8992338 Lcy7g1184 Lcy-Chr7:13874394 1.32E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65856 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0748 - - - 0.0