Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0758 ATGGCTCAAGAATTTAGCTGCTTTTTGCTTTCATTATCGCTCTCCTTTCTAGCTGCAATCTTAATAATGTCCATTTTTCTCTTTAGAAGCAAAAATCTTCCTCCTGGGCAAATGGGTTTCCCTTGGATTGGCGAAACAATGGATTTTTACAGAGCCCAACGTAGAAACAGATTGTTCGAGGATTTTGTTGGGCCTCGAGTGGCTAAGTTTGGCAAGATTTTCAAAACAAGCTTGATGGGGTCGCCCACAGTGGTTGTTAATGGAGCTGAAGCCAACAGATTTTTCTTGTCCAATGAGTTTAAGTTGGTTGTGAGCTCGTGGCCATCAGCCTCGGTTCAGCTGATGGGCGAAGAATGCATAATGCAGAAACAAGGTGAAAGCCATCGATGTGTGCGTGGGCTTATTGGTGCAAGCCTTGCTGGTTCGAGTCTTGAGGCTATGATGCCTAAGTTGTCTAGCACAATTCGGTCTCATTTGGACAACAACTGGCTTGGCCGTGACATTATTGGTTTGTTTCACTCGGCGAAAGTCTTGACGTTTACGATAGTGTTTGAGTGTTTGATGGGGATTGGAGTTGAGCCAGATGTGTTGAGGACGTTCGAGAGAGTCTTGGAAGGAGTTTTTGCACCACCGTTCAGGTTTCCTGGCTCAAAGTTTTCGAGAGCCAAGAAAGCACGGTTAGAGATAGAGAAAATGTTGAGGGAAGTGGTGAGAGAGAAGAGGAGGAGAATTGAAGGAAAGGTAAAAGAAGCAGAAGATGGATTATTGCTTTCAAGGATGGTAACAGCGATGATGAGAGGGGAAATTAGTGAAGTGGAAGTAATAGACAACGTGGTTTTGCTTGTTTTTGCAGCTCATGATACAACCTCGTTTGCCATTGCCATTACTTTCAAAATGTTGGCTCACCATTCAGATTGTTACTCACTTCTTCTCAAGGAAGAGAAGTGTCTTGACTCAACAGAACACGCTGACATAGCGAGAAGCAAGGAACCAGGTCAGAATTTGACAATGGAAGATATAAAGAAGATGAAGTATACTTGGCAAGTAGCTCGTGAGAGTATTCGACTGTTTCCCCCTATATTCGGTTCTTTCAGGAAAGCGATTTCGGACATTGACTATGAGGGCTTCTTCATTCCCAAAGGATGGAAGGTCTTATGGACGACGTATGGAACACACTACGAGGAAGAGTATTTTGAAGATCCATTGAGTTTCAAGCCAAGCAGATTTGAGGAACCTGTTTCCCAGTATGTATATGTTCCATTTGGAGGAGGGCCAAGAGCTTGTGCAGGCTACCAGCTAGCCAAATTGAATATCCTCATCTTTATACACTTTGTTGTAACTCGTTATGATTGGAGTTTAGTCCACCCAGATGAGCCAATCATAATGGATCCTCTTCCTTTCCCTTCTCATGGAATGCCAATAAAGATATCTCCAAAATCAGAAGTTTGTCACAATGTACAGCAAATGTAA 1470 43.13 MAQEFSCFLLSLSLSFLAAILIMSIFLFRSKNLPPGQMGFPWIGETMDFYRAQRRNRLFEDFVGPRVAKFGKIFKTSLMGSPTVVVNGAEANRFFLSNEFKLVVSSWPSASVQLMGEECIMQKQGESHRCVRGLIGASLAGSSLEAMMPKLSSTIRSHLDNNWLGRDIIGLFHSAKVLTFTIVFECLMGIGVEPDVLRTFERVLEGVFAPPFRFPGSKFSRAKKARLEIEKMLREVVREKRRRIEGKVKEAEDGLLLSRMVTAMMRGEISEVEVIDNVVLLVFAAHDTTSFAIAITFKMLAHHSDCYSLLLKEEKCLDSTEHADIARSKEPGQNLTMEDIKKMKYTWQVARESIRLFPPIFGSFRKAISDIDYEGFFIPKGWKVLWTTYGTHYEEEYFEDPLSFKPSRFEEPVSQYVYVPFGGGPRACAGYQLAKLNILIFIHFVVTRYDWSLVHPDEPIIMDPLPFPSHGMPIKISPKSEVCHNVQQM 489
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 9102198 9104023 + Maker00007794 Lcy4g0758 630284
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0758 489 SUPERFAMILY Cytochrome P450 26 478 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g0758 489 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 421 430 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy4g0758 489 PRINTS E-class P450 group I signature 428 451 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g0758 489 PRINTS E-class P450 group I signature 273 290 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g0758 489 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g0758 489 PRINTS E-class P450 group I signature 387 411 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g0758 489 PRINTS E-class P450 group I signature 418 428 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g0758 489 Coils Coil 222 242 - -
Lcy4g0758 489 Gene3D Cytochrome P450 26 479 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g0758 489 CDD CYP90-like 66 478 - -
Lcy4g0758 489 PRINTS P450 superfamily signature 428 439 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g0758 489 PRINTS P450 superfamily signature 284 301 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g0758 489 PRINTS P450 superfamily signature 348 359 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g0758 489 PRINTS P450 superfamily signature 419 428 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g0758 489 FunFam Taxadiene 5-alpha hydroxylase 27 479 - -
Lcy4g0758 489 Pfam Cytochrome P450 34 465 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy4g0758 489 PANTHER CYTOCHROME P450 26 32 459 - GO:0004497(PANTHER)|GO:0005783(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)|GO:0051777(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0758 Lcy-Chr4:9102198 Lcy9g1199 Lcy-Chr9:36382889 1.11E-93 dispersed
Lcy4g0758 Lcy-Chr4:9102198 Lcy7g0979 Lcy-Chr7:10142468 1.16E-69 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0758 - - - 0.0