Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy4g0758 | ATGGCTCAAGAATTTAGCTGCTTTTTGCTTTCATTATCGCTCTCCTTTCTAGCTGCAATCTTAATAATGTCCATTTTTCTCTTTAGAAGCAAAAATCTTCCTCCTGGGCAAATGGGTTTCCCTTGGATTGGCGAAACAATGGATTTTTACAGAGCCCAACGTAGAAACAGATTGTTCGAGGATTTTGTTGGGCCTCGAGTGGCTAAGTTTGGCAAGATTTTCAAAACAAGCTTGATGGGGTCGCCCACAGTGGTTGTTAATGGAGCTGAAGCCAACAGATTTTTCTTGTCCAATGAGTTTAAGTTGGTTGTGAGCTCGTGGCCATCAGCCTCGGTTCAGCTGATGGGCGAAGAATGCATAATGCAGAAACAAGGTGAAAGCCATCGATGTGTGCGTGGGCTTATTGGTGCAAGCCTTGCTGGTTCGAGTCTTGAGGCTATGATGCCTAAGTTGTCTAGCACAATTCGGTCTCATTTGGACAACAACTGGCTTGGCCGTGACATTATTGGTTTGTTTCACTCGGCGAAAGTCTTGACGTTTACGATAGTGTTTGAGTGTTTGATGGGGATTGGAGTTGAGCCAGATGTGTTGAGGACGTTCGAGAGAGTCTTGGAAGGAGTTTTTGCACCACCGTTCAGGTTTCCTGGCTCAAAGTTTTCGAGAGCCAAGAAAGCACGGTTAGAGATAGAGAAAATGTTGAGGGAAGTGGTGAGAGAGAAGAGGAGGAGAATTGAAGGAAAGGTAAAAGAAGCAGAAGATGGATTATTGCTTTCAAGGATGGTAACAGCGATGATGAGAGGGGAAATTAGTGAAGTGGAAGTAATAGACAACGTGGTTTTGCTTGTTTTTGCAGCTCATGATACAACCTCGTTTGCCATTGCCATTACTTTCAAAATGTTGGCTCACCATTCAGATTGTTACTCACTTCTTCTCAAGGAAGAGAAGTGTCTTGACTCAACAGAACACGCTGACATAGCGAGAAGCAAGGAACCAGGTCAGAATTTGACAATGGAAGATATAAAGAAGATGAAGTATACTTGGCAAGTAGCTCGTGAGAGTATTCGACTGTTTCCCCCTATATTCGGTTCTTTCAGGAAAGCGATTTCGGACATTGACTATGAGGGCTTCTTCATTCCCAAAGGATGGAAGGTCTTATGGACGACGTATGGAACACACTACGAGGAAGAGTATTTTGAAGATCCATTGAGTTTCAAGCCAAGCAGATTTGAGGAACCTGTTTCCCAGTATGTATATGTTCCATTTGGAGGAGGGCCAAGAGCTTGTGCAGGCTACCAGCTAGCCAAATTGAATATCCTCATCTTTATACACTTTGTTGTAACTCGTTATGATTGGAGTTTAGTCCACCCAGATGAGCCAATCATAATGGATCCTCTTCCTTTCCCTTCTCATGGAATGCCAATAAAGATATCTCCAAAATCAGAAGTTTGTCACAATGTACAGCAAATGTAA | 1470 | 43.13 | MAQEFSCFLLSLSLSFLAAILIMSIFLFRSKNLPPGQMGFPWIGETMDFYRAQRRNRLFEDFVGPRVAKFGKIFKTSLMGSPTVVVNGAEANRFFLSNEFKLVVSSWPSASVQLMGEECIMQKQGESHRCVRGLIGASLAGSSLEAMMPKLSSTIRSHLDNNWLGRDIIGLFHSAKVLTFTIVFECLMGIGVEPDVLRTFERVLEGVFAPPFRFPGSKFSRAKKARLEIEKMLREVVREKRRRIEGKVKEAEDGLLLSRMVTAMMRGEISEVEVIDNVVLLVFAAHDTTSFAIAITFKMLAHHSDCYSLLLKEEKCLDSTEHADIARSKEPGQNLTMEDIKKMKYTWQVARESIRLFPPIFGSFRKAISDIDYEGFFIPKGWKVLWTTYGTHYEEEYFEDPLSFKPSRFEEPVSQYVYVPFGGGPRACAGYQLAKLNILIFIHFVVTRYDWSLVHPDEPIIMDPLPFPSHGMPIKISPKSEVCHNVQQM | 489 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 9102198 | 9104023 | + | Maker00007794 | Lcy4g0758 | 630284 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy4g0758 | 489 | SUPERFAMILY | Cytochrome P450 | 26 | 478 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g0758 | 489 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 421 | 430 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy4g0758 | 489 | PRINTS | E-class P450 group I signature | 428 | 451 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g0758 | 489 | PRINTS | E-class P450 group I signature | 273 | 290 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g0758 | 489 | PRINTS | E-class P450 group I signature | 67 | 86 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g0758 | 489 | PRINTS | E-class P450 group I signature | 387 | 411 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g0758 | 489 | PRINTS | E-class P450 group I signature | 418 | 428 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g0758 | 489 | Coils | Coil | 222 | 242 | - | - | |
| Lcy4g0758 | 489 | Gene3D | Cytochrome P450 | 26 | 479 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g0758 | 489 | CDD | CYP90-like | 66 | 478 | - | - | |
| Lcy4g0758 | 489 | PRINTS | P450 superfamily signature | 428 | 439 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g0758 | 489 | PRINTS | P450 superfamily signature | 284 | 301 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g0758 | 489 | PRINTS | P450 superfamily signature | 348 | 359 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g0758 | 489 | PRINTS | P450 superfamily signature | 419 | 428 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g0758 | 489 | FunFam | Taxadiene 5-alpha hydroxylase | 27 | 479 | - | - | |
| Lcy4g0758 | 489 | Pfam | Cytochrome P450 | 34 | 465 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy4g0758 | 489 | PANTHER | CYTOCHROME P450 26 | 32 | 459 | - | GO:0004497(PANTHER)|GO:0005783(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)|GO:0051777(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy4g0758 | Lcy-Chr4:9102198 | Lcy9g1199 | Lcy-Chr9:36382889 | 1.11E-93 | dispersed | |
| Lcy4g0758 | Lcy-Chr4:9102198 | Lcy7g0979 | Lcy-Chr7:10142468 | 1.16E-69 | wgd |
Pathway information