Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0775 ATGTCGAATGATGAAGGGAAAAATAATCTGTACCAGCAGTACGATCCATTTCACTACAATCAGCTGGATATGAACCGTTCGATCTTCCAGCAAGAGTCGTTGGATCCAGCTTTCATGAGCTTCACGAACTTCTTCGACACGTCGTTGGACTACAACAGCCTGTCGAGGGCGTTCGACGTGTCGTGCTCTTCATCGGAAGTGATTTCGGCGGTGGACGACATGTCGAAAATCAAGAAGGCGGCGGCGGCGGCTTCTTCAGGTGGAGGGAAAAGTAGTTTAAACAATAATAACCAATCGTCGACGCCAAATTCTTCAGTGTCGTCTTCGTCGAATGAGGCTGTAGCTGAAGAAGATTCAGTCAAGAGCAACAAAGACGACACCAAAGGGAGCCAGAATAAAGATGAAGAAAAGTCCTCTAAGAAACAGAACATAGCAAAAAAGAAAGAGAAACGGCAGAGGGAGCCCCGCTATGCTTTCTTGACTAAGAGCGAGATTGATCACCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAGGCAGTAAAAAACAGTCCTTACCCCAGAAGTTACTATAGATGCACGAGTCAAAAATGTTTAGTGAAAAAACGAGTAGAAAGATCATACCAAGATCCATCTGTGGTGATAACTACATACGAAGGCCAACACAACCACCATTGCCCAGCTACACTCCGAGGACATTCTGCAGGAATGATGTCGTCGCCCTTTTACGCATCGGCATCGACATCGGTAACGGCAGCCTCCTCCGGGCCTACCCTCCCCCAAGAACTCTTCTCGCATCTGCTACCGATCACCAACTGCCCGACCGACCCCGCGTCGATCATGTACCAAAATCTAAACCTCCAACAACACCTTCAAATGCCTGATCATTATGGTTTGTTGCAAGATTTGTTCACTCAAAAATAG 927 46.49 MSNDEGKNNLYQQYDPFHYNQLDMNRSIFQQESLDPAFMSFTNFFDTSLDYNSLSRAFDVSCSSSEVISAVDDMSKIKKAAAAASSGGGKSSLNNNNQSSTPNSSVSSSSNEAVAEEDSVKSNKDDTKGSQNKDEEKSSKKQNIAKKKEKRQREPRYAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCLVKKRVERSYQDPSVVITTYEGQHNHHCPATLRGHSAGMMSSPFYASASTSVTAASSGPTLPQELFSHLLPITNCPTDPASIMYQNLNLQQHLQMPDHYGLLQDLFTQK 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9260395 9262299 + Maker00007734 Lcy4g0775 630301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0775 308 MobiDBLite consensus disorder prediction 117 155 - -
Lcy4g0775 308 Pfam WRKY DNA -binding domain 169 226 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0775 308 FunFam WRKY transcription factor 57 154 228 - -
Lcy4g0775 308 MobiDBLite consensus disorder prediction 84 155 - -
Lcy4g0775 308 ProSiteProfiles WRKY domain profile. 163 228 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0775 308 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 91 236 IPR044810 GO:0003700(InterPro)
Lcy4g0775 308 MobiDBLite consensus disorder prediction 87 116 - -
Lcy4g0775 308 SUPERFAMILY WRKY DNA-binding domain 161 228 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0775 308 Gene3D WRKY domain 153 229 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0775 308 SMART WRKY_cls 168 227 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0207 Lcy-Chr1:1887395 Lcy4g0775 Lcy-Chr4:9260395 2.43E-46 dispersed
Lcy1g1461 Lcy-Chr1:14197233 Lcy4g0775 Lcy-Chr4:9260395 2.09E-21 dispersed
Lcy3g1824 Lcy-Chr3:45430483 Lcy4g0775 Lcy-Chr4:9260395 9.00E-40 dispersed
Lcy4g0775 Lcy-Chr4:9260395 Lcy8g0308 Lcy-Chr8:9337545 8.72E-29 dispersed
Lcy4g0775 Lcy-Chr4:9260395 Lcy8g1624 Lcy-Chr8:42827965 1.89E-41 wgd
Lcy4g0775 Lcy-Chr4:9260395 Lcy8g0896 Lcy-Chr8:32266610 1.23E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19968 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0775 - - - 0.0