Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy4g0775 | ATGTCGAATGATGAAGGGAAAAATAATCTGTACCAGCAGTACGATCCATTTCACTACAATCAGCTGGATATGAACCGTTCGATCTTCCAGCAAGAGTCGTTGGATCCAGCTTTCATGAGCTTCACGAACTTCTTCGACACGTCGTTGGACTACAACAGCCTGTCGAGGGCGTTCGACGTGTCGTGCTCTTCATCGGAAGTGATTTCGGCGGTGGACGACATGTCGAAAATCAAGAAGGCGGCGGCGGCGGCTTCTTCAGGTGGAGGGAAAAGTAGTTTAAACAATAATAACCAATCGTCGACGCCAAATTCTTCAGTGTCGTCTTCGTCGAATGAGGCTGTAGCTGAAGAAGATTCAGTCAAGAGCAACAAAGACGACACCAAAGGGAGCCAGAATAAAGATGAAGAAAAGTCCTCTAAGAAACAGAACATAGCAAAAAAGAAAGAGAAACGGCAGAGGGAGCCCCGCTATGCTTTCTTGACTAAGAGCGAGATTGATCACCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAGGCAGTAAAAAACAGTCCTTACCCCAGAAGTTACTATAGATGCACGAGTCAAAAATGTTTAGTGAAAAAACGAGTAGAAAGATCATACCAAGATCCATCTGTGGTGATAACTACATACGAAGGCCAACACAACCACCATTGCCCAGCTACACTCCGAGGACATTCTGCAGGAATGATGTCGTCGCCCTTTTACGCATCGGCATCGACATCGGTAACGGCAGCCTCCTCCGGGCCTACCCTCCCCCAAGAACTCTTCTCGCATCTGCTACCGATCACCAACTGCCCGACCGACCCCGCGTCGATCATGTACCAAAATCTAAACCTCCAACAACACCTTCAAATGCCTGATCATTATGGTTTGTTGCAAGATTTGTTCACTCAAAAATAG | 927 | 46.49 | MSNDEGKNNLYQQYDPFHYNQLDMNRSIFQQESLDPAFMSFTNFFDTSLDYNSLSRAFDVSCSSSEVISAVDDMSKIKKAAAAASSGGGKSSLNNNNQSSTPNSSVSSSSNEAVAEEDSVKSNKDDTKGSQNKDEEKSSKKQNIAKKKEKRQREPRYAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCLVKKRVERSYQDPSVVITTYEGQHNHHCPATLRGHSAGMMSSPFYASASTSVTAASSGPTLPQELFSHLLPITNCPTDPASIMYQNLNLQQHLQMPDHYGLLQDLFTQK | 308 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 9260395 | 9262299 | + | Maker00007734 | Lcy4g0775 | 630301 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy4g0775 | 308 | MobiDBLite | consensus disorder prediction | 117 | 155 | - | - | |
Lcy4g0775 | 308 | Pfam | WRKY DNA -binding domain | 169 | 226 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy4g0775 | 308 | FunFam | WRKY transcription factor 57 | 154 | 228 | - | - | |
Lcy4g0775 | 308 | MobiDBLite | consensus disorder prediction | 84 | 155 | - | - | |
Lcy4g0775 | 308 | ProSiteProfiles | WRKY domain profile. | 163 | 228 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy4g0775 | 308 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 91 | 236 | IPR044810 | GO:0003700(InterPro) | |
Lcy4g0775 | 308 | MobiDBLite | consensus disorder prediction | 87 | 116 | - | - | |
Lcy4g0775 | 308 | SUPERFAMILY | WRKY DNA-binding domain | 161 | 228 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy4g0775 | 308 | Gene3D | WRKY domain | 153 | 229 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy4g0775 | 308 | SMART | WRKY_cls | 168 | 227 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g0207 | Lcy-Chr1:1887395 | Lcy4g0775 | Lcy-Chr4:9260395 | 2.43E-46 | dispersed | |
Lcy1g1461 | Lcy-Chr1:14197233 | Lcy4g0775 | Lcy-Chr4:9260395 | 2.09E-21 | dispersed | |
Lcy3g1824 | Lcy-Chr3:45430483 | Lcy4g0775 | Lcy-Chr4:9260395 | 9.00E-40 | dispersed | |
Lcy4g0775 | Lcy-Chr4:9260395 | Lcy8g0308 | Lcy-Chr8:9337545 | 8.72E-29 | dispersed | |
Lcy4g0775 | Lcy-Chr4:9260395 | Lcy8g1624 | Lcy-Chr8:42827965 | 1.89E-41 | wgd | |
Lcy4g0775 | Lcy-Chr4:9260395 | Lcy8g0896 | Lcy-Chr8:32266610 | 1.23E-17 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19968 | None | None | None | None | Lcy | TF |
Pathway information
