Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0776 ATGTCATCTGGAAGTACTTTGAATACAGAATTGTCAAAGAAAACACCTTTCCTTGGCTTGTCCCTATGGGTTTTGATCTGCTTATGTGTTGGTGCATTCATTGTTTTGATTCTCGGTATCTTATCTGTATGGGTGATGTTTCGAAGAAAAACAAGGAGATCCCCAGACAACTTCTCTATTTCTCAAATACCAAATATCTCAAAGGATATTAAGGTGGACAGAATAGCGACTCAATCTGCTCACCACAATCATCTCGAGAGTCTTTATCTTTCCATTCATGATAAATCAAGTGAGAAGAACTCAGAGAAGATGATTGGTCATTTGGGTATGAGCAAGTCAAGTGACCCTGATAACATAAGCCAATGCAGCTCCAATTATCATCACGAAAGGGTTTTTAGCTCACATTCAGGAGAAGAAGGAAGCTCTGGGACTGTTAGAAAGCAGTCTTCCATATCATATGGAGGGTATGGAGGACTTGTGACGGCCTCTCCTCTTGTTGGCTTGCCTGAAATTTCACATCTCGGTTGGGGTCATTGGTTTACCCTCAGGGATCTAGAATTTGCGACAAATCGTTTCTCTGCAGACAATGTGCTTGGTGAAGGGGGTTATGGGGTTGTCTATAAAGGCAGACTGATAAATGGAACTGAGGTTGCAGTGAAGAAACTTCTCAATAATCTGGGACAAGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCCATTGGTCATGTAAGACACAAGAATCTTGTACGGCTCCTCGGCTATTGCATAGAAGGAGTTCATAGGATGCTGGTCTATGAATATGTGAACAATGGCAACTTAGAACAATGGTTACATGGGGCCATGCGCCAACATGGCACCCTTACTTGGGAGGCCCGAATGAAGGTGCTTCTTGGCACTGCCAAGGCGCTAGCATATTTACATGAAGCAATTGAACCAAAGGTTGTCCACAGAGACATAAAATCAAGCAACATCTTAATCGATGATGAATTTAATGCAAAGGTTTCAGATTTTGGATTGGCCAAACTTTTGGATGCTGGAGAGAGTCACATCACGACTAGAGTGATGGGAACATTTGGTTACGTGGCACCCGAATATGCCAACACTGGCTTGTTAAATGAAAAGAGTGACATTTACAGCTTTGGTGTTCTCCTTCTAGAAGCAATTACAGGAAGGGACCCTGTGGACTATGGCCGTCCTGCTAATGAGGTTAATCTTGTAGAGTGGTTAAAAGTGATGGTAGGCACAAGGAGAGCCGAGGAAGTTATAGACCCGAATCTTGAAACTAAACCCTCTACACGGGCGTTAAAACGTGCCCTTCTGATTGCACTTAGGTGTGTGGATCCTGAGGCAGATAAGAGACCAAAAATGACTCAAGTTGTTAGGATGCTTGAAGCTGATGACTACCCATCACGTGAGGATCGGAGGAGTCAAAAGAGCAGTGCAGCAAACTCGGAGGTCGAATCCACGAAAGAGATCTCCAGTCAAGCCGAGGTCGGAAGTAAACCAGGGGAATCACAAAGCAGACCTGCAAACGCGTGA 1539 43.92 MSSGSTLNTELSKKTPFLGLSLWVLICLCVGAFIVLILGILSVWVMFRRKTRRSPDNFSISQIPNISKDIKVDRIATQSAHHNHLESLYLSIHDKSSEKNSEKMIGHLGMSKSSDPDNISQCSSNYHHERVFSSHSGEEGSSGTVRKQSSISYGGYGGLVTASPLVGLPEISHLGWGHWFTLRDLEFATNRFSADNVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDAGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKVMVGTRRAEEVIDPNLETKPSTRALKRALLIALRCVDPEADKRPKMTQVVRMLEADDYPSREDRRSQKSSAANSEVESTKEISSQAEVGSKPGESQSRPANA 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9268109 9273464 - Maker00007858 Lcy4g0776 630302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0776 512 ProSitePatterns Protein kinases ATP-binding region signature. 198 221 IPR017441 GO:0005524(InterPro)
Lcy4g0776 512 Gene3D Transferase(Phosphotransferase) domain 1 268 482 - -
Lcy4g0776 512 Pfam Protein kinase domain 195 461 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0776 512 MobiDBLite consensus disorder prediction 481 512 - -
Lcy4g0776 512 PANTHER OS01G0323000 PROTEIN 6 491 IPR052232 -
Lcy4g0776 512 Gene3D Phosphorylase Kinase; domain 1 174 267 - -
Lcy4g0776 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g0776 512 ProSiteProfiles Protein kinase domain profile. 192 450 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0776 512 MobiDBLite consensus disorder prediction 462 512 - -
Lcy4g0776 512 Coils Coil 212 232 - -
Lcy4g0776 512 SUPERFAMILY Protein kinase-like (PK-like) 176 469 IPR011009 -
Lcy4g0776 512 SMART serkin_6 192 463 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0776 512 FunFam Putative receptor-like serine/threonine-protein kinase 268 478 - -
Lcy4g0776 512 CDD STKc_IRAK 198 464 - -
Lcy4g0776 512 MobiDBLite consensus disorder prediction 462 480 - -
Lcy4g0776 512 FunFam Putative receptor-like protein kinase 174 267 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1021 Lcy-Chr3:34576337 Lcy4g0776 Lcy-Chr4:9268109 8.58E-143 dispersed
Lcy4g0776 Lcy-Chr4:9268109 Lcy4g1762 Lcy-Chr4:43650739 2.00E-178 dispersed
Lcy6g0133 Lcy-Chr6:1179313 Lcy4g0776 Lcy-Chr4:9268109 5.86E-74 dispersed
Lcy10g1364 Lcy-Chr10:36832151 Lcy4g0776 Lcy-Chr4:9268109 3.48E-73 transposed
Lcy1g0314 Lcy-Chr1:2779742 Lcy4g0776 Lcy-Chr4:9268109 1.19E-39 wgd
Lcy1g2082 Lcy-Chr1:27892884 Lcy4g0776 Lcy-Chr4:9268109 1.25E-41 wgd
Lcy12g0901 Lcy-Chr12:13013602 Lcy4g0776 Lcy-Chr4:9268109 7.38E-195 wgd
Lcy2g2014 Lcy-Chr2:38132784 Lcy4g0776 Lcy-Chr4:9268109 2.04E-79 wgd
Lcy3g0133 Lcy-Chr3:3385088 Lcy4g0776 Lcy-Chr4:9268109 3.25E-62 wgd
Lcy3g0415 Lcy-Chr3:13866247 Lcy4g0776 Lcy-Chr4:9268109 6.33E-63 wgd
Lcy4g0776 Lcy-Chr4:9268109 Lcy5g1291 Lcy-Chr5:30557563 6.39E-63 wgd
Lcy4g0776 Lcy-Chr4:9268109 Lcy5g2369 Lcy-Chr5:46513497 2.41E-43 wgd
Lcy4g0776 Lcy-Chr4:9268109 Lcy7g1007 Lcy-Chr7:10609952 5.27E-29 wgd
Lcy4g0776 Lcy-Chr4:9268109 Lcy8g1625 Lcy-Chr8:42832368 3.39E-274 wgd
Lcy4g0776 Lcy-Chr4:9268109 Lcy9g1415 Lcy-Chr9:39135363 9.72E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65858 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0776 - - - 0.0