Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0786 ATGATGAATGGGAGCTGCAAAAAGGGAGCTGGAGCTCCATCGCCGTGCGCTGCGTGCAAGCTTCTGCGGCGGCGGTGCGCTCAGGACTGCGTTTTTGCGCCTTATTTTCCTGCTGATCAGCCCCACAAATTCTCCAGTGTTCACAAGGTCTTTGGAGCTAGTAATGTCAGCAAATTGTTGCAGGAGTTACCCGAGCAGCAACGGAGTGACGCAGTGAGCTCGATGGTATACGAGGCGAACGCGAGGATTCGAGATCCGGTTTACGGGTGTGTGGGAACAATATCATGTCTACAACGGCAAGTGGATGCGCTACAAGAGCAACTGGCAATGACACAGGCCCAGCTGCTTCACTTGAAAATGGGCCAATTTTCTTCAACATTGCAATCATCATCTACTGAGAATAATGTCCATTCTCCGCCCAATATCAATGTGGGCACATCCACATCCACTTCTTTGTGGTCTTGCTAG 468 50.85 MMNGSCKKGAGAPSPCAACKLLRRRCAQDCVFAPYFPADQPHKFSSVHKVFGASNVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQRQVDALQEQLAMTQAQLLHLKMGQFSSTLQSSSTENNVHSPPNINVGTSTSTSLWSC 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9452814 9455065 + Maker00007778 Lcy4g0786 630312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0786 155 Coils Coil 94 114 - -
Lcy4g0786 155 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Lcy4g0786 155 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Lcy4g0786 155 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 135 - -
Lcy4g0786 155 MobiDBLite consensus disorder prediction 129 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0786 Lcy-Chr4:9452814 Lcy5g1567 Lcy-Chr5:37143643 1.03E-59 dispersed
Lcy11g0522 Lcy-Chr11:12170869 Lcy4g0786 Lcy-Chr4:9452814 6.96E-38 wgd
Lcy4g0786 Lcy-Chr4:9452814 Lcy7g1019 Lcy-Chr7:10781412 1.31E-55 wgd
Lcy4g0786 Lcy-Chr4:9452814 Lcy8g1638 Lcy-Chr8:42979317 2.21E-64 wgd
Lcy4g0786 Lcy-Chr4:9452814 Lcy8g0393 Lcy-Chr8:12067168 2.36E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19970 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0786 - - - 0.0