Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy4g0830 | ATGGAGTTGGATGGCATCGAAGGCGTGCCATCCATGGATGTGATGGACGAGGAGGATAAGACCCTTCAACGTCACTGTCAGTTTCCTTCGATTTCGAAGCCTCGAATCATCAATAACGACAATCCCACCACCACAAGTGTCCACGAGCTTCTTGAATGTCCCGTTTGCACCAATTCTATGTATCCTCCGATTCATCAGGGTCTGTCGTTAGAGCTTCTTCAGATTGATTGTCAAATTGCTGATTGTTTAATGGGAATCTTCTCTTCAATGGGGCCTTTGCCTGCAATGAGTCTACGCGTTAGTTTAAATGAAGAGCCATTTTATTGTATTTTAGAGACAAGTGTTGTTATCATTTGTTCTGCTTTAGTCAACTTTGTTCTGAAACTGGAATCATGTTCCAATTGTGTCCCTTTTTGGGGAGAAGTTGGAATCCTCTGCGTGGTCTCTAGAGCGACTATCTTAGCCGGGGATCAGCCTTGTCTTGGACGGGTACATGGACGGGTGAAGGTGAAATTTGATTGGAATTTACTTCATTTTCTTCACCCTTCAATGGTACTTGCAGGGCTGAAGTGGCTAAGAATATGGGAATGCTTGTACTCGTCCAATTGTCCCAATGGACACACCCTCTGTTCTTCATGTAAAACAAGGGTTGACAACCGTTGCCCGACATGCAGACAAGAGCTCGGCGACATCAGATGTCTAGCATTAGAAAAAATCGCTGAATCACTTAAACTGGCTTGTAAATTCTGCACATTCGGGTGCCCTGAGATATTGCCTTACTACAGTAAACTCAAACACGAATCTGCTTGTTACTTTAGACCATATACCTGCCCTTATGCTGGATCAGACTGCCCAGTTGATGGAGACATTCCTTTCCTTGTTTCTCATCTTCGGGATGACCACAAAGTCGACATGCATTCTGGATGCACGTTTAATCATCGTTACGTAAAGGCTAATCCATGTGAAGTTGAAAACGCTACATGGATGCTAACTGTCTTCCACTGTTTTGGCCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTGGGAATGGCACCGGTTTACATGGCATTTCTCCGATTCATGGGCGACGAAACAGACGCCCGAAACTACAGTTACAGCCTCGAGGTCGGTGGAAATGGCAGGAAGCTCATATGGGAGGGCAACCCTCGAAGCATTCGGGACAACCACAAGAAAGTCAGAGACAGCCACGACGGGCTCATTATACAGAGAAACATGGCACTCTTCTTTTCGGGGGGAGAACGGAAAGAGCTGAAGCTGCGAATCACAGGACGGATTTGGAAAGAACAAAATAAACAGTAA | 1323 | 45.28 | MELDGIEGVPSMDVMDEEDKTLQRHCQFPSISKPRIINNDNPTTTSVHELLECPVCTNSMYPPIHQGLSLELLQIDCQIADCLMGIFSSMGPLPAMSLRVSLNEEPFYCILETSVVIICSALVNFVLKLESCSNCVPFWGEVGILCVVSRATILAGDQPCLGRVHGRVKVKFDWNLLHFLHPSMVLAGLKWLRIWECLYSSNCPNGHTLCSSCKTRVDNRCPTCRQELGDIRCLALEKIAESLKLACKFCTFGCPEILPYYSKLKHESACYFRPYTCPYAGSDCPVDGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDARNYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIWKEQNKQ | 440 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 10772557 | 10776151 | + | Maker00005029 | Lcy4g0830 | 630356 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy4g0830 | 440 | CDD | Sina | 303 | 431 | - | - | |
Lcy4g0830 | 440 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 237 | 297 | IPR013083 | - | |
Lcy4g0830 | 440 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 239 | 297 | - | - | |
Lcy4g0830 | 440 | Pfam | Sina, zinc finger | 238 | 313 | - | - | |
Lcy4g0830 | 440 | Pfam | Sina, TRAF-like domain | 333 | 430 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
Lcy4g0830 | 440 | ProSiteProfiles | Zinc finger SIAH-type profile. | 242 | 302 | IPR013010 | GO:0008270(InterPro) | |
Lcy4g0830 | 440 | SUPERFAMILY | TRAF domain-like | 242 | 434 | - | - | |
Lcy4g0830 | 440 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 41 | 432 | IPR052088 | GO:0005737(PANTHER)|GO:0061630(PANTHER) | |
Lcy4g0830 | 440 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 301 | 430 | IPR008974 | GO:0005515(InterPro) | |
Lcy4g0830 | 440 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 298 | 430 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy4g0830 | Lcy-Chr4:10772557 | Lcy6g0069 | Lcy-Chr6:617257 | 3.29E-160 | dispersed | |
Lcy1g2128 | Lcy-Chr1:29369174 | Lcy4g0830 | Lcy-Chr4:10772557 | 4.18E-145 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy4g0830 | K04506 | - | csv:101209363 | 506.523 |