Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0830 ATGGAGTTGGATGGCATCGAAGGCGTGCCATCCATGGATGTGATGGACGAGGAGGATAAGACCCTTCAACGTCACTGTCAGTTTCCTTCGATTTCGAAGCCTCGAATCATCAATAACGACAATCCCACCACCACAAGTGTCCACGAGCTTCTTGAATGTCCCGTTTGCACCAATTCTATGTATCCTCCGATTCATCAGGGTCTGTCGTTAGAGCTTCTTCAGATTGATTGTCAAATTGCTGATTGTTTAATGGGAATCTTCTCTTCAATGGGGCCTTTGCCTGCAATGAGTCTACGCGTTAGTTTAAATGAAGAGCCATTTTATTGTATTTTAGAGACAAGTGTTGTTATCATTTGTTCTGCTTTAGTCAACTTTGTTCTGAAACTGGAATCATGTTCCAATTGTGTCCCTTTTTGGGGAGAAGTTGGAATCCTCTGCGTGGTCTCTAGAGCGACTATCTTAGCCGGGGATCAGCCTTGTCTTGGACGGGTACATGGACGGGTGAAGGTGAAATTTGATTGGAATTTACTTCATTTTCTTCACCCTTCAATGGTACTTGCAGGGCTGAAGTGGCTAAGAATATGGGAATGCTTGTACTCGTCCAATTGTCCCAATGGACACACCCTCTGTTCTTCATGTAAAACAAGGGTTGACAACCGTTGCCCGACATGCAGACAAGAGCTCGGCGACATCAGATGTCTAGCATTAGAAAAAATCGCTGAATCACTTAAACTGGCTTGTAAATTCTGCACATTCGGGTGCCCTGAGATATTGCCTTACTACAGTAAACTCAAACACGAATCTGCTTGTTACTTTAGACCATATACCTGCCCTTATGCTGGATCAGACTGCCCAGTTGATGGAGACATTCCTTTCCTTGTTTCTCATCTTCGGGATGACCACAAAGTCGACATGCATTCTGGATGCACGTTTAATCATCGTTACGTAAAGGCTAATCCATGTGAAGTTGAAAACGCTACATGGATGCTAACTGTCTTCCACTGTTTTGGCCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTGGGAATGGCACCGGTTTACATGGCATTTCTCCGATTCATGGGCGACGAAACAGACGCCCGAAACTACAGTTACAGCCTCGAGGTCGGTGGAAATGGCAGGAAGCTCATATGGGAGGGCAACCCTCGAAGCATTCGGGACAACCACAAGAAAGTCAGAGACAGCCACGACGGGCTCATTATACAGAGAAACATGGCACTCTTCTTTTCGGGGGGAGAACGGAAAGAGCTGAAGCTGCGAATCACAGGACGGATTTGGAAAGAACAAAATAAACAGTAA 1323 45.28 MELDGIEGVPSMDVMDEEDKTLQRHCQFPSISKPRIINNDNPTTTSVHELLECPVCTNSMYPPIHQGLSLELLQIDCQIADCLMGIFSSMGPLPAMSLRVSLNEEPFYCILETSVVIICSALVNFVLKLESCSNCVPFWGEVGILCVVSRATILAGDQPCLGRVHGRVKVKFDWNLLHFLHPSMVLAGLKWLRIWECLYSSNCPNGHTLCSSCKTRVDNRCPTCRQELGDIRCLALEKIAESLKLACKFCTFGCPEILPYYSKLKHESACYFRPYTCPYAGSDCPVDGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDARNYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIWKEQNKQ 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10772557 10776151 + Maker00005029 Lcy4g0830 630356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0830 440 CDD Sina 303 431 - -
Lcy4g0830 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 297 IPR013083 -
Lcy4g0830 440 FunFam E3 ubiquitin-protein ligase SINAT3 239 297 - -
Lcy4g0830 440 Pfam Sina, zinc finger 238 313 - -
Lcy4g0830 440 Pfam Sina, TRAF-like domain 333 430 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Lcy4g0830 440 ProSiteProfiles Zinc finger SIAH-type profile. 242 302 IPR013010 GO:0008270(InterPro)
Lcy4g0830 440 SUPERFAMILY TRAF domain-like 242 434 - -
Lcy4g0830 440 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 41 432 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Lcy4g0830 440 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 301 430 IPR008974 GO:0005515(InterPro)
Lcy4g0830 440 FunFam E3 ubiquitin-protein ligase SINAT5-like 298 430 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0830 Lcy-Chr4:10772557 Lcy6g0069 Lcy-Chr6:617257 3.29E-160 dispersed
Lcy1g2128 Lcy-Chr1:29369174 Lcy4g0830 Lcy-Chr4:10772557 4.18E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0830 K04506 - csv:101209363 506.523